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MacroAPE 1083:14-TACGCCC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;263.79;60.574;1.954;1627.682!2;1948.138;1.954;1.954;1.954!3;1.954;1948.138;1.954;1.954!4;308.732;1.954;1641.36;1.954!5;1.954;1948.138;1.954;...")
 
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3!10789-110H6;0.143142!10828-111C9;0.638819!10788-110H5;0.551076!10792-110H9;0.435209!10765-110E9;0.158416!10829-111D1;0.351213!10830-111D2;0.206657!10831-111D3;0.235034!10832-111D4;0.359078!10833-111D5;0.305417!10764-110E8;0.227342!10770-110F5;0.654337!10399-106A3;0.435767!10400-106A4;0.268406!10405-106A9;0.370851!10834-111D6;0.314761!10835-111D7;0.18535!10836-111D8;0.84599!10837-111D9;0.768685!10699-109G6;0.377545!10802-111A1;0.139105!10796-110I4;0.574158!10010-101C1;0.541599!10810-111A9;0.734721!10421-106C7;0.294057!10708-109H6;0.818784!12235-129G3;0.228504!12236-129G4;0.00909618!12237-129G5;0.990609!10167-103B5;0.0374006!10151-102I7;0.905496!10428-106D5;0.823488!10795-110I3;0.294983!10805-111A4;0.494808!10052-101G7;0.654235!10189-103D9;0.533219!10589-108D4;0.564188!10425-106D2;0.994303!10427-106D4;0.506403!10702-109G9;0.910256!10432-106D9;0.576708!10496-107C1;0.826898!10718-109I7;0.690357!10011-101C2;0.31661!10053-101G8;0.749596!10686-109F2;0.309562!10084-102B3;0.511634!10012-101C3;0.868864!10085-102B4;0.804261!10482-107A5;0.9893!10419-106C5;0.705865!10080-102A8;0.875036!10760-110E4;0.411226!10709-109H7;0.888911!10710-109H8;0.952876!10703-109H1;0.644194!10719-109I8;0.207013!10642-109A3;0.461219!10177-103C6;0.239579!10164-103B2;0.590903!10173-103C2;0.751236!10166-103B4;0.348009!10083-102B2;0.500447!10188-103D8;0.445599!10552-107I3;0.831109!10553-107I4;0.291781!10013-101C4;0.343472!10536-107G5;0.797184!10618-108G6;0.803822!10423-106C9;0.417823!10785-110H2;0.768355!12238-129G6;0.324446!12239-129G7;0.0108761!12240-129G8;0.296902!10416-106C2;0.0196487!10801-110I9;0.966066!10766-110F1;0.114282!10824-111C5;0.323013!10825-111C6;0.654885!10826-111C7;0.684887!10454-106G4;0.660052!10409-106B4;0.437474!10638-108I8;0.421713!10636-108I6;0.783698!10513-107D9;0.786649!10420-106C6;0.888892!10082-102B1;0.617879!10014-101C5;0.441779!10070-101I7;0.62635!10452-106G2;0.539689!10453-106G3;0.496675!10449-106F8;0.357251!10042-101F6;0.374885!10069-101I6;0.75216!10193-103E4;0.991515!10631-108I1;0.666271!10438-106E6;0.688177!10488-107B2;0.470118!10196-103E7;0.216918!10071-101I8;0.722133!10071-101I8;0.602143!10041-101F5;0.548269!10451-106G1;0.596405!10450-106F9;0.743752!10604-108F1;0.81709!10605-108F2;0.36194!10606-108F3;0.491258!10603-108E9;0.406476!10497-107C2;0.314955!10448-106F7;0.81999!10643-109A4;0.384914