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MacroAPE 1083:10-GGTTTCTTTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;66.768;62.488;636.864;89.88!2;122.408;63.344;601.768;68.48!3;47.936;69.336;31.672;707.056!4;23.968;32.528;38.52;760.984!5;26.536;45.368;89.8...")
 
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-109I6;0.122581!10455-106G5;0.25194!10534-107G3;0.0875377!10429-106D6;0.685597!10464-106H5;0.790132!10827-111C8;0.812322!10789-110H6;0.0467123!10828-111C9;0.0554513!10788-110H5;0.00913118!10792-110H9;0.669611!10765-110E9;0.100719!10829-111D1;0.398351!10830-111D2;0.429614!10831-111D3;0.480952!10832-111D4;0.107774!10833-111D5;0.398442!10764-110E8;0.892895!10770-110F5;0.224195!10399-106A3;0.143495!10400-106A4;0.757971!10405-106A9;0.731418!10834-111D6;0.714069!10835-111D7;0.552657!10836-111D8;0.654092!10837-111D9;0.678525!10699-109G6;0.358867!10802-111A1;0.115196!10796-110I4;0.828371!10010-101C1;0.927224!10810-111A9;0.0461302!10421-106C7;0.019854!10708-109H6;0.768978!12235-129G3;0.0919212!12236-129G4;0.121204!12237-129G5;0.370149!10167-103B5;0.203316!10151-102I7;0.441196!10428-106D5;0.845303!10795-110I3;0.0698363!10805-111A4;0.949823!10052-101G7;0.00388576!10189-103D9;0.0139022!10589-108D4;0.000325764!10425-106D2;0.00170774!10427-106D4;0.701255!10702-109G9;0.0583964!10432-106D9;0.743371!10496-107C1;0.851796!10718-109I7;0.800706!10011-101C2;0.849922!10053-101G8;0.050008!10686-109F2;0.322044!10084-102B3;0.552956!10012-101C3;0.683681!10085-102B4;0.861698!10482-107A5;0.213542!10419-106C5;0.00440623!10080-102A8;0.00212444!10760-110E4;0.20731!10709-109H7;0.236351!10710-109H8;0.982664!10703-109H1;0.249729!10719-109I8;0.00175567!10642-109A3;7.63755e-06!10177-103C6;0.0202062!10164-103B2;0.483358!10173-103C2;0.973441!10166-103B4;0.0224859!10083-102B2;0.0768208!10188-103D8;0.00609849!10552-107I3;0.810146!10553-107I4;0.120353!10013-101C4;0.232453!10536-107G5;0.0329611!10618-108G6;0.875572!10423-106C9;0.031417!10785-110H2;0.103901!12238-129G6;0.138131!12239-129G7;0.129773!12240-129G8;0.85201!10416-106C2;0.0211781!10801-110I9;0.586443!10766-110F1;0.0903724!10824-111C5;0.289788!10825-111C6;0.755141!10826-111C7;0.757676!10454-106G4;0.947978!10409-106B4;0.320631!10638-108I8;0.0969983!10636-108I6;0.110477!10513-107D9;0.266363!10420-106C6;0.0646447!10082-102B1;0.00352626!10014-101C5;0.218353!10070-101I7;0.0101778!10452-106G2;0.0261235!10453-106G3;0.0395249!10449-106F8;0.15423!10042-101F6;0.172871!10069-101I6;0.58664!10193-103E4;0.854858!10631-108I1;0.257753!10438-106E6;0.67883!10488-107B2;0.509649!10196-103E7;0.14854!10071-101I8;0.416082!10071-101I8;0.151654!10041-101F5;0.292192!10451-106G1;0.00161913!10450-106F9;0.0721375!10604-108F1;0.0231797!10605-108F2;0.965527!10606-108F3;0.480565!10603-108E9;0.683161!10497-107C2;0.69172!10448-106F7;0.155455!10643-109A4;0.560726!10426-106D3;0.0841185!10431-