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MacroAPE 1083:TTGCAGCGTA,motif613: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;174.72;189.28;129.584;962.416!2;131.04;116.48;133.952;1074.528!3;141.232;139.776;1055.6;119.392!4;123.76;1055.6;135.408;141.232!5;1045.408;1...")
 
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49!10789-110H6;0.932477!10828-111C9;0.897641!10788-110H5;0.742687!10792-110H9;0.686627!10765-110E9;0.720176!10829-111D1;0.690322!10830-111D2;0.808242!10831-111D3;0.938479!10832-111D4;0.956133!10833-111D5;0.629289!10764-110E8;0.830055!10770-110F5;0.727685!10399-106A3;0.812161!10400-106A4;0.936421!10405-106A9;0.994847!10834-111D6;0.910991!10835-111D7;0.883215!10836-111D8;0.802602!10837-111D9;0.962646!10699-109G6;0.988102!10802-111A1;0.945412!10796-110I4;0.93298!10010-101C1;0.506844!10810-111A9;0.20915!10421-106C7;0.470932!10708-109H6;0.907989!12235-129G3;0.76476!12236-129G4;0.387568!12237-129G5;0.913833!10167-103B5;0.455378!10151-102I7;0.174001!10428-106D5;0.278347!10795-110I3;0.646002!10805-111A4;0.550592!10052-101G7;0.691954!10189-103D9;0.51572!10589-108D4;0.0990003!10425-106D2;0.609036!10427-106D4;0.344064!10702-109G9;0.772631!10432-106D9;0.883436!10496-107C1;0.939649!10718-109I7;0.726122!10011-101C2;0.948896!10053-101G8;0.337004!10686-109F2;0.163015!10084-102B3;0.176487!10012-101C3;0.216491!10085-102B4;0.166544!10482-107A5;0.320411!10419-106C5;0.702156!10080-102A8;0.901897!10760-110E4;0.175021!10709-109H7;0.43802!10710-109H8;0.86003!10703-109H1;0.854067!10719-109I8;0.0930597!10642-109A3;0.0518278!10177-103C6;0.178691!10164-103B2;0.196069!10173-103C2;0.228873!10166-103B4;0.0562729!10083-102B2;0.127916!10188-103D8;0.117099!10552-107I3;0.192282!10553-107I4;0.668003!10013-101C4;0.645841!10536-107G5;0.401277!10618-108G6;0.870947!10423-106C9;0.844609!10785-110H2;0.727831!12238-129G6;0.665778!12239-129G7;0.508322!12240-129G8;0.394574!10416-106C2;0.861028!10801-110I9;0.457453!10766-110F1;0.597134!10824-111C5;0.723844!10825-111C6;0.849662!10826-111C7;0.806006!10454-106G4;0.783111!10409-106B4;0.928418!10638-108I8;0.891252!10636-108I6;0.960201!10513-107D9;0.87684!10420-106C6;0.737795!10082-102B1;0.76788!10014-101C5;0.380727!10070-101I7;0.239053!10452-106G2;0.374582!10453-106G3;0.765867!10449-106F8;0.896962!10042-101F6;0.911233!10069-101I6;0.364527!10193-103E4;0.41914!10631-108I1;0.1018!10438-106E6;0.75564!10488-107B2;0.817124!10196-103E7;0.863904!10071-101I8;0.410165!10071-101I8;0.522327!10041-101F5;0.346375!10451-106G1;0.707138!10450-106F9;0.776634!10604-108F1;0.790309!10605-108F2;0.809858!10606-108F3;0.831173!10603-108E9;0.965492!10497-107C2;0.820226!10448-106F7;0.811172!10643-109A4;0.392174!10426-106D3;0.607579!10431-106D8;0.90007!10197-103E8;0.614782!10443-106F2;0.488497!10815-111B5;0.705049!10816-111B6;0.700056!10817-111B7;0.828357!10015-101C6;0.678572!10410-106B5;0.217258!10054-101G9;0.530713!10758-110E2;0.838541!10711-109H9;0.607904!10040-101F4;0.322922!10470-106I2;0.122665!10415-106C1;0.700773!10198-103E9;0.692053!10614-108G2;0.245241!10612-108F9;0.362006!10549-107H9;0.867745!10615-108G3;0.407726!10487-107B1;0.742059!10433-106E1;0.976293!10688-109F4;0.868668!10444-106F3;0.531051!10444-106F3;0.522862!10485-107A8;0.703401!10413-106B8;0.317282!10175-103C4;0.933158!10161-103A8;0.107874!12131-128D7;0.290316!10624-108H3;0.775018!10712-109I1;0.32096!10205-103F7;0.63132!10206-103F8;0.415435!10207-103F9;0.504988!10050-101G5;0.0576864!10051-101G6;0.280925!10016-101C7