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MacroAPE 1083:TGCAGCATTA,motif668: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;34.276;17.138;11.275;388.311!2;40.59;18.04;369.82;22.55!3;15.785;402.743;8.569;23.903!4;363.957;33.825;23.903;29.315!5;13.981;30.217;377.036...")
 
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4!10464-106H5;0.35942!10827-111C8;0.750544!10789-110H6;0.429626!10828-111C9;0.0876167!10788-110H5;0.718086!10792-110H9;0.00989676!10765-110E9;0.26546!10829-111D1;0.193533!10830-111D2;0.870573!10831-111D3;0.0626836!10832-111D4;0.129882!10833-111D5;0.390088!10764-110E8;0.474599!10770-110F5;0.048405!10399-106A3;0.691826!10400-106A4;0.117762!10405-106A9;0.0766324!10834-111D6;0.0588761!10835-111D7;0.705058!10836-111D8;0.465082!10837-111D9;0.211463!10699-109G6;0.393643!10802-111A1;0.0768502!10796-110I4;0.181664!10010-101C1;0.102778!10810-111A9;0.71722!10421-106C7;0.904309!10708-109H6;0.709491!12235-129G3;0.987624!12236-129G4;0.218308!12237-129G5;0.43547!10167-103B5;0.553752!10151-102I7;0.000372518!10428-106D5;0.00181451!10795-110I3;0.707267!10805-111A4;0.210491!10052-101G7;0.747945!10189-103D9;0.861321!10589-108D4;0.685722!10425-106D2;0.694004!10427-106D4;0.0594802!10702-109G9;0.0525612!10432-106D9;0.732763!10496-107C1;0.590077!10718-109I7;0.518794!10011-101C2;0.169557!10053-101G8;0.943859!10686-109F2;0.0920272!10084-102B3;0.70265!10012-101C3;0.000282489!10085-102B4;0.000598385!10482-107A5;0.00509867!10419-106C5;0.304848!10080-102A8;0.0700386!10760-110E4;0.450848!10709-109H7;0.557816!10710-109H8;0.326229!10703-109H1;0.0839632!10719-109I8;0.0162001!10642-109A3;0.40959!10177-103C6;0.0752222!10164-103B2;0.00128977!10173-103C2;0.000827751!10166-103B4;0.000492847!10083-102B2;0.000632202!10188-103D8;0.000227434!10552-107I3;0.000921816!10553-107I4;0.237585!10013-101C4;0.142134!10536-107G5;0.661494!10618-108G6;0.908822!10423-106C9;0.102177!10785-110H2;0.0124443!12238-129G6;0.000455831!12239-129G7;0.0520889!12240-129G8;0.1626!10416-106C2;0.0371687!10801-110I9;0.952807!10766-110F1;0.190664!10824-111C5;0.144094!10825-111C6;0.51122!10826-111C7;0.451423!10454-106G4;0.469068!10409-106B4;0.768927!10638-108I8;0.0822988!10636-108I6;0.145089!10513-107D9;0.105516!10420-106C6;0.0136654!10082-102B1;0.930446!10014-101C5;0.942716!10070-101I7;0.702367!10452-106G2;0.948014!10453-106G3;0.298648!10449-106F8;0.768237!10042-101F6;0.885439!10069-101I6;0.0102279!10193-103E4;0.868927!10631-108I1;0.000315841!10438-106E6;0.508681!10488-107B2;0.232278!10196-103E7;0.719218!10071-101I8;0.45853!10071-101I8;0.389717!10041-101F5;0.0110775!10451-106G1;0.49744!10450-106F9;0.0650169!10604-108F1;0.162568!10605-108F2;0.859638!10606-108F3;0.632693!10603-108E9;0.984592!10497-107C2;0.781098!10448-106F7;0.0115683!10643-109A4;0.406794!10426-106D3;0.182177!10431-106D8;0.219523!10197-103E8;0.142215!10443-106F2;0.698534!10815-111B5;0.95361!10816-111B6;0.158503!10817-111B7;0.0949204!10015-101C6;0.172229!10410-106B5;0.86931!10054-101G9;0.381104!10758-110E2;0.0561433!10711-109H9;0.657077!10040-101F4;0.509508!10470-106I2;0.000623399!10415-106C1;0.0274515!10198-103E9;0.685767!10614-108G2;0.822056!10612-108F9;0.352354!10549-107H9;0.0350272!10615-108G3;0.54324!10487-107B1;0.449525!10433-106E1;0.263955!10688-109F4;0.604633!10444-106F3;0.0964008!10444-106F3;0.120465!10485-107A8;0.0773018!10413-106B8;0.733287!10175-103C4;0.511412!10161-103A8;0.00137413!12131-128D7;0.