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MacroAPE 1083:ESR1 do: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;275.8675714965068;53.478175942300396;168.83935934760524;26.510823459456702!2;69.48754239390821;14.187926160733564;381.24015342655366;59.7803...")
 
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34-107G3;0.497646!10429-106D6;0.0970742!10464-106H5;0.00549331!10827-111C8;0.0243502!10789-110H6;0.228161!10828-111C9;0.681299!10788-110H5;0.460772!10792-110H9;0.135681!10765-110E9;0.699172!10829-111D1;0.492039!10830-111D2;0.511522!10831-111D3;0.02544!10832-111D4;0.0627673!10833-111D5;0.440346!10764-110E8;0.411263!10770-110F5;0.205183!10399-106A3;0.718669!10400-106A4;0.613216!10405-106A9;0.689749!10834-111D6;0.612786!10835-111D7;0.189195!10836-111D8;0.530577!10837-111D9;0.141974!10699-109G6;0.386778!10802-111A1;0.331287!10796-110I4;0.449189!10010-101C1;0.78619!10810-111A9;0.00280505!10421-106C7;0.0028434!10708-109H6;0.926575!12235-129G3;0.0148917!12236-129G4;0.265753!12237-129G5;0.64443!10167-103B5;0.541956!10151-102I7;0.720856!10428-106D5;0.553217!10795-110I3;0.307381!10805-111A4;0.372771!10052-101G7;0.0139996!10189-103D9;0.0318011!10589-108D4;0.178889!10425-106D2;0.482225!10427-106D4;0.147484!10702-109G9;0.72601!10432-106D9;0.120112!10496-107C1;0.508343!10718-109I7;0.894702!10011-101C2;0.850396!10053-101G8;0.0243848!10686-109F2;0.663019!10084-102B3;0.605029!10012-101C3;0.797892!10085-102B4;0.949492!10482-107A5;0.22759!10419-106C5;0.48785!10080-102A8;0.14599!10760-110E4;0.141873!10709-109H7;0.0928696!10710-109H8;0.463474!10703-109H1;0.560136!10719-109I8;0.116112!10642-109A3;7.99151e-05!10177-103C6;0.00139013!10164-103B2;0.981643!10173-103C2;0.756115!10166-103B4;0.335835!10083-102B2;0.423972!10188-103D8;0.932938!10552-107I3;0.748512!10553-107I4;0.870366!10013-101C4;0.0144453!10536-107G5;0.00853433!10618-108G6;0.436693!10423-106C9;0.120826!10785-110H2;0.131623!12238-129G6;0.434119!12239-129G7;0.0493757!12240-129G8;0.0468792!10416-106C2;0.0207226!10801-110I9;0.525689!10766-110F1;0.848526!10824-111C5;0.985065!10825-111C6;0.682133!10826-111C7;0.582551!10454-106G4;0.552641!10409-106B4;0.458796!10638-108I8;0.354741!10636-108I6;0.942716!10513-107D9;0.651181!10420-106C6;0.123935!10082-102B1;0.0134793!10014-101C5;0.124206!10070-101I7;0.0159415!10452-106G2;0.196092!10453-106G3;0.0791963!10449-106F8;0.1654!10042-101F6;0.162198!10069-101I6;0.47513!10193-103E4;1.3554e-05!10631-108I1;0.890449!10438-106E6;0.0751112!10488-107B2;0.137233!10196-103E7;0.0908872!10071-101I8;0.0233431!10071-101I8;0.0867848!10041-101F5;0.105321!10451-106G1;0.22526!10450-106F9;0.00877904!10604-108F1;0.000303782!10605-108F2;0.0471364!10606-108F3;0.0341867!10603-108E9;0.0639785!10497-107C2;0.0742206!10448-106F7;0.420601!10643-109A4;0.0259707!10426-106D3;0.601483!10431-106D8;0.108383!10197-103E8;0.0981737!10443-106F2;0.000127634!10815-111B5;0.192415!10816-111B6;0.654174!10817-111B7;0.298115!10015-101C6;0.525837!10410-106B5;0.00430856!10054-101G9;0.0445