106D8;0.797721!10197-103E8;0.285165!10443-106F2;0.151628!10815-111B5;0.639017!10816-111B6;0.140983!10817-111B7;0.135197!10015-101C6;0.122854!10410-106B5;0.0591974!10054-101G9;0.102184!10758-110E2;0.377148!10711-109H9;0.30929!10040-101F4;0.091394!10470-106I2;0.723485!10415-106C1;0.580938!10198-103E9;0.825328!10614-108G2;0.145011!10612-108F9;0.828359!10549-107H9;0.208212!10615-108G3;0.0374645!10487-107B1;0.0744133!10433-106E1;0.874686!10688-109F4;0.227662!10444-106F3;0.255319!10444-106F3;0.131116!10485-107A8;0.121088!10413-106B8;0.735952!10175-103C4;0.784642!10161-103A8;0.903684!12131-128D7;0.906488!10624-108H3;0.185725!10712-109I1;0.0521245!10205-103F7;0.104567!10206-103F8;0.346934!10207-103F9;0.69145!10050-101G5;0.204419!10051-101G6;0.466661!10016-101C7;0.673898!10046-101G1;0.952524!10778-110G4;0.96736!10633-108I3;0.204386!10818-111B8;0.00870737!10819-111B9;0.134246!10820-111C1;0.145764!10484-107A7;0.126068!10808-111A7;0.139554!10169-103B7;0.213651!10153-102I9;0.472887!13425-144D5;0.827155!13433-144E4;0.00216538!13437-144E8;0.00298185!11904-125F5;0.00613473!11905-125F6;0.0234148!10039-101F3;0.0936236!10791-110H8;0.704237!10017-101C8;0.178191!10045-101F9;0.582123!10509-107D5;0.710211!10839-111E2;0.228346!10692-109F8;0.0176194!10079-102A7;0.20652!10078-102A6;0.660468!10721-110A1;0.841611!10569-108B2;0.162975!10570-108B3;0.207725!10571-108B4;0.0678658!10647-109A8;0.0922244!10752-110D5;0.0693898!10782-110G8;0.624134!10726-110A6;0.202634!10018-101C9;0.653675!10086-102B5;0.716251!10182-103D2;0.859701!10165-103B3;0.59985!10499-107C4;0.659149!10408-106B3;0.427098!10019-101D1;0.656803!10068-101I5;0.0363567!10075-102A3;0.12233!10077-102A5;0.0938529!10727-110A7;0.0464995!10775-110G1;0.535574!10412-106B7;0.362491!12231-129F8;0.574687!12232-129F9;0.967404!12233-129G1;0.785207!12234-129G2;0.850584!10414-106B9;0.757552!10170-103B8;0.00650306!10183-103D3;0.638359!10150-102I6;0.802422!10174-103C3;0.777254!10155-103A2;0.721354!10038-101F2;0.962032!10838-111E1;0.890432!10759-110E3;0.00135978!10514-107E1;0.102705!10465-106H6;0.127753!10691-109F7;0.402878!10843-111E6;0.938071!10844-111E7;0.00058922!11747-123G1;6.72732e-05!11748-123G2;0.161845!11749-123G3;0.283215!11750-123G4;0.0547967!11751-123G5;0.799587!11840-124H4;0.854998!11752-123G6;0.415465!11753-123G7;0.886475!11754-123G8;0.271912!11755-123G9;0.326567!11756-123H1;0.378463!11833-124G6;0.608258!11760-123H5;0.760813!11836-124G9;0.206986!11758-123H3;0.632364!11835-124G8;0.154347!11762-123H7;0.460903!11838-124H2;0.0309884!11757-123H2;0.129277!11759-123H4;0.371785!11761-123H6;0.746261!11842-124H6;0.207436!11837-124H1;0.520611!10568-108B1;0.705704!13230-141I8;0.177459!13231-141I9;0.767223!10696-109G3;0.833826!10493-107B7;0.879982!10494-107B8;0.488164!10850-111F4;0.0605661!10851-111F5;0.242652!10852-111F6;0.955324!10853-111F7;0.0624172!10854-111F8;0.568358!10855-111F9;0.485