MacroAPE 1083:Motif3: Difference between revisions
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111C8;0.936631!10789-110H6;0.510548!10828-111C9;0.277911!10788-110H5;0.245901!10792-110H9;0.247448!10765-110E9;0.482146!10829-111D1;0.430349!10830-111D2;0.345979!10831-111D3;0.727885!10832-111D4;0.330238!10833-111D5;0.458935!10764-110E8;0.435107!10770-110F5;0.715699!10399-106A3;0.561585!10400-106A4;0.36598!10405-106A9;0.302329!10834-111D6;0.341222!10835-111D7;0.228924!10836-111D8;0.4799!10837-111D9;0.878987!10699-109G6;0.543618!10802-111A1;0.495405!10796-110I4;0.920687!10010-101C1;0.314676!10810-111A9;0.418703!10421-106C7;0.787335!10708-109H6;0.843511!12235-129G3;0.750808!12236-129G4;0.680741!12237-129G5;0.0725699!10167-103B5;0.475316!10151-102I7;0.335493!10428-106D5;0.28568!10795-110I3;0.488587!10805-111A4;0.36834!10052-101G7;0.104761!10189-103D9;0.526322!10589-108D4;0.944819!10425-106D2;0.417382!10427-106D4;0.106421!10702-109G9;0.73016!10432-106D9;0.355467!10496-107C1;0.182513!10718-109I7;0.162694!10011-101C2;0.151694!10053-101G8;0.618355!10686-109F2;0.418645!10084-102B3;0.690452!10012-101C3;0.417087!10085-102B4;0.373742!10482-107A5;0.199268!10419-106C5;0.427702!10080-102A8;0.49422!10760-110E4;0.622341!10709-109H7;0.266495!10710-109H8;0.326526!10703-109H1;0.530028!10719-109I8;0.285863!10642-109A3;0.018522!10177-103C6;0.0120313!10164-103B2;0.387414!10173-103C2;0.314496!10166-103B4;0.315!10083-102B2;0.256741!10188-103D8;0.395249!10552-107I3;0.320368!10553-107I4;0.511179!10013-101C4;0.203208!10536-107G5;0.481057!10618-108G6;0.130706!10423-106C9;0.734072!10785-110H2;0.761871!12238-129G6;0.268188!12239-129G7;0.947314!12240-129G8;0.530737!10416-106C2;0.483961!10801-110I9;0.384034!10766-110F1;0.341409!10824-111C5;0.563515!10825-111C6;0.703567!10826-111C7;0.712283!10454-106G4;0.645967!10409-106B4;0.711644!10638-108I8;0.651832!10636-108I6;0.970232!10513-107D9;0.763805!10420-106C6;0.836714!10082-102B1;0.0855619!10014-101C5;0.730586!10070-101I7;0.782603!10452-106G2;0.418692!10453-106G3;0.277007!10449-106F8;0.305351!10042-101F6;0.35318!10069-101I6;0.617023!10193-103E4;0.949034!10631-108I1;0.52307!10438-106E6;0.889195!10488-107B2;0.49042!10196-103E7;0.0964863!10071-101I8;0.502092!10071-101I8;0.538572!10041-101F5;0.145824!10451-106G1;0.626475!10450-106F9;0.337267!10604-108F1;0.267754!10605-108F2;0.762333!10606-108F3;0.30559!10603-108E9;0.768327!10497-107C2;0.488736!10448-106F7;0.832937!10643-109A4;0.193516!10426-106D3;0.888332!10431-106D8;0.35701!10197-103E8;0.728371!10443-106F2;0.931594!10815-111B5;0.0661111!10816-111B6;0.630975!10817-111B7;0.771316!10015-101C6;0.64779!10410-106B5;0.744975!10054-101G9;0.466252!10758-110E2;0.398161!10711-109H9;0.362587!10040-101F4;