945!10758-110E2;0.0735244!10711-109H9;0.033417!10040-101F4;0.0168797!10470-106I2;0.840841!10415-106C1;0.31031!10198-103E9;0.664933!10614-108G2;0.00614896!10612-108F9;0.925634!10549-107H9;0.475133!10615-108G3;0.00276544!10487-107B1;0.0464714!10433-106E1;0.836872!10688-109F4;0.167635!10444-106F3;0.392479!10444-106F3;0.0605593!10485-107A8;0.076507!10413-106B8;0.000132414!10175-103C4;0.731381!10161-103A8;0.897356!12131-128D7;0.853132!10624-108H3;0.00937761!10712-109I1;0.866165!10205-103F7;0.64755!10206-103F8;0.00100497!10207-103F9;0.000356466!10050-101G5;0.045781!10051-101G6;0.000911026!10016-101C7;2.77388e-05!10046-101G1;0.000774433!10778-110G4;0.00533309!10633-108I3;0.225317!10818-111B8;0.0111737!10819-111B9;0.797535!10820-111C1;0.613989!10484-107A7;0.672726!10808-111A7;0.330046!10169-103B7;0.138468!10153-102I9;0.896974!13425-144D5;0.739655!13433-144E4;0.006906!13437-144E8;0.00777791!11904-125F5;0.0312883!11905-125F6;0.488954!10039-101F3;0.196382!10791-110H8;0.834524!10017-101C8;0.0499428!10045-101F9;0.00236009!10509-107D5;0.203744!10839-111E2;0.309584!10692-109F8;0.507115!10079-102A7;0.000817563!10078-102A6;9.10517e-05!10721-110A1;0.000748427!10569-108B2;0.00360881!10570-108B3;0.447974!10571-108B4;0.0788742!10647-109A8;0.722851!10752-110D5;0.00116253!10782-110G8;0.0525662!10726-110A6;0.2627!10018-101C9;0.0345538!10086-102B5;0.000483111!10182-103D2;0.0313995!10165-103B3;0.913442!10499-107C4;0.704411!10408-106B3;0.78324!10019-101D1;0.828758!10068-101I5;0.081182!10075-102A3;0.0646197!10077-102A5;0.0255126!10727-110A7;0.186642!10775-110G1;0.229254!10412-106B7;0.163749!12231-129F8;0.00197671!12232-129F9;0.560101!12233-129G1;0.127921!12234-129G2;0.159816!10414-106B9;0.482657!10170-103B8;0.00868804!10183-103D3;0.906528!10150-102I6;0.71734!10174-103C3;0.660733!10155-103A2;0.38775!10038-101F2;0.627572!10838-111E1;0.382133!10759-110E3;3.31444e-05!10514-107E1;0.00318619!10465-106H6;0.272115!10691-109F7;0.0312961!10843-111E6;0.958601!10844-111E7;0.017308!11747-123G1;0.00604466!11748-123G2;0.290032!11749-123G3;0.152349!11750-123G4;0.234594!11751-123G5;0.0586374!11840-124H4;0.0374045!11752-123G6;0.0184093!11753-123G7;0.00410995!11754-123G8;0.0164058!11755-123G9;0.314874!11756-123H1;0.649997!11833-124G6;0.778854!11760-123H5;0.0127457!11836-124G9;0.436948!11758-123H3;0.103268!11835-124G8;0.161603!11762-123H7;0.0280227!11838-124H2;0.00359766!11757-123H2;0.0902983!11759-123H4;0.811613!11761-123H6;0.0321276!11842-124H6;0.0607275!11837-124H1;0.0928363!10568-108B1;0.0253262!13230-141I8;0.69502!13231-141I9;0.0731944!10696-109G3;0.243749!10493-107B7;0.71265!10494-107B8;0.071615!10850-111F4;0.182011!10851-111F5;0.432992!10852-111F6;0.0660229!10853-111F7;0.486806!10854-111F8;0.54969!10855-111F9;0.293421!10856-111G1;0.564163!10847-111F1;0.54312!10846-111E9;0.0837249!10848-111F2;0.605572!10845-111E8;0.929181!10857-111G2;0.249259!10858-111G3;0.785391!10156-103A3;0.802749!11901-125F2;0.614903!11902-125F3;0.667756!11903-125F4;0.454645!10689-109F5;0.630383!10648