588!10856-111G1;0.650113!10847-111F1;0.294393!10846-111E9;0.241021!10848-111F2;0.444234!10845-111E8;0.851827!10857-111G2;0.182744!10858-111G3;0.117431!10156-103A3;0.525149!11901-125F2;0.771136!11902-125F3;0.0754884!11903-125F4;0.14909!10689-109F5;0.123697!10648-109A9;0.991386!10784-110H1;0.41961!10744-110C6;0.81959!10772-110F7;0.152365!10474-106I6;0.548995!10600-108E6;0.013007!10684-109E9;0.201566!12226-129F3;0.965752!12227-129F4;0.10169!10508-107D4;0.365431!10539-107G8;0.000240642!10607-108F4;0.00412133!10555-107I6;1.47705e-05!10774-110F9;0.000116622!10637-108I7;0.000336507!10663-109C6;0.000739315!10728-110A8;0.00154142!10729-110A9;0.00200038!10430-106D7;0.995194!10730-110B1;0.648873!10813-111B3;0.00406831!10812-111B2;0.657685!10037-101F1;0.0552045!10172-103C1;0.745495!10163-103B1;0.821454!10076-102A4;0.696307!10073-102A1;0.456442!10036-101E9;0.262962!10195-103E6;0.593864!10277-104E7;0.7894!10434-106E2;0.493018!10550-107I1;0.053166!10545-107H5;0.251755!10544-107H4;0.491565!10704-109H2;0.476399!10510-107D6;0.448961!10558-107I9;0.0835943!10020-101D2;0.347883!10732-110B3;0.129651!10049-101G4;0.0850722!10698-109G5;0.431545!10437-106E5;0.00454402!10417-106C3;0.555014!10035-101E8;0.638177!10171-103B9;0.772821!10157-103A4;0.641667!10034-101E7;0.891162!10072-101I9;0.682492!10199-103F1;0.382237!10200-103F2;0.220287!10697-109G4;0.513234!10723-110A3;0.00572414!10179-103C8;0.486029!10160-103A7;0.0539741!10180-103C9;0.289543!10162-103A9;0.279974!10021-101D3;0.936773!10840-111E3;0.00546506!10706-109H4;0.0307083!10033-101E6;0.350422!10032-101E5;0.987752!10490-107B4;0.517194!10439-106E7;0.244797!10022-101D4;0.349696!10176-103C5;0.0853979!10469-106I1;0.647813!10067-101I4;0.216477!10411-106B6;0.697797!10471-106I3;0.0459208!10030-101E3;0.905516!10475-106I7;0.843253!10787-110H4;0.00108138!10477-106I9;0.0872826!10695-109G2;0.0431492!11771-123I7;0.807305!11772-123I8;0.180242!11773-123I9;0.450203!10093-102C3;0.854912!10442-106F1;0.250703!10442-106F1;0.106253!10201-103F3;0.241614!10639-108I9;0.357883!11843-124H7;0.698023!11841-124H5;0.347833!10693-109F9;0.27069!10436-106E4;0.0164124!10483-107A6;0.831354!10282-104F3;0.251472!10023-101D5;0.52098!10066-101I3;0.893839!10065-101I2;0.934139!10800-110I8;0.956231!10610-108F7;0.00733362!10841-111E4;0.0267218!10541-107H1;0.000164443!10842-111E5;0.0166272!10562-108A4;0.000611142!10024-101D6;0.431931!10064-101I1;0.0173181!10609-108F6;0.529729!10048-101G3;0.303648!10781-110G7;0.240935!10181-103D1;0.00259046!10159-103A6;0.525523!10056-101H2;0.995212!10737-110B8;0.222914!10025-101D7;0.498699!10044-101F8;0.0408586!10424-106D1;0.247328!10463-106H4;0.0434307!10616-108G4;0.539289!10486-107A9;0.693743!10062-101H8;0.956736!10202-103F4;0.196861!10158-103A5;0.109492!10441-106E9;0.863319!10031-101E4;0.00356704!10063-101H9;0.549247!10063-101H9;0.383695!11763-123H8;0.389985!11765-123I1;0.798068!11