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MacroAPE 1083:13-MGCTGACACACGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2309.094;1888.494;4.206;4.206!2;353.304;42.06;3806.43;4.206!3;4.206;3120.852;1076.736;4.206!4;4.206;4.206;4.206;4193.382!5;4.206;1539.396;26...")
 
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7-128I8;0.64889!12182-129A4;0.613904!12183-129A5;0.529304!12184-129A6;0.701632!10809-111A8;0.735308!10597-108E3;0.145996!10717-109I6;0.666986!10455-106G5;0.00150983!10534-107G3;0.192118!10429-106D6;0.574784!10464-106H5;0.613227!10827-111C8;0.529246!10789-110H6;0.974506!10828-111C9;0.601244!10788-110H5;0.693144!10792-110H9;0.822587!10765-110E9;0.863923!10829-111D1;0.809833!10830-111D2;0.892141!10831-111D3;0.712696!10832-111D4;0.811909!10833-111D5;0.979999!10764-110E8;0.915355!10770-110F5;0.388555!10399-106A3;0.874477!10400-106A4;0.437606!10405-106A9;0.695633!10834-111D6;0.794276!10835-111D7;0.381256!10836-111D8;0.729825!10837-111D9;0.625028!10699-109G6;0.207246!10802-111A1;0.966252!10796-110I4;0.231089!10010-101C1;0.0996817!10810-111A9;0.0745809!10421-106C7;0.017633!10708-109H6;0.711014!12235-129G3;0.00998833!12236-129G4;0.784995!12237-129G5;0.215896!10167-103B5;0.601787!10151-102I7;0.00318763!10428-106D5;0.00440426!10795-110I3;0.403519!10805-111A4;0.481865!10052-101G7;0.0793611!10189-103D9;0.257634!10589-108D4;0.742442!10425-106D2;0.314158!10427-106D4;0.0119672!10702-109G9;0.480243!10432-106D9;0.349599!10496-107C1;0.0859267!10718-109I7;0.41347!10011-101C2;0.61714!10053-101G8;0.185334!10686-109F2;0.250392!10084-102B3;0.964222!10012-101C3;0.00752874!10085-102B4;0.00273001!10482-107A5;0.124072!10419-106C5;0.325354!10080-102A8;0.52582!10760-110E4;0.298789!10709-109H7;0.0159829!10710-109H8;0.00276218!10703-109H1;0.00195118!10719-109I8;0.571125!10642-109A3;0.773403!10177-103C6;0.55612!10164-103B2;0.0125755!10173-103C2;0.0129321!10166-103B4;0.0740783!10083-102B2;0.0307327!10188-103D8;0.106275!10552-107I3;0.00331214!10553-107I4;0.0529858!10013-101C4;0.193228!10536-107G5;0.719427!10618-108G6;0.0924523!10423-106C9;0.430087!10785-110H2;0.105724!12238-129G6;0.239799!12239-129G7;0.561878!12240-129G8;0.294477!10416-106C2;0.285888!10801-110I9;0.0233663!10766-110F1;0.417528!10824-111C5;0.363534!10825-111C6;0.779817!10826-111C7;0.66224!10454-106G4;0.708735!10409-106B4;0.712625!10638-108I8;0.234947!10636-108I6;0.00145303!10513-107D9;0.346072!10420-106C6;0.00230921!10082-102B1;0.481596!10014-101C5;0.100581!10070-101I7;0.902134!10452-106G2;0.651602!10453-106G3;0.902296!10449-106F8;0.254104!10042-101F6;0.152495!10069-101I6;0.0230463!10193-103E4;0.247644!10631-108I1;0.0697061!10438-106E6;0.80318!10488-107B2;0.189577!10196-103E7;0.0902185!10071-101I8;0.6216!10071-101I8;0.555409!10041-101F5;0.0656484!10451-106G1;0.0216791!10450-106F9;0.174315!10604-108F1;0.0713953!10605-108F2;0.496374!10606-108F3;0.232932!10603-108E9;0.7205!10497-107C2;0.244727!10448-106F7;0.099958!10643-109A4;0.145993!10426-106D3;0.138184!10431-106D8;0.154544!10197-103E8;0.156926!10443-106F2;0.512158!10815-111B5;0.490153!10816-111B6;0.00176829!10817