-109A9;0.752743!10784-110H1;0.0249222!10744-110C6;0.132544!10772-110F7;0.838436!10474-106I6;0.146455!10600-108E6;0.990441!10684-109E9;0.139697!12226-129F3;0.963719!12227-129F4;0.363081!10508-107D4;0.203079!10539-107G8;0.00155473!10607-108F4;0.0363296!10555-107I6;0.000111301!10774-110F9;0.0153898!10637-108I7;1.78329e-06!10663-109C6;8.73485e-05!10728-110A8;2.32045e-05!10729-110A9;1.04338e-05!10430-106D7;0.930166!10730-110B1;0.0286014!10813-111B3;0.107794!10812-111B2;0.143875!10037-101F1;0.317087!10172-103C1;0.916299!10163-103B1;0.703921!10076-102A4;0.630888!10073-102A1;0.731857!10036-101E9;0.120696!10195-103E6;0.913936!10277-104E7;0.927927!10434-106E2;0.720754!10550-107I1;0.0535065!10545-107H5;0.0270513!10544-107H4;0.179886!10704-109H2;0.280377!10510-107D6;0.663443!10558-107I9;0.000325645!10020-101D2;0.184488!10732-110B3;0.0574109!10049-101G4;0.17266!10698-109G5;0.0496806!10437-106E5;0.0643175!10417-106C3;0.567883!10035-101E8;0.744378!10171-103B9;0.872111!10157-103A4;0.651845!10034-101E7;0.664786!10072-101I9;0.909361!10199-103F1;0.0630306!10200-103F2;0.00014097!10697-109G4;7.81321e-05!10723-110A3;0.0289193!10179-103C8;0.650403!10160-103A7;0.478343!10180-103C9;0.65085!10162-103A9;0.155539!10021-101D3;0.966483!10840-111E3;0.0028573!10706-109H4;0.392014!10033-101E6;0.32417!10032-101E5;0.736446!10490-107B4;0.954427!10439-106E7;0.888687!10022-101D4;0.0438441!10176-103C5;0.0538859!10469-106I1;0.726219!10067-101I4;0.34445!10411-106B6;0.996875!10471-106I3;0.183971!10030-101E3;0.662119!10475-106I7;0.0167925!10787-110H4;0.00860194!10477-106I9;0.0119402!10695-109G2;0.00114888!11771-123I7;0.901278!11772-123I8;0.0149516!11773-123I9;0.126955!10093-102C3;0.1911!10442-106F1;2.25207e-05!10442-106F1;0.21764!10201-103F3;0.0766918!10639-108I9;0.00319688!11843-124H7;0.757337!11841-124H5;0.574198!10693-109F9;0.166731!10436-106E4;0.694198!10483-107A6;0.585226!10282-104F3;0.443637!10023-101D5;5.6875e-09!10066-101I3;1.00155e-06!10065-101I2;0.00309891!10800-110I8;0.00680481!10610-108F7;0.0145063!10841-111E4;0.093863!10541-107H1;0.0666244!10842-111E5;1.29674e-05!10562-108A4;0.00673459!10024-101D6;0.0715588!10064-101I1;0.000937745!10609-108F6;0.0275971!10048-101G3;0.273069!10781-110G7;0.0337196!10181-103D1;0.0228917!10159-103A6;0.610489!10056-101H2;0.707277!10737-110B8;0.777842!10025-101D7;0.55532!10044-101F8;0.595772!10424-106D1;0.350095!10463-106H4;0.215952!10616-108G4;0.402679!10486-107A9;0.441818!10062-101H8;0.5749!10202-103F4;0.31862!10158-103A5;2.42926e-05!10441-106E9;0.346635!10031-101E4;7.26168e-06!10063-101H9;0.981241!10063-101H9;0.0565366!11763-123H8;0.0400159!11765-123I1;0.0917992!11768-123I4;0.0524837!10807-111A6;0.211201!10790-110H7;0.00131918!10798-110I6;6.181e-05!10786-110H3;0.00786688!10591-108D6;0.000262252!10593-108D8;0.0191425!10590-108D5;0.00612004!10026-101D8;0.0193592!10096-102C6;0.000248824!10168-103B6;0.335641!10154-103A1;0.99165!10209-103G2;0.936016!10061-101H7;2.41861e-05!10027-101D9;0.0228535!10043-101F7;0.00287616!10783-110G9;0.00947952!10028-101E1;0.173389!10060-101H6;0.000692388!10203-103F5;0.0055145!10059-101H5;2.47616e-06!10047-101G2;2.73866e-05!10029-101E2;0.000309398!10058-101H4;0.00383664!10418-106C4;0.00399396!10492-107B6;0.0192672!10694-109G1;0.13927!10797-110I5;0.0961557!10057-101H3;0.437412!10100-102D1;0.000712557!10055-101H1;0.037228!10204-103F6;0.582497!10191-103E2;0.396903!10563-108A5;0.00345261
