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MacroAPE 1083:TGACATCATAATG,motif44: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;5.421;2.78;5.421;125.378!2;0.139;13.622;114.397;10.842!3;118.15;4.448;2.78;13.622!4;10.981;119.818;2.78;5.421!5;122.459;8.201;0.139;8.201!6;...")
 
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7-111C8;0.0323225!10789-110H6;0.000575928!10828-111C9;0.0206024!10788-110H5;0.106362!10792-110H9;0.0108213!10765-110E9;0.0370266!10829-111D1;0.000545621!10830-111D2;0.0069869!10831-111D3;0.0163397!10832-111D4;0.00644065!10833-111D5;0.023507!10764-110E8;0.0138139!10770-110F5;0.0820998!10399-106A3;0.0192493!10400-106A4;0.264258!10405-106A9;0.128534!10834-111D6;0.190368!10835-111D7;0.0193816!10836-111D8;0.005585!10837-111D9;0.0114163!10699-109G6;0.00584843!10802-111A1;0.00605225!10796-110I4;0.00688115!10010-101C1;0.00882091!10810-111A9;0.192825!10421-106C7;0.516956!10708-109H6;0.0614666!12235-129G3;0.269683!12236-129G4;0.176637!12237-129G5;0.89329!10167-103B5;0.379211!10151-102I7;0.35895!10428-106D5;0.406739!10795-110I3;0.511834!10805-111A4;0.312543!10052-101G7;0.0666087!10189-103D9;0.572627!10589-108D4;0.852669!10425-106D2;0.0415562!10427-106D4;0.842621!10702-109G9;0.169963!10432-106D9;0.0267193!10496-107C1;0.743495!10718-109I7;0.24111!10011-101C2;0.106885!10053-101G8;0.139252!10686-109F2;0.384345!10084-102B3;0.800199!10012-101C3;0.667897!10085-102B4;0.277024!10482-107A5;0.446118!10419-106C5;0.246692!10080-102A8;0.0120723!10760-110E4;0.9779!10709-109H7;0.0104804!10710-109H8;0.908271!10703-109H1;0.457016!10719-109I8;0.202085!10642-109A3;0.399228!10177-103C6;0.860712!10164-103B2;0.290714!10173-103C2;0.427714!10166-103B4;0.401513!10083-102B2;0.4827!10188-103D8;0.576977!10552-107I3;0.269735!10553-107I4;0.231409!10013-101C4;0.0264835!10536-107G5;0.914432!10618-108G6;0.728848!10423-106C9;0.0895871!10785-110H2;0.249975!12238-129G6;0.151292!12239-129G7;0.00970308!12240-129G8;0.864551!10416-106C2;0.00273675!10801-110I9;0.157553!10766-110F1;0.0591914!10824-111C5;0.0106362!10825-111C6;0.0134073!10826-111C7;0.00711243!10454-106G4;0.0106262!10409-106B4;0.0344225!10638-108I8;0.0538525!10636-108I6;0.653267!10513-107D9;0.946188!10420-106C6;0.429033!10082-102B1;0.025744!10014-101C5;0.546496!10070-101I7;0.631863!10452-106G2;0.326115!10453-106G3;0.109666!10449-106F8;0.0271639!10042-101F6;0.0117804!10069-101I6;0.429512!10193-103E4;0.273792!10631-108I1;0.349053!10438-106E6;0.0967575!10488-107B2;0.227324!10196-103E7;0.199938!10071-101I8;0.197933!10071-101I8;0.89191!10041-101F5;0.272143!10451-106G1;0.253713!10450-106F9;0.106387!10604-108F1;0.044099!10605-108F2;0.0916677!10606-108F3;0.264347!10603-108E9;0.195403!10497-107C2;0.270148!10448-106F7;0.743013!10643-109A4;0.757891!10426-106D3;0.883766!10431-106D8;0.30668!10197-103E8;0.177191!10443-106F2;0.16549!10815-111B5;0.0116595!10816-111B6;0.0175218!10817-111