!10426-106D3;0.0187497!10431-106D8;0.632596!10197-103E8;0.981331!10443-106F2;0.879237!10815-111B5;0.487946!10816-111B6;0.4369!10817-111B7;0.435082!10015-101C6;0.479777!10410-106B5;0.484919!10054-101G9;0.288492!10758-110E2;0.8986!10711-109H9;0.0289823!10040-101F4;0.251329!10470-106I2;0.73785!10415-106C1;0.836123!10198-103E9;0.412309!10614-108G2;0.525174!10612-108F9;0.691467!10549-107H9;0.868389!10615-108G3;0.1787!10487-107B1;0.681222!10433-106E1;0.72636!10688-109F4;0.144516!10444-106F3;0.577249!10444-106F3;0.558312!10485-107A8;0.397834!10413-106B8;0.274265!10175-103C4;0.164242!10161-103A8;0.876307!12131-128D7;0.74874!10624-108H3;0.529653!10712-109I1;0.297577!10205-103F7;0.682018!10206-103F8;0.804222!10207-103F9;0.863599!10050-101G5;0.720371!10051-101G6;0.804576!10016-101C7;0.936857!10046-101G1;0.766059!10778-110G4;0.808297!10633-108I3;0.87076!10818-111B8;0.895829!10819-111B9;0.732129!10820-111C1;0.724718!10484-107A7;0.774764!10808-111A7;0.589244!10169-103B7;0.879086!10153-102I9;0.622175!13425-144D5;0.732376!13433-144E4;0.354977!13437-144E8;0.429858!11904-125F5;0.821994!11905-125F6;0.0742925!10039-101F3;0.0486417!10791-110H8;0.797719!10017-101C8;0.677522!10045-101F9;0.300474!10509-107D5;0.316464!10839-111E2;0.570746!10692-109F8;0.707308!10079-102A7;0.848756!10078-102A6;0.752453!10721-110A1;0.850065!10569-108B2;0.262999!10570-108B3;0.294091!10571-108B4;0.693125!10647-109A8;0.0362704!10752-110D5;0.0310139!10782-110G8;0.245926!10726-110A6;0.0241503!10018-101C9;0.507208!10086-102B5;0.627252!10182-103D2;0.465283!10165-103B3;0.673409!10499-107C4;0.710818!10408-106B3;0.28979!10019-101D1;0.561303!10068-101I5;0.363283!10075-102A3;0.398797!10077-102A5;0.42927!10727-110A7;0.361487!10775-110G1;0.316813!10412-106B7;0.827524!12231-129F8;0.958924!12232-129F9;0.525625!12233-129G1;0.609005!12234-129G2;0.463039!10414-106B9;0.689413!10170-103B8;0.861671!10183-103D3;0.533438!10150-102I6;0.554664!10174-103C3;0.593772!10155-103A2;0.708109!10038-101F2;0.735352!10838-111E1;0.851881!10759-110E3;0.167318!10514-107E1;0.654398!10465-106H6;0.84089!10691-109F7;0.370985!10843-111E6;0.467977!10844-111E7;0.288609!11747-123G1;0.309523!11748-123G2;0.497536!11749-123G3;0.598571!11750-123G4;0.76107!11751-123G5;0.849863!11840-124H4;0.901423!11752-123G6;0.815173!11753-123G7;0.533423!11754-123G8;0.463479!11755-123G9;0.258989!11756-123H1;0.33208!11833-124G6;0.466381!11760-123H5;0.657587!11836-124G9;0.543807!11758-123H3;0.628853!11835-124G8;0.635172!11762-123H7;0.827471!11838-124H2;0.890408!11757-123H2;0.836286!11759-123H4;0.75385!11761-123H6;0.343056!11842-124H6;0.684686!11837-124H1;0.563848!10568-108B1;0.81739!13230-141I8;0.0326601!13231-141I9;0.704261!