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MacroAPE 1083:Motif499: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;0;70375!02;0;0;23614;46761!03;4042;32245;0;34088!04;0;70375;0;0!05;0;70375;0;0!06;0;70375;0;0!07;0;0;0;70375 |macroape_1083_sample_pva...")
 
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698622!10789-110H6;0.999624!10828-111C9;0.609214!10788-110H5;0.69867!10792-110H9;0.755869!10765-110E9;0.90252!10829-111D1;0.607655!10830-111D2;0.941688!10831-111D3;0.740528!10832-111D4;0.89884!10833-111D5;0.584557!10764-110E8;0.529494!10770-110F5;0.60534!10399-106A3;0.834149!10400-106A4;0.767467!10405-106A9;0.660776!10834-111D6;0.786593!10835-111D7;0.802308!10836-111D8;0.98675!10837-111D9;0.935525!10699-109G6;0.990551!10802-111A1;0.637783!10796-110I4;0.803121!10010-101C1;0.772554!10810-111A9;0.217144!10421-106C7;0.311956!10708-109H6;0.329146!12235-129G3;0.121265!12236-129G4;0.396021!12237-129G5;0.849253!10167-103B5;0.610128!10151-102I7;0.423593!10428-106D5;0.553464!10795-110I3;0.218775!10805-111A4;0.903573!10052-101G7;0.284445!10189-103D9;0.365248!10589-108D4;0.0174738!10425-106D2;0.307415!10427-106D4;0.0421688!10702-109G9;0.208073!10432-106D9;0.920897!10496-107C1;0.798249!10718-109I7;0.763095!10011-101C2;0.931527!10053-101G8;0.475702!10686-109F2;0.0771334!10084-102B3;0.353469!10012-101C3;0.810106!10085-102B4;0.600324!10482-107A5;0.320483!10419-106C5;0.140695!10080-102A8;0.203441!10760-110E4;0.759199!10709-109H7;0.590275!10710-109H8;0.33958!10703-109H1;0.0852166!10719-109I8;0.136641!10642-109A3;0.0753901!10177-103C6;0.0600879!10164-103B2;0.564261!10173-103C2;0.45174!10166-103B4;0.519224!10083-102B2;0.515575!10188-103D8;0.740993!10552-107I3;0.589605!10553-107I4;0.661766!10013-101C4;0.404233!10536-107G5;0.753814!10618-108G6;0.00419544!10423-106C9;0.0818001!10785-110H2;0.570251!12238-129G6;0.556118!12239-129G7;0.349127!12240-129G8;0.638849!10416-106C2;0.452239!10801-110I9;0.793273!10766-110F1;0.888821!10824-111C5;0.584889!10825-111C6;0.673273!10826-111C7;0.67217!10454-106G4;0.636528!10409-106B4;0.907646!10638-108I8;0.786433!10636-108I6;0.651073!10513-107D9;0.577586!10420-106C6;0.10196!10082-102B1;0.13674!10014-101C5;0.218072!10070-101I7;0.458857!10452-106G2;0.441448!10453-106G3;0.983672!10449-106F8;0.948734!10042-101F6;0.994786!10069-101I6;0.79864!10193-103E4;0.117708!10631-108I1;0.721916!10438-106E6;0.97364!10488-107B2;0.131806!10196-103E7;0.604796!10071-101I8;0.340479!10071-101I8;0.150336!10041-101F5;0.243751!10451-106G1;0.290901!10450-106F9;0.399228!10604-108F1;0.162522!10605-108F2;0.86638!10606-108F3;0.809272!10603-108E9;0.947304!10497-107C2;0.917029!10448-106F7;0.839769!10643-109A4;0.140587!10426-106D3;0.718245!10431-106D8;0.888026!10197-103E8;0.759414!10443-106F2;0.410034!10815-111B5;0.619088!10816-111B6;0.580435!10817-111B7;0.439814!10015-101C6;0.567889!10410-106B5;0.148617!10054-101G9;0.51666!10758-110E2;0.683186!10711-109H9;0.0867624!10040-101F4;0.383925!10470-106I2;0.594793!10415-106C1;0.285325!10198-103E9;0.356704!10614-108G2;0.247723!10612-108F9;0.867442!10549-107H9;0.976838!10615-108G3;0.0906228!10487-107B1;0.0420575!10433-106E1;0.719334!10688-109F4;0.195912!10444