010848!10624-108H3;0.00967096!10712-109I1;0.733012!10205-103F7;0.326702!10206-103F8;0.45993!10207-103F9;0.547898!10050-101G5;0.33717!10051-101G6;0.354838!10016-101C7;0.77293!10046-101G1;0.718321!10778-110G4;0.94872!10633-108I3;0.795553!10818-111B8;0.0124209!10819-111B9;0.19798!10820-111C1;0.230997!10484-107A7;0.21988!10808-111A7;0.142273!10169-103B7;0.858015!10153-102I9;0.00226999!13425-144D5;0.00376651!13433-144E4;0.689172!13437-144E8;0.46479!11904-125F5;0.622467!11905-125F6;0.00621382!10039-101F3;0.00912308!10791-110H8;0.000575122!10017-101C8;0.274358!10045-101F9;0.431706!10509-107D5;0.48061!10839-111E2;0.403781!10692-109F8;0.535919!10079-102A7;0.398211!10078-102A6;0.795155!10721-110A1;0.745891!10569-108B2;0.683805!10570-108B3;0.204929!10571-108B4;0.170925!10647-109A8;0.242953!10752-110D5;0.65749!10782-110G8;0.133522!10726-110A6;0.79527!10018-101C9;0.679024!10086-102B5;0.0193131!10182-103D2;0.0100875!10165-103B3;0.000231744!10499-107C4;0.000510224!10408-106B3;0.730896!10019-101D1;0.698049!10068-101I5;0.156106!10075-102A3;0.130676!10077-102A5;0.164675!10727-110A7;0.53395!10775-110G1;0.027434!10412-106B7;0.383842!12231-129F8;0.769643!12232-129F9;0.0571683!12233-129G1;0.362922!12234-129G2;0.0988415!10414-106B9;0.0384723!10170-103B8;0.656587!10183-103D3;0.000563748!10150-102I6;0.000488782!10174-103C3;0.00100429!10155-103A2;0.00227641!10038-101F2;0.0033504!10838-111E1;0.000864619!10759-110E3;0.408968!10514-107E1;0.967405!10465-106H6;0.165988!10691-109F7;0.300857!10843-111E6;0.745153!10844-111E7;0.544709!11747-123G1;0.0653302!11748-123G2;0.492835!11749-123G3;0.445536!11750-123G4;0.783405!11751-123G5;0.748956!11840-124H4;0.901279!11752-123G6;0.811893!11753-123G7;0.592955!11754-123G8;0.741996!11755-123G9;0.511725!11756-123H1;0.453169!11833-124G6;0.829762!11760-123H5;0.721244!11836-124G9;0.637242!11758-123H3;0.664691!11835-124G8;0.956134!11762-123H7;0.812609!11838-124H2;0.631221!11757-123H2;0.987063!11759-123H4;0.67684!11761-123H6;0.139644!11842-124H6;0.717538!11837-124H1;0.766656!10568-108B1;0.592011!13230-141I8;0.352493!13231-141I9;0.44856!10696-109G3;0.662796!10493-107B7;0.983025!10494-107B8;0.727431!10850-111F4;0.195727!10851-111F5;0.511999!10852-111F6;0.17128!10853-111F7;0.919118!10854-111F8;0.278918!10855-111F9;0.63569!10856-111G1;0.692047!10847-111F1;0.282615!10846-111E9;0.372886!10848-111F2;0.632829!10845-111E8;0.578807!10857-111G2;0.856709!10858-111G3;0.383264!10156-103A3;0.579078!11901-125F2;0.001926!11902-125F3;0.0142719!11903-125F4;0.131136!10689-109F5;0.0836466!10648-109A9;0.0238766!10784-110H1;0.790511!10744-110C6;0.192282!10772-110F7;0.490745!10474-106I6;0.275339!10600-108E6;0.123199!10684-109E9;0.593096!12226-129F3;0.369595!12227-129F4;0.428552!10508-107D4;0.642326!10539-107G8;0.0243303!10607-108F4;0.0108945!10555-107I6;0.459346!10774-110F9;0.0407501!10637-108I7;0.768152!10663-109C6;0.981699!10728-110A8;0.73692!10729-110A9;0.82768!10430-106D7;0.757687!10730-110B1;0.365551!10813-111B3;0.0187855!10812-111B2;0.800717!10037-101F1;0.714609!10172-103C1;0.000857706!10163-103B1;0.000451303!10076-102A4;0.00244796!10073-102A1;0.000565114!10036-101E9;0.0073215!10195-103E6;0.000293377!10277-104E7;0.0008931!10434-106E2;0.0255183!10550-107I1;0.0818341!10545-107H5;0.351661!10544-107H4;0.475267!10704-109H2;0.18635!10510-107D6;0.760025!10558-107I9;0.891035!10020-101D2;0.11197!10732-110B3;0.785646!10049-101G4;0.222568!10698-109G5;0.335963!10437