10696-109G3;0.728692!10493-107B7;0.192879!10494-107B8;0.752453!10850-111F4;0.0597094!10851-111F5;0.270111!10852-111F6;0.108076!10853-111F7;0.0660115!10854-111F8;0.238454!10855-111F9;0.124448!10856-111G1;0.862969!10847-111F1;0.0752998!10846-111E9;0.524143!10848-111F2;0.0479543!10845-111E8;0.170593!10857-111G2;0.49504!10858-111G3;0.765013!10156-103A3;0.121339!11901-125F2;0.594403!11902-125F3;0.113827!11903-125F4;0.249989!10689-109F5;0.366448!10648-109A9;0.486555!10784-110H1;0.783735!10744-110C6;0.677591!10772-110F7;0.945975!10474-106I6;0.163471!10600-108E6;0.50132!10684-109E9;0.789112!12226-129F3;0.0994889!12227-129F4;0.173807!10508-107D4;0.554356!10539-107G8;0.134328!10607-108F4;0.271132!10555-107I6;0.238269!10774-110F9;0.171493!10637-108I7;0.349709!10663-109C6;0.295564!10728-110A8;0.452892!10729-110A9;0.322169!10430-106D7;0.591871!10730-110B1;0.808068!10813-111B3;0.554304!10812-111B2;0.89542!10037-101F1;0.987087!10172-103C1;0.812759!10163-103B1;0.48945!10076-102A4;0.62569!10073-102A1;0.654807!10036-101E9;0.59673!10195-103E6;0.751883!10277-104E7;0.68245!10434-106E2;0.677609!10550-107I1;0.780385!10545-107H5;0.839277!10544-107H4;0.596672!10704-109H2;0.384064!10510-107D6;0.9701!10558-107I9;0.68878!10020-101D2;0.715803!10732-110B3;0.88705!10049-101G4;0.455002!10698-109G5;0.625706!10437-106E5;0.67514!10417-106C3;0.953116!10035-101E8;0.393475!10171-103B9;0.759032!10157-103A4;0.474195!10034-101E7;0.568251!10072-101I9;0.793082!10199-103F1;0.590604!10200-103F2;0.305107!10697-109G4;0.906045!10723-110A3;0.17034!10179-103C8;0.484583!10160-103A7;0.316738!10180-103C9;0.353461!10162-103A9;0.967562!10021-101D3;0.971663!10840-111E3;0.298847!10706-109H4;0.664273!10033-101E6;0.356934!10032-101E5;0.662865!10490-107B4;0.741655!10439-106E7;0.925744!10022-101D4;0.706931!10176-103C5;0.711808!10469-106I1;0.596523!10067-101I4;0.48466!10411-106B6;0.856952!10471-106I3;0.526587!10030-101E3;0.844276!10475-106I7;0.919578!10787-110H4;0.460691!10477-106I9;0.147126!10695-109G2;0.242772!11771-123I7;0.848216!11772-123I8;0.369547!11773-123I9;0.0759948!10093-102C3;0.031177!10442-106F1;0.338833!10442-106F1;0.190199!10201-103F3;0.153173!10639-108I9;0.995815!11843-124H7;0.354985!11841-124H5;0.631288!10693-109F9;0.700013!10436-106E4;0.287813!10483-107A6;0.553858!10282-104F3;0.700771!10023-101D5;0.22791!10066-101I3;0.475372!10065-101I2;0.935331!10800-110I8;0.9994!10610-108F7;0.847515!10841-111E4;0.502547!10541-107H1;0.243732!10842-111E5;0.518743!10562-108A4;0.329167!10024-101D6;0.8856!10064-101I1;0.493369!10609-108F6;0.789039!10048-101G3;0.373705!10781-110G7;0.948316!10181-103D1;0.966112!10159-103A6;0.832558!10056-101H2;0.781373!10737-110B8;0.916495!10025