-106F3;0.230192!10444-106F3;0.277546!10485-107A8;0.201537!10413-106B8;0.0716606!10175-103C4;0.00551089!10161-103A8;0.84114!12131-128D7;0.879498!10624-108H3;0.591454!10712-109I1;0.955692!10205-103F7;0.717997!10206-103F8;0.408273!10207-103F9;0.336411!10050-101G5;0.471969!10051-101G6;0.235236!10016-101C7;0.184851!10046-101G1;0.179984!10778-110G4;0.243423!10633-108I3;0.741036!10818-111B8;0.0882544!10819-111B9;0.873736!10820-111C1;0.937557!10484-107A7;0.838351!10808-111A7;0.144816!10169-103B7;0.997307!10153-102I9;0.581582!13425-144D5;0.639084!13433-144E4;0.230037!13437-144E8;0.169585!11904-125F5;0.15812!11905-125F6;0.191967!10039-101F3;0.08096!10791-110H8;0.709398!10017-101C8;0.504153!10045-101F9;0.431829!10509-107D5;0.55519!10839-111E2;0.97888!10692-109F8;0.33952!10079-102A7;0.60006!10078-102A6;0.13721!10721-110A1;0.299023!10569-108B2;0.199428!10570-108B3;0.660478!10571-108B4;0.41935!10647-109A8;0.18652!10752-110D5;0.115683!10782-110G8;0.953523!10726-110A6;0.0353515!10018-101C9;0.718287!10086-102B5;0.566181!10182-103D2;0.449481!10165-103B3;0.798076!10499-107C4;0.724989!10408-106B3;0.291601!10019-101D1;0.841006!10068-101I5;0.180326!10075-102A3;0.260595!10077-102A5;0.172771!10727-110A7;0.240013!10775-110G1;0.499032!10412-106B7;0.820011!12231-129F8;0.775801!12232-129F9;0.577646!12233-129G1;0.460389!12234-129G2;0.370038!10414-106B9;0.718581!10170-103B8;0.103296!10183-103D3;0.437678!10150-102I6;0.429133!10174-103C3;0.496444!10155-103A2;0.941888!10038-101F2;0.996316!10838-111E1;0.744361!10759-110E3;0.217459!10514-107E1;0.384958!10465-106H6;0.00410781!10691-109F7;0.00883324!10843-111E6;0.735229!10844-111E7;0.0558687!11747-123G1;0.0634581!11748-123G2;0.0184665!11749-123G3;0.176027!11750-123G4;0.0421448!11751-123G5;0.00325179!11840-124H4;0.066359!11752-123G6;0.330402!11753-123G7;0.185045!11754-123G8;0.0720807!11755-123G9;0.0672697!11756-123H1;0.015719!11833-124G6;0.0227863!11760-123H5;0.465056!11836-124G9;0.0352716!11758-123H3;0.0920097!11835-124G8;0.100537!11762-123H7;0.481807!11838-124H2;0.343612!11757-123H2;0.392607!11759-123H4;0.0044474!11761-123H6;0.0312862!11842-124H6;0.171158!11837-124H1;0.280655!10568-108B1;0.274298!13230-141I8;0.761866!13231-141I9;0.595387!10696-109G3;0.688533!10493-107B7;0.25961!10494-107B8;0.902543!10850-111F4;0.227893!10851-111F5;0.788821!10852-111F6;0.356897!10853-111F7;0.445481!10854-111F8;0.165969!10855-111F9;0.122886!10856-111G1;0.727494!10847-111F1;0.0809994!10846-111E9;0.0390812!10848-111F2;0.0978488!10845-111E8;0.155676!10857-111G2;0.092004!10858-111G3;0.926006!10156-103A3;0.433484!11901-125F2;0.557894!11902-125F3;0.478213!11903-125F4;0.207953!10689-109F5;0.372958!10648-109A9;0.711273!10784-110H1;0.494473!10744-110C6;0.987404!10772-110F7;0.40907!10474-106I6;0.612562!10600-108E6;0.604704!10684-109E9;0.142572!12226-129F3;0.00153085!12227-129F4;0.335501!10508-107D4;0.52042!10539-107G8;0.108862!10607-108F4;0.162812!10555-107I6;0.0595026!10774-110F9;0.225569!10637-108I7;0.519245!10663-109C6;0.130537!10728-110A8;0.129681!10729-110A9;0.33119!10430-106D7;0.846226!10730-110B1;0.416019!10813-111B3;0.0169221!10812-111B2;0.424342!10037-101F1;0.22127!10172-103C1;0.603961!10163-103B1;