-111B7;0.00469013!10015-101C6;0.000497254!10410-106B5;0.71619!10054-101G9;0.511291!10758-110E2;0.274134!10711-109H9;0.0343766!10040-101F4;0.0532657!10470-106I2;0.00514714!10415-106C1;0.00533103!10198-103E9;0.0147679!10614-108G2;0.540431!10612-108F9;4.71531e-05!10549-107H9;0.00714622!10615-108G3;0.319591!10487-107B1;0.825329!10433-106E1;0.624474!10688-109F4;0.125255!10444-106F3;0.153745!10444-106F3;0.000641932!10485-107A8;0.00136525!10413-106B8;0.0100312!10175-103C4;0.688692!10161-103A8;0.0391292!12131-128D7;0.01574!10624-108H3;0.0185997!10712-109I1;0.914761!10205-103F7;0.486443!10206-103F8;0.0304629!10207-103F9;0.0382634!10050-101G5;0.0291747!10051-101G6;0.813773!10016-101C7;0.360431!10046-101G1;0.108747!10778-110G4;0.19654!10633-108I3;0.500373!10818-111B8;0.253298!10819-111B9;0.0452906!10820-111C1;0.0473013!10484-107A7;0.0701429!10808-111A7;0.398521!10169-103B7;0.656254!10153-102I9;0.00717887!13425-144D5;0.00313526!13433-144E4;0.00297821!13437-144E8;0.00756839!11904-125F5;0.0060757!11905-125F6;0.104029!10039-101F3;0.18609!10791-110H8;0.00164722!10017-101C8;0.00130404!10045-101F9;0.986004!10509-107D5;0.8842!10839-111E2;0.236083!10692-109F8;0.156073!10079-102A7;0.103906!10078-102A6;0.32064!10721-110A1;0.383462!10569-108B2;0.0622721!10570-108B3;0.366592!10571-108B4;0.776697!10647-109A8;0.401443!10752-110D5;0.481541!10782-110G8;0.962571!10726-110A6;0.429899!10018-101C9;8.76608e-07!10086-102B5;0.664153!10182-103D2;0.251876!10165-103B3;0.00977922!10499-107C4;0.00795152!10408-106B3;0.534319!10019-101D1;0.0111086!10068-101I5;0.386576!10075-102A3;0.24044!10077-102A5;0.900569!10727-110A7;0.399357!10775-110G1;0.846812!10412-106B7;0.968305!12231-129F8;0.707982!12232-129F9;0.336264!12233-129G1;0.165055!12234-129G2;0.269017!10414-106B9;0.421124!10170-103B8;0.490716!10183-103D3;0.015732!10150-102I6;0.00828123!10174-103C3;0.0034529!10155-103A2;0.17046!10038-101F2;0.0107394!10838-111E1;0.00260265!10759-110E3;0.467323!10514-107E1;0.00885723!10465-106H6;0.277664!10691-109F7;0.603563!10843-111E6;0.265589!10844-111E7;0.470933!11747-123G1;0.80953!11748-123G2;0.531694!11749-123G3;0.647667!11750-123G4;0.372775!11751-123G5;0.557438!11840-124H4;0.898026!11752-123G6;0.988377!11753-123G7;0.645663!11754-123G8;0.597831!11755-123G9;0.723255!11756-123H1;0.572519!11833-124G6;0.697195!11760-123H5;0.940292!11836-124G9;0.605894!11758-123H3;0.59941!11835-124G8;0.628709!11762-123H7;0.869114!11838-124H2;0.355077!11757-123H2;0.428818!11759-123H4;0.264317!11761-123H6;0.723779!11842-124H6;0.911121!11837-124H1;0.948591!10568-108B1;0.621636!13230-141I8;0.00140061!13231-141I9;0.837297!10696-109G3;0.864908!10493-107B7;0.00243149!10494-107B8;0.067575!10850-111F4;0.0124264!10851-111F5;5.01075e-05!10852-111F6;0.000196608!10853-111F7;1.50587e-05!10854-111F8;0.000386103!10855-111F9;0.00512624!10856-111G1;1.19791e-07!10847-111F1;0.000604849!10846-111E9;0.00302254!10848-111F2;0.00844428!10845-111E8;2.35273e-06!10857-111G2;0.000280481!10858-111G3;0.000329912!10156-103A3;0.0557628!11901-125F2;0.00213396!11902-125F3;0.562574!11903-125F4;0.366149!10689-109F5;0.613865!10648-109A