-106E5;0.00496171!10417-106C3;0.984883!10035-101E8;0.148644!10171-103B9;0.000305596!10157-103A4;0.000529355!10034-101E7;0.00106954!10072-101I9;0.000345259!10199-103F1;0.0106596!10200-103F2;0.166084!10697-109G4;0.99032!10723-110A3;0.65161!10179-103C8;0.12905!10160-103A7;0.00229736!10180-103C9;0.00458416!10162-103A9;0.00967375!10021-101D3;0.00957617!10840-111E3;0.0678086!10706-109H4;0.441008!10033-101E6;0.186391!10032-101E5;7.47408e-05!10490-107B4;0.000282314!10439-106E7;0.530375!10022-101D4;0.362297!10176-103C5;0.785298!10469-106I1;0.000882481!10067-101I4;0.112807!10411-106B6;0.205866!10471-106I3;0.232548!10030-101E3;0.012849!10475-106I7;0.0391914!10787-110H4;0.724876!10477-106I9;0.730485!10695-109G2;0.532305!11771-123I7;0.927395!11772-123I8;0.42534!11773-123I9;0.418154!10093-102C3;0.178967!10442-106F1;0.13636!10442-106F1;0.58552!10201-103F3;0.863644!10639-108I9;0.560528!11843-124H7;0.299908!11841-124H5;0.722193!10693-109F9;0.649772!10436-106E4;0.0881789!10483-107A6;0.0948216!10282-104F3;0.12865!10023-101D5;0.384718!10066-101I3;0.337364!10065-101I2;0.947288!10800-110I8;0.939056!10610-108F7;0.452638!10841-111E4;0.247133!10541-107H1;0.546648!10842-111E5;0.856059!10562-108A4;0.0168291!10024-101D6;0.774621!10064-101I1;0.498336!10609-108F6;0.95891!10048-101G3;0.374082!10781-110G7;0.791459!10181-103D1;0.040393!10159-103A6;0.00236587!10056-101H2;0.0084102!10737-110B8;0.00383291!10025-101D7;0.940275!10044-101F8;0.319604!10424-106D1;0.315567!10463-106H4;0.0517684!10616-108G4;0.222024!10486-107A9;0.38606!10062-101H8;0.228934!10202-103F4;0.379846!10158-103A5;0.405243!10441-106E9;0.017765!10031-101E4;0.677158!10063-101H9;0.000404276!10063-101H9;0.0101885!11763-123H8;0.323604!11765-123I1;0.902304!11768-123I4;0.737988!10807-111A6;0.928932!10790-110H7;0.876248!10798-110I6;0.111881!10786-110H3;0.090387!10591-108D6;0.848552!10593-108D8;0.522994!10590-108D5;0.699844!10026-101D8;0.0628439!10096-102C6;0.245817!10168-103B6;0.370855!10154-103A1;0.00182522!10209-103G2;0.00736132!10061-101H7;0.700617!10027-101D9;0.737106!10043-101F7;0.212294!10783-110G9;0.143666!10028-101E1;0.973287!10060-101H6;0.444132!10203-103F5;0.201453!10059-101H5;0.783909!10047-101G2;0.660393!10029-101E2;0.295465!10058-101H4;0.249058!10418-106C4;0.814032!10492-107B6;0.334654!10694-109G1;0.0728192!10797-110I5;0.618511!10057-101H3;0.290497!10100-102D1;0.48909!10055-101H1;0.906446!10204-103F6;0.716762!10191-103E2;0.774822!10563-108A5;0.688823
|name=TGCAGCATTA,motif668,CNhs10638,T:451.0(13.14%),B:4786.0(7.53%),P:1e-29
|name=TGCAGCATTA,motif668,CNhs10638,T:451.0(13.14%),B:4786.0(7.53%),P:1e-29
|tomtom_result=PHD1#MA0355.1;3;0.0109906;5.23154;0.999999;7;TGCAGCATTA;ACCTGCAGCA;+!mab-3#MA0262.1;4;0.0164699;7.83969;0.999999;9;TGCAGCATTA;AATTCGCAACATT;-
}}
}}

Latest revision as of 13:34, 7 September 2012

Full Name: TGCAGCATTA,motif668,CNhs10638,T:451.0(13.14%),B:4786.0(7.53%),P:1e-29

Motif matrix
POACGT
134.27617.13811.275388.311
240.5918.04369.8222.55
315.785402.7438.56923.903
4363.95733.82523.90329.315
513.98130.217377.03629.766
650.512362.15319.39318.942
7360.34938.33522.09930.217
844.19869.90523.452313.445
963.1427.0636.982323.818
10347.72147.80616.68738.786

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
PHD1#MA0355.130.01099065.231540.9999997TGCAGCATTAACCTGCAGCA+
mab-3#MA0262.140.01646997.839690.9999999TGCAGCATTAAATTCGCAACATT-
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