B7;0.00932958!10015-101C6;0.0177095!10410-106B5;0.186907!10054-101G9;0.68598!10758-110E2;0.563197!10711-109H9;0.152002!10040-101F4;0.154581!10470-106I2;0.186921!10415-106C1;0.485631!10198-103E9;0.852637!10614-108G2;0.567033!10612-108F9;0.628505!10549-107H9;0.0141925!10615-108G3;0.0324523!10487-107B1;0.119286!10433-106E1;0.131682!10688-109F4;0.128039!10444-106F3;0.18934!10444-106F3;0.00439432!10485-107A8;0.00815624!10413-106B8;0.362327!10175-103C4;0.307781!10161-103A8;0.435436!12131-128D7;0.715306!10624-108H3;0.185211!10712-109I1;0.581612!10205-103F7;0.0444052!10206-103F8;0.134282!10207-103F9;0.421908!10050-101G5;0.982238!10051-101G6;0.071348!10016-101C7;0.982261!10046-101G1;0.705168!10778-110G4;0.969163!10633-108I3;0.41774!10818-111B8;0.572199!10819-111B9;0.996518!10820-111C1;0.895008!10484-107A7;0.842166!10808-111A7;0.184318!10169-103B7;0.00820999!10153-102I9;0.235919!13425-144D5;0.431856!13433-144E4;0.487411!13437-144E8;0.769647!11904-125F5;0.983484!11905-125F6;0.377842!10039-101F3;0.277857!10791-110H8;0.166896!10017-101C8;0.0160772!10045-101F9;0.739899!10509-107D5;0.815365!10839-111E2;0.763091!10692-109F8;0.24024!10079-102A7;0.00209781!10078-102A6;0.921426!10721-110A1;0.353072!10569-108B2;0.00439452!10570-108B3;0.650007!10571-108B4;0.610891!10647-109A8;0.322374!10752-110D5;0.336776!10782-110G8;0.0900849!10726-110A6;0.419149!10018-101C9;0.0192489!10086-102B5;0.72434!10182-103D2;0.0766964!10165-103B3;0.377724!10499-107C4;0.414714!10408-106B3;0.100028!10019-101D1;0.0584253!10068-101I5;0.0263823!10075-102A3;0.00560676!10077-102A5;0.0219103!10727-110A7;0.615516!10775-110G1;0.0609653!10412-106B7;0.0707375!12231-129F8;0.0110333!12232-129F9;0.270839!12233-129G1;0.103831!12234-129G2;0.183013!10414-106B9;0.0608658!10170-103B8;0.111078!10183-103D3;0.279753!10150-102I6;0.337175!10174-103C3;0.466964!10155-103A2;0.721255!10038-101F2;0.70844!10838-111E1;0.409447!10759-110E3;0.355121!10514-107E1;0.0334661!10465-106H6;0.789222!10691-109F7;0.783348!10843-111E6;0.251324!10844-111E7;0.562324!11747-123G1;0.825061!11748-123G2;0.0554889!11749-123G3;0.1066!11750-123G4;0.0300164!11751-123G5;0.056185!11840-124H4;0.0247691!11752-123G6;0.00730932!11753-123G7;0.306605!11754-123G8;0.0406666!11755-123G9;0.0272829!11756-123H1;0.259036!11833-124G6;0.20557!11760-123H5;0.427794!11836-124G9;0.0921384!11758-123H3;0.161991!11835-124G8;0.039625!11762-123H7;0.105469!11838-124H2;0.0229237!11757-123H2;0.193007!11759-123H4;0.0225703!11761-123H6;0.0625885!11842-124H6;0.0596441!11837-124H1;0.037161!10568-108B1;0.152581!13230-141I8;0.140353!13231-141I9;0.153275!10696-109G3;0.159723!10493-107B7;0.44963!10494-107B8;0.0252337!10850-111F4;0.330316!10851-111F5;0.0332073!10852-111F6;0.516552!10853-111F7;0.659065!10854-111F8;0.274393!10855-111F9;0.582865!10856-111G1;0.650763!10847-111F1;0.28535!10846-111E9;0.183682!10848-111F2;0.0857288!10845-111E8;0.0309347!10857