9;0.476332!10784-110H1;0.0060459!10744-110C6;0.488802!10772-110F7;0.350129!10474-106I6;0.269842!10600-108E6;0.231944!10684-109E9;0.343572!12226-129F3;0.25005!12227-129F4;0.687525!10508-107D4;0.317107!10539-107G8;0.813503!10607-108F4;0.612434!10555-107I6;0.216588!10774-110F9;0.72778!10637-108I7;0.0520432!10663-109C6;0.940475!10728-110A8;0.236888!10729-110A9;0.806683!10430-106D7;0.849979!10730-110B1;0.704881!10813-111B3;0.508022!10812-111B2;0.980444!10037-101F1;0.0976709!10172-103C1;0.00324186!10163-103B1;0.00659871!10076-102A4;0.000919743!10073-102A1;0.00796079!10036-101E9;0.141493!10195-103E6;0.00459676!10277-104E7;0.00713127!10434-106E2;0.671613!10550-107I1;0.151726!10545-107H5;0.0644426!10544-107H4;0.113067!10704-109H2;0.19083!10510-107D6;0.70825!10558-107I9;0.86289!10020-101D2;0.415142!10732-110B3;0.345432!10049-101G4;0.0669063!10698-109G5;0.0306809!10437-106E5;0.432776!10417-106C3;0.0135206!10035-101E8;0.270314!10171-103B9;0.00261371!10157-103A4;0.0131919!10034-101E7;0.000695773!10072-101I9;0.00148474!10199-103F1;0.137801!10200-103F2;0.471477!10697-109G4;0.206157!10723-110A3;0.962263!10179-103C8;0.0123265!10160-103A7;0.0649652!10180-103C9;0.0771387!10162-103A9;0.362237!10021-101D3;0.25789!10840-111E3;0.422472!10706-109H4;0.692297!10033-101E6;0.0485004!10032-101E5;0.00415999!10490-107B4;0.00429716!10439-106E7;0.00449243!10022-101D4;0.00177279!10176-103C5;0.610996!10469-106I1;0.00675795!10067-101I4;0.195256!10411-106B6;0.454122!10471-106I3;0.006934!10030-101E3;0.0224222!10475-106I7;0.314795!10787-110H4;0.222235!10477-106I9;0.328897!10695-109G2;0.441748!11771-123I7;0.688672!11772-123I8;0.268157!11773-123I9;0.495318!10093-102C3;0.717551!10442-106F1;0.45237!10442-106F1;0.328632!10201-103F3;0.602218!10639-108I9;0.235817!11843-124H7;0.00224261!11841-124H5;0.26512!10693-109F9;0.00316205!10436-106E4;0.388077!10483-107A6;0.117877!10282-104F3;0.0185077!10023-101D5;0.178049!10066-101I3;0.0361971!10065-101I2;0.734536!10800-110I8;0.928127!10610-108F7;0.0396006!10841-111E4;0.224107!10541-107H1;0.334238!10842-111E5;0.126795!10562-108A4;0.436382!10024-101D6;0.402986!10064-101I1;0.880029!10609-108F6;0.409187!10048-101G3;0.703939!10781-110G7;0.772224!10181-103D1;0.794665!10159-103A6;0.0273034!10056-101H2;0.00130131!10737-110B8;0.159014!10025-101D7;0.37207!10044-101F8;0.253321!10424-106D1;0.203615!10463-106H4;0.829002!10616-108G4;0.112478!10486-107A9;0.673433!10062-101H8;0.200453!10202-103F4;0.613593!10158-103A5;0.210957!10441-106E9;0.0586187!10031-101E4;0.129781!10063-101H9;0.00284403!10063-101H9;0.120378!11763-123H8;0.819469!11765-123I1;0.303729!11768-123I4;0.789523!10807-111A6;0.411817!10790-110H7;0.00603895!10798-110I6;0.0667935!10786-110H3;0.0619722!10591-108D6;0.0288534!10593-108D8;0.108155!10590-108D5;0.420108!10026-101D8;0.0529371!10096-102C6;0.697504!10168-103B6;0.247583!10154-103A1;0.0368925!10209-103G2;0.0113559!10061-101H7;0.242086!10027-101D9;0.793727!10043-101F7;0.526375!10783-110G9;0.653291!10028-101E1;9.31176e-05!10060-101H6;0.621311!10203-103F5;0.288272!10059-101H5;0.3155!10047-101G2;0.85495!10029-101E2;0.679287!10058-101H4;0.440754!10418-106C4;0.776891!10492-107B6;0.101421!10694-109G1;0.166685!10797-110I5;0.571821!10057-101H3;0.0722393!10100-102D1;0.996689!10055-101H1;0.679338!10204-103F6;0.59515!10191-103E2;0.546074!10563-108A5;0.267695
