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MacroAPE 1083:10-GTTTCTACG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;67.45;64.61;504.1;73.84!2;24.14;10.65;94.43;580.78!3;39.05;34.08;26.98;609.89!4;85.91;49.7;73.84;500.55!5;61.77;524.69;97.27;26.27!6;37.63;3...")
 
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9465!10792-110H9;0.394073!10765-110E9;0.41446!10829-111D1;0.414743!10830-111D2;0.702078!10831-111D3;0.8124!10832-111D4;0.293105!10833-111D5;0.707541!10764-110E8;0.917057!10770-110F5;0.537972!10399-106A3;0.537459!10400-106A4;0.421748!10405-106A9;0.39607!10834-111D6;0.997432!10835-111D7;0.261113!10836-111D8;0.866791!10837-111D9;0.858907!10699-109G6;0.317128!10802-111A1;0.215438!10796-110I4;0.414731!10010-101C1;0.358636!10810-111A9;0.830961!10421-106C7;0.594605!10708-109H6;0.364502!12235-129G3;0.687845!12236-129G4;0.000173787!12237-129G5;0.043226!10167-103B5;8.81284e-07!10151-102I7;0.472568!10428-106D5;0.539843!10795-110I3;0.8396!10805-111A4;0.699586!10052-101G7;0.833576!10189-103D9;0.655303!10589-108D4;0.747076!10425-106D2;0.843291!10427-106D4;0.00454749!10702-109G9;0.472802!10432-106D9;0.21335!10496-107C1;0.418773!10718-109I7;0.382637!10011-101C2;0.627227!10053-101G8;0.840599!10686-109F2;0.95669!10084-102B3;0.588214!10012-101C3;0.997695!10085-102B4;0.852563!10482-107A5;0.934389!10419-106C5;0.176867!10080-102A8;0.474293!10760-110E4;0.524841!10709-109H7;0.727668!10710-109H8;0.0910779!10703-109H1;0.94535!10719-109I8;0.660542!10642-109A3;0.259961!10177-103C6;0.496102!10164-103B2;0.430123!10173-103C2;0.325255!10166-103B4;0.918048!10083-102B2;0.708785!10188-103D8;0.839814!10552-107I3;0.679258!10553-107I4;0.549042!10013-101C4;0.169329!10536-107G5;0.800259!10618-108G6;0.429818!10423-106C9;0.589261!10785-110H2;0.808863!12238-129G6;0.781141!12239-129G7;0.0189275!12240-129G8;0.931667!10416-106C2;0.158653!10801-110I9;0.215132!10766-110F1;0.245468!10824-111C5;0.491812!10825-111C6;0.645126!10826-111C7;0.760542!10454-106G4;0.757216!10409-106B4;0.927284!10638-108I8;0.670914!10636-108I6;0.765457!10513-107D9;0.0439972!10420-106C6;0.800346!10082-102B1;0.571018!10014-101C5;0.453261!10070-101I7;0.543378!10452-106G2;0.722718!10453-106G3;0.959725!10449-106F8;0.703885!10042-101F6;0.672223!10069-101I6;0.889655!10193-103E4;0.4217!10631-108I1;0.856969!10438-106E6;0.854708!10488-107B2;0.0316029!10196-103E7;0.150625!10071-101I8;0.670409!10071-101I8;0.477366!10041-101F5;0.960782!10451-106G1;0.771593!10450-106F9;0.646184!10604-108F1;0.793178!10605-108F2;0.0953325!10606-108F3;0.0916031!10603-108E9;0.117359!10497-107C2;0.181482!10448-106F7;0.0704583!10643-109A4;0.388938!10426-106D3;0.30206!10431-106D8;0.0018!10197-103E8;0.965461!10443-106F2;0.732043!10815-111B5;0.00595037!10816-111B6;0.207491!10817-111B7;0.204882!10015-101C6;0.230055!10410-106B5;0.956219!10054-101G9;0.897522!10758-110E2;0.821109!10711-109H9;0.533337!10040-101F4;0.969315!10470-106I2;0.994227!10415-106C1;0.178941!10198-103E9;0.545011!10614-108G2;0.948566!10612-108F9;0.482386!10549-107H9;0.143216!10615-108G3;0.978053!10487-107B1;0.796672!10433-106E1;0.42632!10688-109F4;0.0631182!10444-106F3;0.0514113!10444-106F3;0.300723!10485-107A8;0.180469!10413-106B8;0.78549!10175-103C4;0.370738!10161-103A8;0.749071!12131-128D7;0.844977!10624-108H3;0.568809!10712-109I1;0.914009!10205-103F7;0.532291!10206-103F8;0.587298!10207-103F9;0.32114!10050-101G5;0.784315!10051-101G6;0.239535!10016-101C