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MacroAPE 1083:GGCAACTTCT,motif638: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;43.656;20.865;234.009;22.47!2;29.211;35.631;218.601;37.557!3;19.26;248.133;35.952;17.655!4;255.195;21.507;17.334;26.964!5;275.739;11.235;14....")
 
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0597-108E3;0.444134!10717-109I6;0.059211!10455-106G5;0.0748792!10534-107G3;0.731892!10429-106D6;0.883161!10464-106H5;0.438171!10827-111C8;0.895476!10789-110H6;0.416644!10828-111C9;0.618491!10788-110H5;0.12152!10792-110H9;0.72535!10765-110E9;0.68143!10829-111D1;0.620146!10830-111D2;0.992632!10831-111D3;0.616352!10832-111D4;0.308435!10833-111D5;0.680119!10764-110E8;0.569545!10770-110F5;0.48678!10399-106A3;0.455334!10400-106A4;0.485613!10405-106A9;0.497394!10834-111D6;0.364863!10835-111D7;0.678549!10836-111D8;0.226441!10837-111D9;0.721974!10699-109G6;0.881042!10802-111A1;0.775402!10796-110I4;0.440785!10010-101C1;0.0868164!10810-111A9;0.216348!10421-106C7;0.378198!10708-109H6;0.586101!12235-129G3;0.0472826!12236-129G4;0.69521!12237-129G5;0.385315!10167-103B5;0.711134!10151-102I7;0.985557!10428-106D5;0.990459!10795-110I3;0.041825!10805-111A4;0.789617!10052-101G7;0.103624!10189-103D9;0.703162!10589-108D4;0.232224!10425-106D2;0.0829304!10427-106D4;0.202715!10702-109G9;0.651538!10432-106D9;0.602671!10496-107C1;0.31156!10718-109I7;0.491113!10011-101C2;0.767144!10053-101G8;0.463405!10686-109F2;0.0451555!10084-102B3;0.692822!10012-101C3;0.234523!10085-102B4;0.84117!10482-107A5;0.0748011!10419-106C5;0.254884!10080-102A8;0.125248!10760-110E4;0.631765!10709-109H7;0.0604528!10710-109H8;0.0128193!10703-109H1;0.209181!10719-109I8;0.000805286!10642-109A3;0.00983479!10177-103C6;0.0192164!10164-103B2;0.583244!10173-103C2;0.697507!10166-103B4;0.429477!10083-102B2;0.768266!10188-103D8;0.130234!10552-107I3;0.60685!10553-107I4;0.065447!10013-101C4;0.510753!10536-107G5;0.59197!10618-108G6;0.960275!10423-106C9;0.0564832!10785-110H2;0.107769!12238-129G6;0.00670093!12239-129G7;0.978007!12240-129G8;0.790243!10416-106C2;0.54037!10801-110I9;0.77003!10766-110F1;0.607943!10824-111C5;0.5893!10825-111C6;0.219645!10826-111C7;0.275099!10454-106G4;0.324576!10409-106B4;0.220597!10638-108I8;0.716759!10636-108I6;0.0659285!10513-107D9;0.300582!10420-106C6;0.238207!10082-102B1;0.0392613!10014-101C5;0.769084!10070-101I7;0.6885!10452-106G2;0.779729!10453-106G3;0.334386!10449-106F8;0.653947!10042-101F6;0.607425!10069-101I6;0.726848!10193-103E4;0.742281!10631-108I1;0.620623!10438-106E6;0.909653!10488-107B2;0.0419342!10196-103E7;0.251173!10071-101I8;0.98278!10071-101I8;0.570437!10041-101F5;0.091732!10451-106G1;0.439831!10450-106F9;0.430187!10604-108F1;0.280893!10605-108F2;0.0515814!10606-108F3;0.32363!10603-108E9;0.203037!10497-107C2;0.23258!10448-106F7;0.135145!10643-109A4;0.542828!10426-106D3;0.202986!10431-106D8;0.391726!10197-103E8;0.16019!10443-106F2;0.994907!10815-111B5;0.244871!10816-111B6;0.260956!10817-111B7;0.189546!10015-101C6;0.250222!10410-106B5;0.819099!10054-101G9;0.665903!10758-110E2;0.507825!10711-109H9;0.705739!10040-101F4;0.89727!10470-106I2;0.640003!10415-106C1;0.10684!10198-103E9;0.52339!10614-108G2;0.661002!10612-108F9;0.228927!10549-107H9;0.728603!10615-108G3;0.140739!10487-107B1;0.0128556!10433-106E1;0.154746!10688-109F4;0.629617!10444-106F3;0.234453!10444-106F3;0.910673!10485-107A8;0.951246!10413-106B8;0.0731064!10175-103C4;0.0585711!10161-103A8;0.516232!12131-128D7;0.754825!10624-108H3;0.317217!10712-109I1;0.118199!10205-103F7;0.93284!10206-103F8;0.868608!10207