0.370944!10470-106I2;0.292041!10415-106C1;0.822204!10198-103E9;0.139278!10614-108G2;0.910808!10612-108F9;0.267887!10549-107H9;0.801484!10615-108G3;0.389997!10487-107B1;0.0276955!10433-106E1;0.250796!10688-109F4;0.0643357!10444-106F3;0.913341!10444-106F3;0.666429!10485-107A8;0.693037!10413-106B8;0.719456!10175-103C4;0.177284!10161-103A8;0.520702!12131-128D7;0.509412!10624-108H3;0.653165!10712-109I1;0.0652298!10205-103F7;0.816928!10206-103F8;0.732134!10207-103F9;0.893229!10050-101G5;0.880743!10051-101G6;0.604748!10016-101C7;0.450815!10046-101G1;0.657569!10778-110G4;0.767607!10633-108I3;0.370692!10818-111B8;0.056702!10819-111B9;0.475577!10820-111C1;0.456917!10484-107A7;0.528773!10808-111A7;0.582427!10169-103B7;0.477915!10153-102I9;0.356276!13425-144D5;0.311601!13433-144E4;0.217827!13437-144E8;0.18707!11904-125F5;0.416409!11905-125F6;0.485694!10039-101F3;0.79292!10791-110H8;0.290846!10017-101C8;0.86684!10045-101F9;0.65365!10509-107D5;0.351229!10839-111E2;0.35312!10692-109F8;0.322898!10079-102A7;0.802898!10078-102A6;0.618048!10721-110A1;0.289031!10569-108B2;0.52634!10570-108B3;0.253947!10571-108B4;0.404429!10647-109A8;0.415874!10752-110D5;0.0432894!10782-110G8;0.584767!10726-110A6;0.872878!10018-101C9;0.564892!10086-102B5;0.00141718!10182-103D2;0.316991!10165-103B3;0.530518!10499-107C4;0.460129!10408-106B3;0.0782018!10019-101D1;0.120961!10068-101I5;0.550171!10075-102A3;0.570647!10077-102A5;0.533408!10727-110A7;0.214527!10775-110G1;0.206464!10412-106B7;0.612099!12231-129F8;0.322037!12232-129F9;0.487063!12233-129G1;0.176798!12234-129G2;0.407678!10414-106B9;0.419977!10170-103B8;0.155681!10183-103D3;0.277627!10150-102I6;0.294159!10174-103C3;0.257279!10155-103A2;0.675374!10038-101F2;0.458905!10838-111E1;0.613377!10759-110E3;0.000235797!10514-107E1;0.936881!10465-106H6;0.72408!10691-109F7;0.540124!10843-111E6;0.0129012!10844-111E7;0.0818323!11747-123G1;0.0493704!11748-123G2;0.697668!11749-123G3;0.335632!11750-123G4;0.571028!11751-123G5;0.893777!11840-124H4;0.624406!11752-123G6;0.742659!11753-123G7;0.564776!11754-123G8;0.670315!11755-123G9;0.59242!11756-123H1;0.461948!11833-124G6;0.386194!11760-123H5;0.934248!11836-124G9;0.185483!11758-123H3;0.812593!11835-124G8;0.567907!11762-123H7;0.286515!11838-124H2;0.183992!11757-123H2;0.398705!11759-123H4;0.799868!11761-123H6;0.678362!11842-124H6;0.174099!11837-124H1;0.528696!10568-108B1;0.463594!13230-141I8;0.724414!13231-141I9;0.471063!10696-109G3;0.48898!10493-107B7;0.571704!10494-107B8;0.561637!10850-111F4;0.276618!10851-111F5;0.72578!10852-111F6;0.33953!10853-111F7;0.429492!10854-111F8;0.282385!10855-111F9;0.955904!10856-111G1;0.964342!10847-111F1;0.128497!10846-111E9;0.493051!10848-111F2;0.0868146!10845-111E8;0.00063603!10