|name=13-MGCTGACACACGC,CNhs13544,BestGuess:MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer(0.68771280716031),T:4206.0(60.89%),B:22115.3(52.76%),P:1e-41
|name=13-MGCTGACACACGC,CNhs13544,BestGuess:MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer(0.68771280716031),T:4206.0(60.89%),B:22115.3(52.76%),P:1e-41
|tomtom_result=Mafb#MA0117.1;-1;0.000393669;0.187386;0.374773;8;AGCTGACACACGC;GCTGACGG;+!AP1#MA0099.2;-3;0.0022653;1.07828;0.817582;7;AGCTGACACACGC;TGACTCA;+!Fos#MA0099.1;-3;0.00257641;1.22637;0.817582;8;AGCTGACACACGC;TGACTCAC;-!AFT2#MA0270.1;-6;0.00369835;1.76041;0.880207;7;AGCTGACACACGC;CACACCCC;+!Six4#MA0204.1;-3;0.00513967;2.44648;0.978593;6;AGCTGACACACGC;TGATAC;+!CUP9#MA0288.1;-3;0.0083954;3.99621;0.990546;9;AGCTGACACACGC;TGACACATT;+!YAP6#MA0418.1;2;0.00909442;4.32894;0.990546;13;AGCTGACACACGC;GTCGCTTACGTAATCAGACC;-!vis#MA0252.1;-3;0.00936441;4.45746;0.990546;6;AGCTGACACACGC;TGACAG;+!ARG80#MA0271.1;-3;0.00936441;4.45746;0.990546;6;AGCTGACACACGC;AGACGC;+!Arnt::Ahr#MA0006.1;-8;0.0114175;5.43472;1;5;AGCTGACACACGC;CACGCA;-!FHL1#MA0295.1;-4;0.0117148;5.57624;1;8;AGCTGACACACGC;GACGCAAA;+!STE12#MA0393.1;-3;0.0137454;6.54282;1;7;AGCTGACACACGC;TGAAACA;+!Egr1#MA0162.1;1;0.015037;7.15763;1;10;AGCTGACACACGC;CCGCCCACGCA;-!GCN4#MA0303.1;4;0.019579;9.31959;1;13;AGCTGACACACGC;CAAGGGATGAGTCATACTTCA;+
}}
}}

Latest revision as of 18:17, 7 September 2012

Full Name: 13-MGCTGACACACGC,CNhs13544,BestGuess:MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer(0.68771280716031),T:4206.0(60.89%),B:22115.3(52.76%),P:1e-41

Motif matrix
POACGT
12309.0941888.4944.2064.206
2353.30442.063806.434.206
34.2063120.8521076.7364.206
44.2064.2064.2064193.382
54.2061539.3962620.33842.06
63848.49349.0984.2064.206
74.2064193.3824.2064.206
82620.3384.2061577.254.206
9349.0983848.494.2064.206
104193.3824.2064.2064.206
11353.3043045.144765.49242.06
12353.3041417.4222077.764353.304
134.2063831.666365.9224.206

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

Mafb#MA0117.1-10.0003936690.1873860.3747738AGCTGACACACGCGCTGACGG+
AP1#MA0099.2-30.00226531.078280.8175827AGCTGACACACGCTGACTCA+
Fos#MA0099.1-30.002576411.226370.8175828AGCTGACACACGCTGACTCAC-
AFT2#MA0270.1-60.003698351.760410.8802077AGCTGACACACGCCACACCCC+
Six4#MA0204.1-30.005139672.446480.9785936AGCTGACACACGCTGATAC+
CUP9#MA0288.1-30.00839543.996210.9905469AGCTGACACACGCTGACACATT+
YAP6#MA0418.120.009094424.328940.99054613AGCTGACACACGCGTCGCTTACGTAATCAGACC-
vis#MA0252.1-30.009364414.457460.9905466AGCTGACACACGCTGACAG+
ARG80#MA0271.1-30.009364414.457460.9905466AGCTGACACACGCAGACGC+
Arnt::Ahr#MA0006.1-80.01141755.4347215AGCTGACACACGCCACGCA-
FHL1#MA0295.1-40.01171485.5762418AGCTGACACACGCGACGCAAA+
STE12#MA0393.1-30.01374546.5428217AGCTGACACACGCTGAAACA+
Egr1#MA0162.110.0150377.15763110AGCTGACACACGCCCGCCCACGCA-
GCN4#MA0303.140.0195799.31959113AGCTGACACACGCCAAGGGATGAGTCATACTTCA+