7;0.281685!10046-101G1;0.317861!10778-110G4;0.282356!10633-108I3;0.607688!10818-111B8;0.657575!10819-111B9;0.400044!10820-111C1;0.467277!10484-107A7;0.387557!10808-111A7;0.0301339!10169-103B7;0.776869!10153-102I9;0.531075!13425-144D5;0.561044!13433-144E4;0.383293!13437-144E8;0.342898!11904-125F5;0.220322!11905-125F6;0.901008!10039-101F3;0.132756!10791-110H8;0.936051!10017-101C8;0.503755!10045-101F9;0.285051!10509-107D5;0.513239!10839-111E2;0.482583!10692-109F8;0.947852!10079-102A7;0.171589!10078-102A6;0.269009!10721-110A1;0.240647!10569-108B2;0.349448!10570-108B3;0.297128!10571-108B4;0.279859!10647-109A8;0.1413!10752-110D5;0.98433!10782-110G8;0.979738!10726-110A6;0.61387!10018-101C9;0.884805!10086-102B5;0.860062!10182-103D2;0.299834!10165-103B3;0.663568!10499-107C4;0.736975!10408-106B3;0.233114!10019-101D1;0.0180281!10068-101I5;0.393339!10075-102A3;0.201356!10077-102A5;0.304933!10727-110A7;0.666066!10775-110G1;0.933138!10412-106B7;0.599478!12231-129F8;0.157507!12232-129F9;0.112825!12233-129G1;0.328961!12234-129G2;0.399189!10414-106B9;0.300439!10170-103B8;0.304394!10183-103D3;0.712278!10150-102I6;0.75393!10174-103C3;0.667479!10155-103A2;0.355402!10038-101F2;0.605126!10838-111E1;0.853734!10759-110E3;0.658694!10514-107E1;0.78115!10465-106H6;0.990535!10691-109F7;0.767559!10843-111E6;0.983519!10844-111E7;0.172788!11747-123G1;0.227825!11748-123G2;0.333806!11749-123G3;0.321946!11750-123G4;0.303305!11751-123G5;0.346844!11840-124H4;0.321116!11752-123G6;0.45972!11753-123G7;0.429648!11754-123G8;0.328843!11755-123G9;0.169388!11756-123H1;0.078552!11833-124G6;0.197991!11760-123H5;0.359278!11836-124G9;0.246604!11758-123H3;0.364473!11835-124G8;0.335043!11762-123H7;0.69217!11838-124H2;0.242608!11757-123H2;0.27136!11759-123H4;0.125685!11761-123H6;0.0857583!11842-124H6;0.155355!11837-124H1;0.449597!10568-108B1;0.338679!13230-141I8;0.384599!13231-141I9;0.28602!10696-109G3;0.353444!10493-107B7;0.0823202!10494-107B8;0.0981216!10850-111F4;0.463445!10851-111F5;0.785404!10852-111F6;0.820109!10853-111F7;0.574853!10854-111F8;0.874604!10855-111F9;0.667803!10856-111G1;0.63021!10847-111F1;0.692857!10846-111E9;0.450238!10848-111F2;0.98278!10845-111E8;0.885071!10857-111G2;0.987671!10858-111G3;0.812025!10156-103A3;0.937959!11901-125F2;0.755236!11902-125F3;0.46016!11903-125F4;0.650425!10689-109F5;0.530079!10648-109A9;0.49705!10784-110H1;0.825699!10744-110C6;0.0160305!10772-110F7;0.226432!10474-106I6;0.628756!10600-108E6;0.199106!10684-109E9;0.38443!12226-129F3;0.438001!12227-129F4;0.807273!10508-107D4;0.355909!10539-107G8;0.29192!10607-108F4;0.0304544!10555-107I6;0.950073!10774-110F9;0.205097!10637-108I7;0.704516!10663-109C6;0.393468!10728-110A8;0.876425!10729-110A9;0.0935854!10430-106D7;0.920593!10730-110B1;0.744067!10813-111B3;0.358998!10812-111B2;0.852493!10037-101F1;0.746045!10172-103C1;0.8212!10163-103B1;0.760045!10076-102A4;0.641615!10073-102A1;0.97968!10036-101E9;0.91522!10195-103E6;0.883141!10277-104E7;0.885508!10434-106E2;0.929636!10550-107I1;0.508518!10545-107H5;0.19231!10544-107H4;0.387023!10704-109H2;0.236692!10510-107D6;0.373041!10558-107I9;0.728058!10020-101D2;0.835111!10732-110B3;0.58828!10049-101G4;0.619058!10698-109G5;0.7285!10437-106E5;0.875643!10417-106C3;0.871773!10035-101E8;0.0336441!10171-103B9;0.984056!10157-103A4;0.768511!10034-101E7;0.691987!10072-101I9;0.935357!10199-103F1;0.989899!10200-103F2;0.817295!10697-109G4;0.655877!10723-110A3;0.161102