-103F9;0.780044!10050-101G5;0.339075!10051-101G6;0.238975!10016-101C7;0.950777!10046-101G1;0.636368!10778-110G4;0.86572!10633-108I3;0.337391!10818-111B8;0.0794321!10819-111B9;0.198284!10820-111C1;0.217582!10484-107A7;0.255169!10808-111A7;0.0672847!10169-103B7;0.799495!10153-102I9;0.867666!13425-144D5;0.977912!13433-144E4;0.00453139!13437-144E8;0.00554951!11904-125F5;0.00582152!11905-125F6;0.0038929!10039-101F3;0.165155!10791-110H8;0.594091!10017-101C8;0.35673!10045-101F9;0.868461!10509-107D5;0.676095!10839-111E2;0.671595!10692-109F8;0.00345768!10079-102A7;0.390102!10078-102A6;0.926644!10721-110A1;0.876922!10569-108B2;0.0424782!10570-108B3;0.809324!10571-108B4;0.607788!10647-109A8;0.583645!10752-110D5;0.545183!10782-110G8;0.800982!10726-110A6;0.5132!10018-101C9;0.0540491!10086-102B5;0.5288!10182-103D2;0.0363929!10165-103B3;0.627512!10499-107C4;0.991723!10408-106B3;0.0871884!10019-101D1;0.179174!10068-101I5;0.361006!10075-102A3;0.600067!10077-102A5;0.466797!10727-110A7;0.0219106!10775-110G1;0.38793!10412-106B7;0.338741!12231-129F8;0.700437!12232-129F9;0.812631!12233-129G1;0.276823!12234-129G2;0.356775!10414-106B9;0.522975!10170-103B8;0.0103341!10183-103D3;0.693858!10150-102I6;0.654265!10174-103C3;0.970415!10155-103A2;0.635597!10038-101F2;0.978037!10838-111E1;0.813476!10759-110E3;0.166913!10514-107E1;0.261479!10465-106H6;0.548584!10691-109F7;0.163988!10843-111E6;0.774166!10844-111E7;0.0172297!11747-123G1;0.0418143!11748-123G2;0.797474!11749-123G3;0.932536!11750-123G4;0.632802!11751-123G5;0.399395!11840-124H4;0.51448!11752-123G6;0.978887!11753-123G7;0.69224!11754-123G8;0.360649!11755-123G9;0.79409!11756-123H1;0.269443!11833-124G6;0.483148!11760-123H5;0.125655!11836-124G9;0.31497!11758-123H3;0.348153!11835-124G8;0.218014!11762-123H7;0.484136!11838-124H2;0.774038!11757-123H2;0.941024!11759-123H4;0.233497!11761-123H6;0.304922!11842-124H6;0.525356!11837-124H1;0.569137!10568-108B1;0.447705!13230-141I8;0.11887!13231-141I9;0.683984!10696-109G3;0.4772!10493-107B7;0.655335!10494-107B8;0.207201!10850-111F4;0.163422!10851-111F5;0.3546!10852-111F6;0.639735!10853-111F7;0.982461!10854-111F8;0.362792!10855-111F9;0.534472!10856-111G1;0.206259!10847-111F1;0.0945298!10846-111E9;0.437514!10848-111F2;0.207819!10845-111E8;0.196456!10857-111G2;0.284711!10858-111G3;0.0933268!10156-103A3;0.875375!11901-125F2;0.941483!11902-125F3;0.0998913!11903-125F4;0.264991!10689-109F5;0.420981!10648-109A9;0.00740002!10784-110H1;0.041175!10744-110C6;0.220932!10772-110F7;0.125275!10474-106I6;0.752873!10600-108E6;0.677336!10684-109E9;0.909981!12226-129F3;0.565343!12227-129F4;0.113172!10508-107D4;0.755554!10539-107G8;0.19065!10607-108F4;0.114023!10555-107I6;0.190114!10774-110F9;0.115264!10637-108I7;0.0710941!10663-109C6;0.336267!10728-110A8;0.222467!10729-110A9;0.126642!10430-106D7;0.638624!10730-110B1;0.737184!10813-111B3;0.00143949!10812-111B2;0.942964!10037-101F1;0.705888!10172-103C1;0.64601!10163-103B1;0.844783!10076-102A4;0.933643!10073-102A1;0.397449!10036-101E9;0.0331003!10195-103E6;0.527518!10277-104E7;0.579655!10434-106E2;0.269806!10550-107I1;0.262567!10545-107H5;0.21374!10544-107H4;0.482911!10704-109H2;0.149596!10510-107D6;0.543598!10558-107I9;0.385511!10020-101D2;0.0798348!10732-110B3;0.944471!10049-101G4;0.102751!10698-109G5;0.362694!10437-106E5;0.185342!10417-106C3;0.527321!10035-101E8;0.540874!10171-103B9;0.68881!10157-103A4;0.755003!10034-101E7;0.983431!10072-101I9;0.707907!10199-103F1;0.085342!10200-103F2;0.739985!10697-109G4;0.821141!10723-110A3;0.292357!10179-103C8;0.139112!10160-103A7;0.904934!10