-111G2;0.129022!10858-111G3;0.0413475!10156-103A3;0.0495393!11901-125F2;0.47894!11902-125F3;0.436145!11903-125F4;0.343996!10689-109F5;0.453734!10648-109A9;0.360724!10784-110H1;0.102295!10744-110C6;0.079413!10772-110F7;0.14733!10474-106I6;0.00370095!10600-108E6;0.252621!10684-109E9;0.0794256!12226-129F3;0.452209!12227-129F4;0.77531!10508-107D4;0.830918!10539-107G8;0.835924!10607-108F4;0.926784!10555-107I6;0.309455!10774-110F9;0.530155!10637-108I7;0.16198!10663-109C6;0.517481!10728-110A8;0.372698!10729-110A9;0.124826!10430-106D7;0.376431!10730-110B1;0.10467!10813-111B3;0.631163!10812-111B2;0.180532!10037-101F1;0.64948!10172-103C1;0.207574!10163-103B1;0.384736!10076-102A4;0.551362!10073-102A1;0.320536!10036-101E9;0.298102!10195-103E6;0.28359!10277-104E7;0.297711!10434-106E2;0.247745!10550-107I1;0.0191428!10545-107H5;0.0307964!10544-107H4;0.0141221!10704-109H2;0.096851!10510-107D6;0.763641!10558-107I9;0.274166!10020-101D2;0.521852!10732-110B3;0.541445!10049-101G4;0.344808!10698-109G5;0.341403!10437-106E5;0.049108!10417-106C3;0.475472!10035-101E8;0.82217!10171-103B9;0.230729!10157-103A4;0.606836!10034-101E7;0.395989!10072-101I9;0.229187!10199-103F1;0.494101!10200-103F2;0.600299!10697-109G4;0.174553!10723-110A3;0.573114!10179-103C8;0.0106203!10160-103A7;0.578389!10180-103C9;0.709937!10162-103A9;0.0789589!10021-101D3;0.176247!10840-111E3;0.360688!10706-109H4;0.255791!10033-101E6;0.112635!10032-101E5;0.313527!10490-107B4;0.267351!10439-106E7;0.202681!10022-101D4;0.0107393!10176-103C5;0.410774!10469-106I1;0.367137!10067-101I4;0.320576!10411-106B6;0.512115!10471-106I3;0.125622!10030-101E3;0.0158013!10475-106I7;0.662685!10787-110H4;0.25342!10477-106I9;0.566672!10695-109G2;0.745439!11771-123I7;0.715404!11772-123I8;0.48338!11773-123I9;0.697798!10093-102C3;0.837213!10442-106F1;0.520062!10442-106F1;0.0340537!10201-103F3;0.0730463!10639-108I9;0.295133!11843-124H7;0.229228!11841-124H5;0.986735!10693-109F9;0.945195!10436-106E4;0.810985!10483-107A6;0.242788!10282-104F3;0.282646!10023-101D5;0.288618!10066-101I3;0.429287!10065-101I2;0.726567!10800-110I8;0.416266!10610-108F7;0.234879!10841-111E4;0.179557!10541-107H1;0.579812!10842-111E5;0.32683!10562-108A4;0.281012!10024-101D6;0.71027!10064-101I1;0.786905!10609-108F6;0.981322!10048-101G3;0.270744!10781-110G7;0.285285!10181-103D1;0.314921!10159-103A6;0.633174!10056-101H2;0.953894!10737-110B8;0.623104!10025-101D7;0.639201!10044-101F8;0.678145!10424-106D1;0.857657!10463-106H4;0.080686!10616-108G4;0.0464287!10486-107A9;0.591167!10062-101H8;0.98467!10202-103F4;0.593726!10158-103A5;0.533901!10441-106E9;0.820403!10031-101E4;0.139661!10063-101H9;0.263814!10063-101H9;0.388903!11763-123H8;0.487757!11765-123I1;0.156257!11768-123I4;0.337314!10807-111A6;0.254064!10790-110H7;0.95999!10798-110I6;0.425565!10786-110H3;0.96859!10591-108D6;0.376203!10593-108D8;0.462205!10590-108D5;0.527974!10026-101D8;0.183