;0.619219!10046-101G1;0.358556!10778-110G4;0.529904!10633-108I3;0.834752!10818-111B8;0.399462!10819-111B9;0.713345!10820-111C1;0.787362!10484-107A7;0.728987!10808-111A7;0.803671!10169-103B7;0.593979!10153-102I9;0.187654!13425-144D5;0.310281!13433-144E4;0.0207735!13437-144E8;0.0356235!11904-125F5;0.0274364!11905-125F6;0.0434535!10039-101F3;0.0853454!10791-110H8;0.150987!10017-101C8;0.705321!10045-101F9;0.287051!10509-107D5;0.420662!10839-111E2;0.50711!10692-109F8;0.155647!10079-102A7;0.972198!10078-102A6;0.691163!10721-110A1;0.45463!10569-108B2;0.881657!10570-108B3;0.870821!10571-108B4;0.956828!10647-109A8;0.896246!10752-110D5;0.443784!10782-110G8;0.707898!10726-110A6;0.785705!10018-101C9;0.908272!10086-102B5;0.0228354!10182-103D2;0.227361!10165-103B3;0.162836!10499-107C4;0.256604!10408-106B3;0.987641!10019-101D1;0.814107!10068-101I5;0.298489!10075-102A3;0.311719!10077-102A5;0.459886!10727-110A7;0.0221944!10775-110G1;0.979349!10412-106B7;0.936527!12231-129F8;0.537873!12232-129F9;0.250899!12233-129G1;0.177436!12234-129G2;0.061984!10414-106B9;0.215913!10170-103B8;0.51061!10183-103D3;0.0802667!10150-102I6;0.123674!10174-103C3;0.197431!10155-103A2;0.247804!10038-101F2;0.40663!10838-111E1;0.264784!10759-110E3;0.160439!10514-107E1;0.530417!10465-106H6;0.854072!10691-109F7;0.452438!10843-111E6;0.73336!10844-111E7;0.665891!11747-123G1;0.243069!11748-123G2;0.916301!11749-123G3;0.860546!11750-123G4;0.948492!11751-123G5;0.324526!11840-124H4;0.639074!11752-123G6;0.66869!11753-123G7;0.913949!11754-123G8;0.734639!11755-123G9;0.801277!11756-123H1;0.756962!11833-124G6;0.714769!11760-123H5;0.52194!11836-124G9;0.937067!11758-123H3;0.568531!11835-124G8;0.90461!11762-123H7;0.900297!11838-124H2;0.426528!11757-123H2;0.640823!11759-123H4;0.611056!11761-123H6;0.492426!11842-124H6;0.703067!11837-124H1;0.770565!10568-108B1;0.609697!13230-141I8;0.0431813!13231-141I9;0.923599!10696-109G3;0.964054!10493-107B7;0.687548!10494-107B8;0.622487!10850-111F4;0.162668!10851-111F5;0.875959!10852-111F6;0.745288!10853-111F7;0.565047!10854-111F8;0.444548!10855-111F9;0.523272!10856-111G1;0.27055!10847-111F1;0.389695!10846-111E9;0.830474!10848-111F2;0.366905!10845-111E8;0.953811!10857-111G2;0.623272!10858-111G3;0.438449!10156-103A3;0.482306!11901-125F2;0.183641!11902-125F3;0.360559!11903-125F4;0.401185!10689-109F5;0.271195!10648-109A9;0.792612!10784-110H1;0.0317008!10744-110C6;0.804516!10772-110F7;0.4945!10474-106I6;0.79548!10600-108E6;0.717229!10684-109E9;0.539449!12226-129F3;0.81237!12227-129F4;0.94209!10508-107D4;0.82741!10539-107G8;0.0727111!10607-108F4;0.0440938!10555-107I6;0.355562!10774-110F9;0.0586316!10637-108I7;0.15371!10663-109C6;0.578869!10728-110A8;0.57126!10729-110A9;0.322719!10430-106D7;0.991612!10730-110B1;0.548062!10813-111B3;0.397614!10812-111B2;0.939267!10037-101F1;0.592258!10172-103C1;0.165261!10163-103B1;0.0926081!10076-102A4;0.208414!10073-102A1;0.104552!10036-101E9;0.279736!10195-103E6;0.144329!10277-104E7;0.178065!10434-106E2;0.489645!10550-107I1;0.932121!10545-107H5;0.756646!10544-107H4;0.36661!10704-109H2;0.787222!10510-107D6;0.589474!10558-107I9;0.964541!10020-101D2;0.984705!10732-110B3;0.270186!10049-101G4;0.849829!10698-109G5;0.386443!10437-106E5;0.617482!10417-106C3;0.650558!10035-101E8;0.379198!10171-103B9;0.117856!10157-103A4;0.106119!10034-101E7;0.165041!10072-101I9;0.13756!10199-103F1;0.186824!10200-103F2;0.356205!10697-109G4;0.372212!10723-110A3;0.975963!10179-103C8;0.900492!10160-103A7;0.358876!10180