180-103C9;0.723485!10162-103A9;0.18386!10021-101D3;0.84615!10840-111E3;0.723459!10706-109H4;0.769577!10033-101E6;0.977238!10032-101E5;0.747301!10490-107B4;0.535657!10439-106E7;0.00543897!10022-101D4;0.13628!10176-103C5;0.590654!10469-106I1;0.536064!10067-101I4;0.0521322!10411-106B6;0.295072!10471-106I3;0.0826676!10030-101E3;0.113186!10475-106I7;0.866721!10787-110H4;0.0672171!10477-106I9;0.516973!10695-109G2;0.549719!11771-123I7;0.778198!11772-123I8;0.895559!11773-123I9;0.877301!10093-102C3;0.969359!10442-106F1;0.797842!10442-106F1;0.195152!10201-103F3;0.279001!10639-108I9;0.743561!11843-124H7;0.500107!11841-124H5;0.0373146!10693-109F9;0.00996269!10436-106E4;0.0143527!10483-107A6;0.378226!10282-104F3;0.260866!10023-101D5;0.874536!10066-101I3;0.586634!10065-101I2;0.291552!10800-110I8;0.822032!10610-108F7;0.100232!10841-111E4;0.0280622!10541-107H1;0.366319!10842-111E5;0.255489!10562-108A4;0.0308231!10024-101D6;0.00800841!10064-101I1;0.707393!10609-108F6;0.515928!10048-101G3;0.0312194!10781-110G7;0.859074!10181-103D1;0.229358!10159-103A6;0.651195!10056-101H2;0.630772!10737-110B8;0.229874!10025-101D7;0.556044!10044-101F8;0.0299653!10424-106D1;0.11398!10463-106H4;0.79815!10616-108G4;0.524041!10486-107A9;0.789157!10062-101H8;0.562429!10202-103F4;0.588329!10158-103A5;0.834087!10441-106E9;0.645865!10031-101E4;0.275881!10063-101H9;0.571422!10063-101H9;0.0763049!11763-123H8;0.911267!11765-123I1;0.323757!11768-123I4;0.252878!10807-111A6;0.103658!10790-110H7;0.0578982!10798-110I6;0.00953861!10786-110H3;0.708803!10591-108D6;0.000534016!10593-108D8;0.0399691!10590-108D5;0.0411952!10026-101D8;0.0181754!10096-102C6;0.365658!10168-103B6;0.0441427!10154-103A1;0.707669!10209-103G2;0.896704!10061-101H7;0.820208!10027-101D9;0.633222!10043-101F7;0.00438694!10783-110G9;0.000447504!10028-101E1;0.296665!10060-101H6;0.801562!10203-103F5;0.471503!10059-101H5;0.880825!10047-101G2;0.687469!10029-101E2;0.0996811!10058-101H4;0.542871!10418-106C4;0.65707!10492-107B6;0.734891!10694-109G1;0.264777!10797-110I5;0.885878!10057-101H3;0.216271!10100-102D1;0.775551!10055-101H1;0.52232!10204-103F6;0.702664!10191-103E2;0.1835!10563-108A5;0.201013
|name=GGCAACTTCT,motif638,CNhs13549,T:321.0(8.75%),B:3363.9(4.38%),P:1e-29
|name=GGCAACTTCT,motif638,CNhs13549,T:321.0(8.75%),B:3363.9(4.38%),P:1e-29
|tomtom_result=Myf#MA0055.1;1;0.00219871;1.04659;1;10;GGCAACTTCT;CAGCAGCTGCTG;+!En1#MA0027.1;0;0.0044568;2.12144;1;10;GGCAACTTCT;GAACACTACTT;-!GABPA#MA0062.2;-1;0.0114756;5.46236;1;9;GGCAACTTCT;GCCACTTCCGG;-!RFX1#MA0365.1;1;0.0141854;6.75223;1;7;GGCAACTTCT;TGGCAACC;-!RELA#MA0107.1;0;0.0167025;7.95038;1;10;GGCAACTTCT;GGGAATTTCC;+!SPI1#MA0080.2;-4;0.0207609;9.88219;1;6;GGCAACTTCT;ACTTCCT;-
}}
}}

Latest revision as of 13:06, 7 September 2012

Full Name: GGCAACTTCT,motif638,CNhs13549,T:321.0(8.75%),B:3363.9(4.38%),P:1e-29

Motif matrix
POACGT
143.65620.865234.00922.47
229.21135.631218.60137.557
319.26248.13335.95217.655
4255.19521.50717.33426.964
5275.73911.23514.44519.581
613.803278.62814.44514.124
722.14916.69223.754258.405
816.0514.44517.334273.171
920.223288.2589.9512.568
104.17363.55812.519240.75

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Myf#MA0055.110.002198711.04659110GGCAACTTCTCAGCAGCTGCTG+
En1#MA0027.100.00445682.12144110GGCAACTTCTGAACACTACTT-
GABPA#MA0062.2-10.01147565.4623619GGCAACTTCTGCCACTTCCGG-
RFX1#MA0365.110.01418546.7522317GGCAACTTCTTGGCAACC-
RELA#MA0107.100.01670257.95038110GGCAACTTCTGGGAATTTCC+
SPI1#MA0080.2-40.02076099.8821916GGCAACTTCTACTTCCT-
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