-101D7;0.844841!10044-101F8;0.43285!10424-106D1;0.432597!10463-106H4;0.808915!10616-108G4;0.500604!10486-107A9;0.63572!10062-101H8;0.957572!10202-103F4;0.554056!10158-103A5;0.611359!10441-106E9;0.762836!10031-101E4;0.618689!10063-101H9;0.818413!10063-101H9;0.619647!11763-123H8;0.998858!11765-123I1;0.648385!11768-123I4;0.617304!10807-111A6;0.955349!10790-110H7;0.762915!10798-110I6;0.954195!10786-110H3;0.48738!10591-108D6;0.3997!10593-108D8;0.876168!10590-108D5;0.719521!10026-101D8;0.480215!10096-102C6;0.381795!10168-103B6;0.404496!10154-103A1;0.638874!10209-103G2;0.602054!10061-101H7;0.918616!10027-101D9;0.845593!10043-101F7;0.519723!10783-110G9;0.198229!10028-101E1;0.771379!10060-101H6;0.539242!10203-103F5;0.682755!10059-101H5;0.751429!10047-101G2;0.880816!10029-101E2;0.331196!10058-101H4;0.477126!10418-106C4;0.5955!10492-107B6;0.783101!10694-109G1;0.34363!10797-110I5;0.159802!10057-101H3;0.323457!10100-102D1;0.920796!10055-101H1;0.734708!10204-103F6;0.808129!10191-103E2;0.741787!10563-108A5;0.623352
|name=14-TACGCCC,CNhs13471,BestGuess:EGR3_f1_HM09(0.728073178641985),T:1954.0(24.82%),B:7818.6(19.01%),P:1e-36
|name=14-TACGCCC,CNhs13471,BestGuess:EGR3_f1_HM09(0.728073178641985),T:1954.0(24.82%),B:7818.6(19.01%),P:1e-36
|tomtom_result=btd#MA0443.1;0;0.000448038;0.213266;0.426533;7;TACGCCC;TCCGCCCCCT;-!hkb#MA0450.1;1;0.00135519;0.645072;0.645072;7;TACGCCC;TCACGCCCC;-!Egr1#MA0162.1;-1;0.00273313;1.30097;0.867314;6;TACGCCC;CCGCCCACGCA;-!AFT2#MA0270.1;0;0.00540005;2.57042;1;7;TACGCCC;CACACCCC;+!Klf4#MA0039.2;2;0.00783717;3.73049;1;7;TACGCCC;GCCCCACCCA;-!MIZF#MA0131.1;1;0.00814796;3.87843;1;7;TACGCCC;TAACGTCCGC;+!CRZ1#MA0285.1;1;0.0099871;4.75386;1;7;TACGCCC;CTAAGCCAC;+!STB5#MA0392.1;0;0.0190342;9.06026;1;7;TACGCCC;TAACACCG;-
}}
}}

Latest revision as of 13:36, 7 September 2012

Full Name: 14-TACGCCC,CNhs13471,BestGuess:EGR3_f1_HM09(0.728073178641985),T:1954.0(24.82%),B:7818.6(19.01%),P:1e-36

Motif matrix
POACGT
1263.7960.5741.9541627.682
21948.1381.9541.9541.954
31.9541948.1381.9541.954
4308.7321.9541641.361.954
51.9541948.1381.9541.954
61.9541948.1381.9541.954
71.9541948.1381.9541.954

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
btd#MA0443.100.0004480380.2132660.4265337TACGCCCTCCGCCCCCT-
hkb#MA0450.110.001355190.6450720.6450727TACGCCCTCACGCCCC-
Egr1#MA0162.1-10.002733131.300970.8673146TACGCCCCCGCCCACGCA-
AFT2#MA0270.100.005400052.5704217TACGCCCCACACCCC+
Klf4#MA0039.220.007837173.7304917TACGCCCGCCCCACCCA-
MIZF#MA0131.110.008147963.8784317TACGCCCTAACGTCCGC+
CRZ1#MA0285.110.00998714.7538617TACGCCCCTAAGCCAC+
STB5#MA0392.100.01903429.0602617TACGCCCTAACACCG-
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