857-111G2;0.531551!10858-111G3;0.731989!10156-103A3;0.00818803!11901-125F2;0.300568!11902-125F3;0.815134!11903-125F4;0.708681!10689-109F5;0.447264!10648-109A9;0.335597!10784-110H1;0.36381!10744-110C6;0.177481!10772-110F7;0.715912!10474-106I6;0.543492!10600-108E6;0.647462!10684-109E9;0.249232!12226-129F3;0.508484!12227-129F4;0.075145!10508-107D4;0.400142!10539-107G8;0.0161157!10607-108F4;0.0818532!10555-107I6;0.00445646!10774-110F9;0.00819422!10637-108I7;0.290375!10663-109C6;5.83749e-05!10728-110A8;0.00030601!10729-110A9;3.875e-06!10430-106D7;0.208131!10730-110B1;0.516685!10813-111B3;0.00829816!10812-111B2;0.123719!10037-101F1;0.394973!10172-103C1;0.324834!10163-103B1;0.219218!10076-102A4;0.283695!10073-102A1;0.280725!10036-101E9;0.13606!10195-103E6;0.334717!10277-104E7;0.309853!10434-106E2;0.70709!10550-107I1;0.396582!10545-107H5;0.856166!10544-107H4;0.119625!10704-109H2;0.479394!10510-107D6;0.419181!10558-107I9;0.108764!10020-101D2;0.00148599!10732-110B3;0.541087!10049-101G4;0.430606!10698-109G5;0.381248!10437-106E5;0.58078!10417-106C3;0.444474!10035-101E8;0.144553!10171-103B9;0.302613!10157-103A4;0.196091!10034-101E7;0.297075!10072-101I9;0.305857!10199-103F1;0.151477!10200-103F2;0.140074!10697-109G4;0.915594!10723-110A3;0.112609!10179-103C8;0.425518!10160-103A7;0.315859!10180-103C9;0.253583!10162-103A9;0.254723!10021-101D3;0.204458!10840-111E3;0.961014!10706-109H4;0.555102!10033-101E6;0.251251!10032-101E5;0.478003!10490-107B4;0.30524!10439-106E7;0.285097!10022-101D4;0.803451!10176-103C5;0.64043!10469-106I1;0.269086!10067-101I4;0.607299!10411-106B6;0.238475!10471-106I3;0.0329894!10030-101E3;0.0511823!10475-106I7;0.471221!10787-110H4;0.0382387!10477-106I9;0.561791!10695-109G2;0.200799!11771-123I7;0.168407!11772-123I8;0.681381!11773-123I9;0.93718!10093-102C3;0.3226!10442-106F1;0.128207!10442-106F1;0.291855!10201-103F3;0.349228!10639-108I9;0.443317!11843-124H7;0.184945!11841-124H5;0.415632!10693-109F9;0.281266!10436-106E4;0.783411!10483-107A6;0.140297!10282-104F3;0.016131!10023-101D5;0.0289157!10066-101I3;0.130842!10065-101I2;0.707017!10800-110I8;0.875251!10610-108F7;0.00433967!10841-111E4;0.00733395!10541-107H1;0.433157!10842-111E5;0.0730107!10562-108A4;0.0101437!10024-101D6;0.002531!10064-101I1;0.396622!10609-108F6;0.920557!10048-101G3;0.745537!10781-110G7;0.389931!10181-103D1;0.00659912!10159-103A6;0.624395!10056-101H2;0.587002!10737-110B8;0.287069!10025-101D7;0.464777!10044-101F8;0.366909!10424-106D1;0.828695!10463-106H4;0.807414!10616-108G4;0.860145!10486-107A9;0.126103!10062-101H8;0.462518!10202-103F4;0.493683!10158-103A5;0.242723!10441-106E9;0.719283!10031-101E4;0.0281785!10063-101H9;0.347942!10063-101H9;0.134016!11763-123H8;0.628863!11765-123I1;0.528