681!10096-102C6;3.39142e-06!10168-103B6;2.56348e-07!10154-103A1;0.444293!10209-103G2;0.591978!10061-101H7;0.355773!10027-101D9;0.406586!10043-101F7;0.378051!10783-110G9;0.86773!10028-101E1;0.400543!10060-101H6;0.0247152!10203-103F5;0.0507399!10059-101H5;0.326726!10047-101G2;0.676077!10029-101E2;0.779846!10058-101H4;0.329408!10418-106C4;0.332078!10492-107B6;0.00298662!10694-109G1;0.000627693!10797-110I5;0.442507!10057-101H3;0.255803!10100-102D1;0.832536!10055-101H1;0.734981!10204-103F6;0.83779!10191-103E2;0.671237!10563-108A5;0.111669
|name=TGACATCATAATG,motif44,CNhs12998,T:139.0(3.32%),B:259.1(0.35%),P:1e-83
|name=TGACATCATAATG,motif44,CNhs12998,T:139.0(3.32%),B:259.1(0.35%),P:1e-83
|tomtom_result=CREB1#MA0018.2;0;0.00125687;0.598271;0.818998;8;TGACATCATAATG;TGACGTCA;+!CST6#MA0286.1;0;0.00470059;2.23748;0.941431;9;TGACATCATAATG;TTACGTCAT;-!Sox2#MA0143.1;1;0.00490103;2.33289;0.941431;13;TGACATCATAATG;TTTGCATAACAAAGG;-!hth#MA0227.1;0;0.00506433;2.41062;0.941431;6;TGACATCATAATG;TGACAG;+!Pou5f1#MA0142.1;2;0.00593339;2.82429;0.941431;13;TGACATCATAATG;ATTTGCATAACAAAG;-!RXR::RAR_DR5#MA0159.1;0;0.00936921;4.45974;1;13;TGACATCATAATG;TGACCTCTCCGTGACCT;-!vis#MA0252.1;0;0.0103159;4.91036;1;6;TGACATCATAATG;TGACAG;+!CUP9#MA0288.1;0;0.0123586;5.8827;1;9;TGACATCATAATG;TGACACATT;+!achi#MA0207.1;0;0.013573;6.46073;1;6;TGACATCATAATG;TGACAG;+!CREB1#MA0018.2;-1;0.0183044;8.71291;1;12;TGACATCATAATG;GACGTCACCAGG;-!bZIP910#MA0096.1;-2;0.0184168;8.76639;1;7;TGACATCATAATG;ACGTCAT;-!Abd-B#MA0165.1;-5;0.0184168;8.76639;1;7;TGACATCATAATG;TCATAAA;-
}}
}}

Latest revision as of 13:41, 7 September 2012

Full Name: TGACATCATAATG,motif44,CNhs12998,T:139.0(3.32%),B:259.1(0.35%),P:1e-83

Motif matrix
POACGT
15.4212.785.421125.378
20.13913.622114.39710.842
3118.154.4482.7813.622
410.981119.8182.785.421
5122.4598.2010.1398.201
610.0085.4218.201115.37
74.448126.3515.4212.78
8120.7919.8690.1398.201
90.13910.84221.823106.196
10129.270.1394.175.421
11118.2896.9510.9812.78
1210.8420.1398.201119.818
1310.9815.421106.19616.402

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CREB1#MA0018.200.001256870.5982710.8189988TGACATCATAATGTGACGTCA+
CST6#MA0286.100.004700592.237480.9414319TGACATCATAATGTTACGTCAT-
Sox2#MA0143.110.004901032.332890.94143113TGACATCATAATGTTTGCATAACAAAGG-
hth#MA0227.100.005064332.410620.9414316TGACATCATAATGTGACAG+
Pou5f1#MA0142.120.005933392.824290.94143113TGACATCATAATGATTTGCATAACAAAG-
RXR::RAR_DR5#MA0159.100.009369214.45974113TGACATCATAATGTGACCTCTCCGTGACCT-
vis#MA0252.100.01031594.9103616TGACATCATAATGTGACAG+
CUP9#MA0288.100.01235865.882719TGACATCATAATGTGACACATT+
achi#MA0207.100.0135736.4607316TGACATCATAATGTGACAG+
CREB1#MA0018.2-10.01830448.71291112TGACATCATAATGGACGTCACCAGG-
bZIP910#MA0096.1-20.01841688.7663917TGACATCATAATGACGTCAT-
Abd-B#MA0165.1-50.01841688.7663917TGACATCATAATGTCATAAA-
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