|name=ESR1_do
|name=ESR1_do
|tomtom_result=ESR1#MA0112.2;0;1.40861e-21;6.70499e-19;1.31852e-18;18;AGGTCACGGTGACCTGGG;AGGTCAGGGTGACCTGGGCC;-!ESR2#MA0258.1;2;7.78309e-14;3.70475e-11;3.64264e-11;16;AGGTCACGGTGACCTGGG;CAAGGTCACGGTGACCTG;+!ESR1#MA0112.2;1;1.30015e-11;6.18871e-09;4.05664e-09;17;AGGTCACGGTGACCTGGG;GGGGTCACGGTGACCTGG;-!PPARG#MA0066.1;3;3.74058e-09;1.78051e-06;7.00267e-07;17;AGGTCACGGTGACCTGGG;AGTAGGTCACCGTGACCTAC;-!NR4A2#MA0160.1;-8;0.000220503;0.10496;0.0229333;8;AGGTCACGGTGACCTGGG;GTGACCTT;-!RXR::RAR_DR5#MA0159.1;0;0.000281742;0.134109;0.0257805;17;AGGTCACGGTGACCTGGG;AGGTCATGGAGAGGTCA;+!usp#MA0016.1;1;0.000613617;0.292082;0.0478642;9;AGGTCACGGTGACCTGGG;GGGGTCACGG;+!Pax2#MA0067.1;-1;0.00126515;0.602212;0.0804878;8;AGGTCACGGTGACCTGGG;AGTCACGG;+!Ar#MA0007.1;4;0.00128981;0.613951;0.0804878;18;AGGTCACGGTGACCTGGG;GGCGGGTACACGATGTTCTTAT;-!NR3C1#MA0113.1;1;0.00288086;1.37129;0.158624;17;AGGTCACGGTGACCTGGG;GGGAACATTATGTCCTAT;+!CREB1#MA0018.1;-4;0.00680756;3.2404;0.322845;12;AGGTCACGGTGACCTGGG;CCTGGTGACGTC;+!ABF1#MA0265.1;0;0.0068981;3.28349;0.322845;16;AGGTCACGGTGACCTGGG;ATATCACTTTATACGA;-!DOT6#MA0351.1;0;0.00799376;3.80503;0.356309;18;AGGTCACGGTGACCTGGG;AGGATGCGATGAGGTGCAGAA;-!RORA_1#MA0071.1;4;0.00904794;4.30682;0.384966;6;AGGTCACGGTGACCTGGG;ATCAAGGTCA;+!Pax4#MA0068.1;1;0.0094967;4.52043;0.386491;18;AGGTCACGGTGACCTGGG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!RXRA::VDR#MA0074.1;0;0.0109007;5.18875;0.417012;15;AGGTCACGGTGACCTGGG;GGGTCAACGAGTTCA;+!GAL4#MA0299.1;-1;0.0136984;6.52043;0.451492;15;AGGTCACGGTGACCTGGG;GAGTACTGTTCCCCG;-!Pax5#MA0014.1;0;0.0139408;6.63584;0.451492;18;AGGTCACGGTGACCTGGG;GGAGCACTGAAGCGTAACCG;+!NRG1#MA0347.1;2;0.0144703;6.88784;0.451492;18;AGGTCACGGTGACCTGGG;CTAGATCAGGGTCCATCGCA;+!TOD6#MA0350.1;0;0.0153226;7.29354;0.461842;18;AGGTCACGGTGACCTGGG;AAAACGCGATGAGCTGTGCCT;-!NFE2L1::MafG#MA0089.1;-2;0.0163954;7.80421;0.461842;6;AGGTCACGGTGACCTGGG;GTCATG;-!USV1#MA0413.1;4;0.0167756;7.98518;0.461842;16;AGGTCACGGTGACCTGGG;CACAAATTCAGGGGGAATTT;-!Esrrb#MA0141.1;-3;0.0191607;9.12052;0.498201;12;AGGTCACGGTGACCTGGG;TGACCTTGAGCT;-!bZIP910#MA0096.1;0;0.0208454;9.92241;0.527355;7;AGGTCACGGTGACCTGGG;ACGTCAT;-
}}
}}

Latest revision as of 13:01, 7 September 2012

Full Name: ESR1_do

Motif matrix
POACGT
1275.867571496506853.478175942300396168.8393593476052426.510823459456702
269.4875423939082114.187926160733564381.2401534265536659.7803082646724
39.2748915120353517.459524932348526503.33849914989544.623014651587885
47.31182755532818619.55818878707600264.33683740888853433.4890764945753
51.4407483802056216480.2522881008162628.83308029911135514.169813465734691