!10179-103C8;0.596984!10160-103A7;0.934637!10180-103C9;0.738935!10162-103A9;0.0856466!10021-101D3;0.122203!10840-111E3;0.588144!10706-109H4;0.607986!10033-101E6;0.211464!10032-101E5;0.970384!10490-107B4;0.998271!10439-106E7;0.949817!10022-101D4;0.0686781!10176-103C5;0.946901!10469-106I1;0.461264!10067-101I4;0.047874!10411-106B6;0.443026!10471-106I3;0.653024!10030-101E3;0.025721!10475-106I7;0.941078!10787-110H4;0.89989!10477-106I9;0.33951!10695-109G2;0.75861!11771-123I7;0.198819!11772-123I8;0.0999301!11773-123I9;0.109529!10093-102C3;0.0117511!10442-106F1;0.9945!10442-106F1;0.991306!10201-103F3;0.988619!10639-108I9;0.970704!11843-124H7;0.0721694!11841-124H5;0.361086!10693-109F9;0.776849!10436-106E4;0.247263!10483-107A6;0.548442!10282-104F3;0.510707!10023-101D5;0.730442!10066-101I3;0.879437!10065-101I2;0.431048!10800-110I8;0.342762!10610-108F7;0.869945!10841-111E4;0.0778426!10541-107H1;0.922492!10842-111E5;0.964302!10562-108A4;0.993612!10024-101D6;0.934212!10064-101I1;0.360994!10609-108F6;0.206281!10048-101G3;0.276276!10781-110G7;0.71251!10181-103D1;0.847591!10159-103A6;0.833224!10056-101H2;0.735739!10737-110B8;0.871311!10025-101D7;0.947416!10044-101F8;0.833242!10424-106D1;0.670307!10463-106H4;0.478226!10616-108G4;0.0725039!10486-107A9;0.165178!10062-101H8;0.147899!10202-103F4;0.632363!10158-103A5;0.507658!10441-106E9;0.801864!10031-101E4;0.987611!10063-101H9;0.878851!10063-101H9;0.947168!11763-123H8;0.462858!11765-123I1;0.258294!11768-123I4;0.798865!10807-111A6;0.282523!10790-110H7;0.519678!10798-110I6;0.441857!10786-110H3;0.273259!10591-108D6;0.241892!10593-108D8;0.529631!10590-108D5;0.512543!10026-101D8;0.573448!10096-102C6;0.060686!10168-103B6;0.0135119!10154-103A1;0.701862!10209-103G2;0.683729!10061-101H7;0.808482!10027-101D9;0.671617!10043-101F7;0.709648!10783-110G9;0.890913!10028-101E1;0.443655!10060-101H6;0.405846!10203-103F5;0.471459!10059-101H5;0.663151!10047-101G2;0.495823!10029-101E2;0.804905!10058-101H4;0.219367!10418-106C4;0.830419!10492-107B6;0.940857!10694-109G1;0.494683!10797-110I5;0.144501!10057-101H3;0.0106512!10100-102D1;0.395298!10055-101H1;0.956106!10204-103F6;0.860328!10191-103E2;0.275016!10563-108A5;0.389948
|name=10-GTTTCTACG,CNhs13237,BestGuess:RFX1_f1_HM09(0.675590669667085),T:710.0(25.47%),B:6908.9(15.69%),P:1e-39
|name=10-GTTTCTACG,CNhs13237,BestGuess:RFX1_f1_HM09(0.675590669667085),T:710.0(25.47%),B:6908.9(15.69%),P:1e-39
|tomtom_result=YPR196W#MA0437.1;0;0.00163284;0.777231;1;9;GTTTCTACG;ATTTCTCCG;+!RGT1#MA0367.1;1;0.00925569;4.40571;1;9;GTTTCTACG;AATTTTTCCGG;+!dl_1#MA0022.1;3;0.0161448;7.68495;1;9;GTTTCTACG;GGGGTTTTTCCC;+!ABF1#MA0265.1;6;0.0189206;9.00621;1;9;GTTTCTACG;ATATCACTTTATACGA;-
}}
}}

Latest revision as of 13:37, 7 September 2012

Full Name: 10-GTTTCTACG,CNhs13237,BestGuess:RFX1_f1_HM09(0.675590669667085),T:710.0(25.47%),B:6908.9(15.69%),P:1e-39

Motif matrix
POACGT
167.4564.61504.173.84
224.1410.6594.43580.78
339.0534.0826.98609.89
485.9149.773.84500.55
561.77524.6997.2726.27
637.6337.6346.86587.88
7543.8675.2638.3452.54
861.77531.7948.2868.16
948.9950.41592.8517.75

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YPR196W#MA0437.100.001632840.77723119GTTTCTACGATTTCTCCG+
RGT1#MA0367.110.009255694.4057119GTTTCTACGAATTTTTCCGG+
dl_1#MA0022.130.01614487.6849519GTTTCTACGGGGGTTTTTCCC+
ABF1#MA0265.160.01892069.0062119GTTTCTACGATATCACTTTATACGA-
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