118!11768-123I4;0.864264!10807-111A6;0.730958!10790-110H7;0.0598052!10798-110I6;0.222499!10786-110H3;0.731758!10591-108D6;0.215311!10593-108D8;0.362122!10590-108D5;0.116881!10026-101D8;0.875494!10096-102C6;0.573026!10168-103B6;0.450229!10154-103A1;0.544978!10209-103G2;0.427365!10061-101H7;0.353347!10027-101D9;0.647335!10043-101F7;0.570026!10783-110G9;0.486983!10028-101E1;0.471177!10060-101H6;0.93944!10203-103F5;0.341356!10059-101H5;0.212852!10047-101G2;0.498925!10029-101E2;0.123477!10058-101H4;0.401855!10418-106C4;0.737049!10492-107B6;0.156217!10694-109G1;0.274954!10797-110I5;0.351131!10057-101H3;0.000347208!10100-102D1;0.992942!10055-101H1;0.419208!10204-103F6;0.232615!10191-103E2;0.466106!10563-108A5;0.678257 | ||
|name=motif3 | |name=motif3 | ||
|tomtom_result=PPARG::RXRA#MA0065.2;4;0.000228262;0.108653;0.217306;8;GGGAGAGG;GTAGGGCAAAGGTCA;+!RXR::RAR_DR5#MA0159.1;6;0.00175729;0.836472;0.670539;8;GGGAGAGG;AGGTCATGGAGAGGTCA;+!SP1#MA0079.2;0;0.00211304;1.00581;0.670539;8;GGGAGAGG;GGGGGCGGGG;-!IXR1#MA0323.1;5;0.00487313;2.31961;1;8;GGGAGAGG;AAGCCGGAAGCGGGG;+!GABPA#MA0062.2;3;0.00901561;4.29143;1;7;GGGAGAGG;ACCGGAAGAG;+!LEU3#MA0324.1;2;0.00901561;4.29143;1;8;GGGAGAGG;CCGGTAACGG;-!GABPA#MA0062.2;2;0.0102287;4.86886;1;8;GGGAGAGG;CCGGAAGTGGC;+!HNF4A#MA0114.1;2;0.0103875;4.94446;1;8;GGGAGAGG;AGGCCAAAGGTCA;+!Klf4#MA0039.1;2;0.0122367;5.82467;1;8;GGGAGAGG;TAAAGGAAGG;+!Trl#MA0205.1;0;0.0151557;7.21413;1;8;GGGAGAGG;GAGAGAGCAA;-!SPIB#MA0081.1;-3;0.0190072;9.04742;1;5;GGGAGAGG;AGAGGAA;+ | |||
}} | }} |
Latest revision as of 12:46, 7 September 2012
Full Name: motif3
Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||
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Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
---|---|---|---|---|---|---|---|---|
PPARG::RXRA#MA0065.2 | 4 | 0.000228262 | 0.108653 | 0.217306 | 8 | GGGAGAGG | GTAGGGCAAAGGTCA | + |
RXR::RAR_DR5#MA0159.1 | 6 | 0.00175729 | 0.836472 | 0.670539 | 8 | GGGAGAGG | AGGTCATGGAGAGGTCA | + |
SP1#MA0079.2 | 0 | 0.00211304 | 1.00581 | 0.670539 | 8 | GGGAGAGG | GGGGGCGGGG | - |
IXR1#MA0323.1 | 5 | 0.00487313 | 2.31961 | 1 | 8 | GGGAGAGG | AAGCCGGAAGCGGGG | + |
GABPA#MA0062.2 | 3 | 0.00901561 | 4.29143 | 1 | 7 | GGGAGAGG | ACCGGAAGAG | + |
LEU3#MA0324.1 | 2 | 0.00901561 | 4.29143 | 1 | 8 | GGGAGAGG | CCGGTAACGG | - |
GABPA#MA0062.2 | 2 | 0.0102287 | 4.86886 | 1 | 8 | GGGAGAGG | CCGGAAGTGGC | + |
HNF4A#MA0114.1 | 2 | 0.0103875 | 4.94446 | 1 | 8 | GGGAGAGG | AGGCCAAAGGTCA | + |
Klf4#MA0039.1 | 2 | 0.0122367 | 5.82467 | 1 | 8 | GGGAGAGG | TAAAGGAAGG | + |
Trl#MA0205.1 | 0 | 0.0151557 | 7.21413 | 1 | 8 | GGGAGAGG | GAGAGAGCAA | - |
SPIB#MA0081.1 | -3 | 0.0190072 | 9.04742 | 1 | 5 | GGGAGAGG | AGAGGAA | + |