6475.043858698077114.198675674594228.40681994491217627.046575928284057
738.374504356327805210.56661585000725207.0380030723168.71680696722429
8104.84021579394297136.87168663522777208.747272421904574.23675539479534
975.87018763167157133.26245250357542222.8056139006163592.7576762100062
1043.377511964327267.7768751357988916.586719067363536396.95482407837835
1140.7517982352363660.67385570793265411.8738739430753511.396402359623512
12274.1703411307238128.6340630950569468.3495519488816553.5419740712072
1319.705886164096345426.792923807772333.58766805692851444.609452217070825
1417.46907410999317452.045779813014218.34450885825450736.83656746460605
1566.22435951072443130.075106733108912.28965454503716316.1068094569983
1658.1416488997888113.58218984453902238.23777536539225114.73431613614952
17151.808996823846987.04320313048034207.9565835049374477.88714678660543
1891.10160310438093170.5575374157758190.5407056389137572.49608408679907

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ESR1#MA0112.201.40861e-216.70499e-191.31852e-1818AGGTCACGGTGACCTGGGAGGTCAGGGTGACCTGGGCC-
ESR2#MA0258.127.78309e-143.70475e-113.64264e-1116AGGTCACGGTGACCTGGGCAAGGTCACGGTGACCTG+
ESR1#MA0112.211.30015e-116.18871e-094.05664e-0917AGGTCACGGTGACCTGGGGGGGTCACGGTGACCTGG-
PPARG#MA0066.133.74058e-091.78051e-067.00267e-0717AGGTCACGGTGACCTGGGAGTAGGTCACCGTGACCTAC-
NR4A2#MA0160.1-80.0002205030.104960.02293338AGGTCACGGTGACCTGGGGTGACCTT-
RXR::RAR_DR5#MA0159.100.0002817420.1341090.025780517AGGTCACGGTGACCTGGGAGGTCATGGAGAGGTCA+
usp#MA0016.110.0006136170.2920820.04786429AGGTCACGGTGACCTGGGGGGGTCACGG+
Pax2#MA0067.1-10.001265150.6022120.08048788AGGTCACGGTGACCTGGGAGTCACGG+
Ar#MA0007.140.001289810.6139510.080487818AGGTCACGGTGACCTGGGGGCGGGTACACGATGTTCTTAT-
NR3C1#MA0113.110.002880861.371290.15862417AGGTCACGGTGACCTGGGGGGAACATTATGTCCTAT+
CREB1#MA0018.1-40.006807563.24040.32284512AGGTCACGGTGACCTGGGCCTGGTGACGTC+
ABF1#MA0265.100.00689813.283490.32284516AGGTCACGGTGACCTGGGATATCACTTTATACGA-
DOT6#MA0351.100.007993763.805030.35630918AGGTCACGGTGACCTGGGAGGATGCGATGAGGTGCAGAA-
RORA_1#MA0071.140.009047944.306820.3849666AGGTCACGGTGACCTGGGATCAAGGTCA+
Pax4#MA0068.110.00949674.520430.38649118AGGTCACGGTGACCTGGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
RXRA::VDR#MA0074.100.01090075.188750.41701215AGGTCACGGTGACCTGGGGGGTCAACGAGTTCA+
GAL4#MA0299.1-10.01369846.520430.45149215AGGTCACGGTGACCTGGGGAGTACTGTTCCCCG-
Pax5#MA0014.100.01394086.635840.45149218AGGTCACGGTGACCTGGGGGAGCACTGAAGCGTAACCG+
NRG1#MA0347.120.01447036.887840.45149218AGGTCACGGTGACCTGGGCTAGATCAGGGTCCATCGCA+
TOD6#MA0350.100.01532267.293540.46184218AGGTCACGGTGACCTGGGAAAACGCGATGAGCTGTGCCT-
NFE2L1::MafG#MA0089.1-20.01639547.804210.4618426AGGTCACGGTGACCTGGGGTCATG-
USV1#MA0413.140.01677567.985180.46184216AGGTCACGGTGACCTGGGCACAAATTCAGGGGGAATTT-
Esrrb#MA0141.1-30.01916079.120520.49820112AGGTCACGGTGACCTGGGTGACCTTGAGCT-
bZIP910#MA0096.100.02084549.922410.5273557AGGTCACGGTGACCTGGGACGTCAT-
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