768-123I4;0.994781!10807-111A6;0.347502!10790-110H7;0.0306129!10798-110I6;0.093252!10786-110H3;0.000581072!10591-108D6;0.0348585!10593-108D8;0.0501187!10590-108D5;0.0366751!10026-101D8;0.0600272!10096-102C6;0.888958!10168-103B6;0.00395511!10154-103A1;0.324852!10209-103G2;0.918927!10061-101H7;0.415942!10027-101D9;0.455818!10043-101F7;0.0248857!10783-110G9;0.0165092!10028-101E1;0.937337!10060-101H6;0.0574894!10203-103F5;0.566508!10059-101H5;0.77469!10047-101G2;0.951672!10029-101E2;0.00961862!10058-101H4;0.0132213!10418-106C4;0.595124!10492-107B6;0.47588!10694-109G1;0.977588!10797-110I5;0.0983651!10057-101H3;0.719665!10100-102D1;0.518116!10055-101H1;0.0237752!10204-103F6;0.200862!10191-103E2;0.0592376!10563-108A5;0.011451
|name=10-GGTTTCTTTT,CNhs12311,BestGuess:STAT2_f1_HM09(0.738888127059946),T:856.0(19.39%),B:5883.4(13.38%),P:1e-28
|name=10-GGTTTCTTTT,CNhs12311,BestGuess:STAT2_f1_HM09(0.738888127059946),T:856.0(19.39%),B:5883.4(13.38%),P:1e-28
|tomtom_result=AZF1#MA0277.1;-2;8.32361e-05;0.0396204;0.0792408;8;GGTTTCTTTT;TTTCTTTTT;-!IRF1#MA0050.1;0;0.000630078;0.299917;0.299917;10;GGTTTCTTTT;GGTTTCACTTTC;-!STAT1#MA0137.1;1;0.00100488;0.478322;0.318881;10;GGTTTCTTTT;CAGTTTCATTTTCC;-!che-1#MA0260.1;0;0.00140374;0.66818;0.33409;6;GGTTTCTTTT;GGTTTC;-!IRF2#MA0051.1;5;0.00827154;3.93725;1;10;GGTTTCTTTT;GTTTTGCTTTCACTTTCC;-!Klf4#MA0039.1;0;0.0138861;6.60979;1;10;GGTTTCTTTT;CCTTCCTTTA;-!PEND#MA0127.1;-1;0.0147528;7.02234;1;9;GGTTTCTTTT;ACTTCTTATT;+!Foxd3#MA0041.1;3;0.0155196;7.38734;1;9;GGTTTCTTTT;GAATGTTTGTTT;+!squamosa#MA0082.1;-1;0.017896;8.5185;1;9;GGTTTCTTTT;ATTTCCATTTTTGG;-!ttx-3::ceh-10#MA0263.1;3;0.0195546;9.308;1;10;GGTTTCTTTT;ATTGGCTTCGTTAA;+
}}
}}

Latest revision as of 12:45, 7 September 2012

Full Name: 10-GGTTTCTTTT,CNhs12311,BestGuess:STAT2_f1_HM09(0.738888127059946),T:856.0(19.39%),B:5883.4(13.38%),P:1e-28

Motif matrix
POACGT
166.76862.488636.86489.88
2122.40863.344601.76868.48
347.93669.33631.672707.056
423.96832.52838.52760.984
526.53645.36889.88694.216
664.2644.56872.7674.472
741.94468.4852.216693.36
859.06459.06459.92677.952
934.2440.23241.944739.584
1052.21635.09674.472694.216

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
AZF1#MA0277.1-28.32361e-050.03962040.07924088GGTTTCTTTTTTTCTTTTT-
IRF1#MA0050.100.0006300780.2999170.29991710GGTTTCTTTTGGTTTCACTTTC-
STAT1#MA0137.110.001004880.4783220.31888110GGTTTCTTTTCAGTTTCATTTTCC-
che-1#MA0260.100.001403740.668180.334096GGTTTCTTTTGGTTTC-
IRF2#MA0051.150.008271543.93725110GGTTTCTTTTGTTTTGCTTTCACTTTCC-
Klf4#MA0039.100.01388616.60979110GGTTTCTTTTCCTTCCTTTA-
PEND#MA0127.1-10.01475287.0223419GGTTTCTTTTACTTCTTATT+
Foxd3#MA0041.130.01551967.3873419GGTTTCTTTTGAATGTTTGTTT+
squamosa#MA0082.1-10.0178968.518519GGTTTCTTTTATTTCCATTTTTGG-
ttx-3::ceh-10#MA0263.130.01955469.308110GGTTTCTTTTATTGGCTTCGTTAA+
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