-103C9;0.328006!10162-103A9;0.802081!10021-101D3;0.687605!10840-111E3;0.045502!10706-109H4;0.957629!10033-101E6;0.352763!10032-101E5;0.103031!10490-107B4;0.131424!10439-106E7;0.776898!10022-101D4;0.911643!10176-103C5;0.399287!10469-106I1;0.137766!10067-101I4;0.530124!10411-106B6;0.66207!10471-106I3;0.751737!10030-101E3;0.573598!10475-106I7;0.568762!10787-110H4;0.571845!10477-106I9;0.593741!10695-109G2;0.25593!11771-123I7;0.599124!11772-123I8;0.505494!11773-123I9;0.833631!10093-102C3;0.164105!10442-106F1;0.524971!10442-106F1;0.952753!10201-103F3;0.768188!10639-108I9;0.413709!11843-124H7;0.590875!11841-124H5;0.519322!10693-109F9;0.709212!10436-106E4;0.583527!10483-107A6;0.594602!10282-104F3;0.737475!10023-101D5;0.219796!10066-101I3;0.297708!10065-101I2;0.607074!10800-110I8;0.504253!10610-108F7;0.852238!10841-111E4;0.0963413!10541-107H1;0.760592!10842-111E5;0.572188!10562-108A4;0.10457!10024-101D6;0.460493!10064-101I1;0.344315!10609-108F6;0.482795!10048-101G3;0.604158!10781-110G7;0.457487!10181-103D1;0.77175!10159-103A6;0.269923!10056-101H2;0.563425!10737-110B8;0.422472!10025-101D7;0.87555!10044-101F8;0.063128!10424-106D1;0.123926!10463-106H4;0.91067!10616-108G4;0.876726!10486-107A9;0.972686!10062-101H8;0.599813!10202-103F4;0.405522!10158-103A5;0.472699!10441-106E9;0.476556!10031-101E4;0.194565!10063-101H9;0.181404!10063-101H9;0.314153!11763-123H8;0.719484!11765-123I1;0.691331!11768-123I4;0.740034!10807-111A6;0.407062!10790-110H7;0.0574717!10798-110I6;0.048205!10786-110H3;0.0684482!10591-108D6;0.0216476!10593-108D8;0.169115!10590-108D5;0.0528273!10026-101D8;0.25664!10096-102C6;0.0457024!10168-103B6;0.309956!10154-103A1;0.133516!10209-103G2;0.264313!10061-101H7;0.388874!10027-101D9;0.681719!10043-101F7;0.341636!10783-110G9;0.151387!10028-101E1;0.199574!10060-101H6;0.44847!10203-103F5;0.565282!10059-101H5;0.381409!10047-101G2;0.597492!10029-101E2;0.0932797!10058-101H4;0.223514!10418-106C4;0.509386!10492-107B6;0.813767!10694-109G1;0.857124!10797-110I5;0.355274!10057-101H3;0.697261!10100-102D1;0.535624!10055-101H1;0.583844!10204-103F6;0.693375!10191-103E2;0.228329!10563-108A5;0.257251
|name=TTGCAGCGTA,motif613,CNhs12840,T:1456.0(40.64%),B:20964.4(31.49%),P:1e-30
|name=TTGCAGCGTA,motif613,CNhs12840,T:1456.0(40.64%),B:20964.4(31.49%),P:1e-30
|tomtom_result=Pax5#MA0014.1;6;0.00275456;1.31117;1;10;TTGCAGCGTA;GGAGCACTGAAGCGTAACCG;+!STP1#MA0394.1;-1;0.0122537;5.83276;1;8;TTGCAGCGTA;TGCGGCGC;+!PHD1#MA0355.1;2;0.0137113;6.5266;1;8;TTGCAGCGTA;TGCTGCAGGT;-!FOXC1#MA0032.1;-2;0.0177616;8.45451;1;8;TTGCAGCGTA;GGTAAGTA;+!Pax6#MA0069.1;2;0.0189316;9.01144;1;10;TTGCAGCGTA;AACTCATGCGTGAA;-
}}
}}

Latest revision as of 13:32, 7 September 2012

Full Name: TTGCAGCGTA,motif613,CNhs12840,T:1456.0(40.64%),B:20964.4(31.49%),P:1e-30

Motif matrix
POACGT
1174.72189.28129.584962.416
2131.04116.48133.9521074.528
3141.232139.7761055.6119.392
4123.761055.6135.408141.232
51045.408126.672129.584154.336
6116.48129.5841096.368113.568
7171.8081001.728133.952148.512
8139.776160.16969.696186.368
9182151.424198.016924.56
101007.552160.16136.864151.424

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax5#MA0014.160.002754561.31117110TTGCAGCGTAGGAGCACTGAAGCGTAACCG+
STP1#MA0394.1-10.01225375.8327618TTGCAGCGTATGCGGCGC+
PHD1#MA0355.120.01371136.526618TTGCAGCGTATGCTGCAGGT-
FOXC1#MA0032.1-20.01776168.4545118TTGCAGCGTAGGTAAGTA+
Pax6#MA0069.120.01893169.01144110TTGCAGCGTAAACTCATGCGTGAA-
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