0.382809!10076-102A4;0.615895!10073-102A1;0.496366!10036-101E9;0.161559!10195-103E6;0.69379!10277-104E7;0.578731!10434-106E2;0.914356!10550-107I1;0.592947!10545-107H5;0.191146!10544-107H4;0.596703!10704-109H2;0.843293!10510-107D6;0.998086!10558-107I9;0.362611!10020-101D2;0.195783!10732-110B3;0.921488!10049-101G4;0.0960278!10698-109G5;0.251673!10437-106E5;0.63242!10417-106C3;0.518069!10035-101E8;0.497708!10171-103B9;0.63726!10157-103A4;0.346237!10034-101E7;0.561187!10072-101I9;0.662532!10199-103F1;0.205984!10200-103F2;0.491134!10697-109G4;0.125592!10723-110A3;0.0417577!10179-103C8;0.941218!10160-103A7;0.68072!10180-103C9;0.520426!10162-103A9;0.346795!10021-101D3;0.337687!10840-111E3;0.41476!10706-109H4;0.537668!10033-101E6;0.231579!10032-101E5;0.897035!10490-107B4;0.700214!10439-106E7;0.330613!10022-101D4;0.178526!10176-103C5;0.624043!10469-106I1;0.451366!10067-101I4;0.367932!10411-106B6;0.90584!10471-106I3;0.559799!10030-101E3;0.727996!10475-106I7;0.836544!10787-110H4;0.0979972!10477-106I9;0.373302!10695-109G2;0.0934114!11771-123I7;0.524842!11772-123I8;0.549992!11773-123I9;0.40645!10093-102C3;0.9308!10442-106F1;0.278162!10442-106F1;0.221422!10201-103F3;0.186663!10639-108I9;0.505811!11843-124H7;0.454091!11841-124H5;0.448531!10693-109F9;0.633599!10436-106E4;0.864122!10483-107A6;0.685971!10282-104F3;0.818511!10023-101D5;0.116255!10066-101I3;0.10889!10065-101I2;0.126742!10800-110I8;0.281558!10610-108F7;0.0738937!10841-111E4;0.191417!10541-107H1;0.227642!10842-111E5;0.01173!10562-108A4;0.137248!10024-101D6;0.0772836!10064-101I1;0.230978!10609-108F6;0.47604!10048-101G3;0.0247591!10781-110G7;0.573565!10181-103D1;0.0760134!10159-103A6;0.919829!10056-101H2;0.932807!10737-110B8;0.821031!10025-101D7;0.682374!10044-101F8;0.0385077!10424-106D1;0.0130038!10463-106H4;0.508143!10616-108G4;0.707725!10486-107A9;0.565077!10062-101H8;0.913541!10202-103F4;0.373736!10158-103A5;0.202652!10441-106E9;0.764377!10031-101E4;0.0772277!10063-101H9;0.785803!10063-101H9;0.236793!11763-123H8;0.464784!11765-123I1;0.345461!11768-123I4;0.586075!10807-111A6;0.463767!10790-110H7;0.189962!10798-110I6;0.215434!10786-110H3;0.344356!10591-108D6;0.760053!10593-108D8;0.172088!10590-108D5;0.135256!10026-101D8;0.412429!10096-102C6;0.944459!10168-103B6;0.264271!10154-103A1;0.857179!10209-103G2;0.819614!10061-101H7;0.0472451!10027-101D9;0.214256!10043-101F7;0.158554!10783-110G9;0.00130481!10028-101E1;0.188148!10060-101H6;0.934994!10203-103F5;0.812243!10059-101H5;0.029847!10047-101G2;0.0794016!10029-101E2;0.00173279!10058-101H4;0.197579!10418-106C4;0.168455!10492-107B6;0.232745!10694-109G1;0.281405!10797-110I5;0.146195!10057-101H3;0.638193!10100-102D1;0.338333!10055-101H1;0.983824!10204-103F6;0.916406!10191-103E2;0.471272!10563-108A5;0.0335002
|name=motif499
|name=motif499
|tomtom_result=RGM1#MA0366.1;-2;0.000171655;0.081708;0.162857;5;TTTCCCT;CCCCT;-!MSN4#MA0342.1;-2;0.00047066;0.224034;0.223268;5;TTTCCCT;CCCCT;-!MSN2#MA0341.1;-2;0.00202421;0.963525;0.516075;5;TTTCCCT;CCCCT;-!id1#MA0120.1;1;0.00221547;1.05456;0.516075;7;TTTCCCT;TTTTCCTTTTCG;+!SPIB#MA0081.1;0;0.00315708;1.50277;0.516075;7;TTTCCCT;TTCCTCT;-!ZMS1#MA0441.1;0;0.00352393;1.67739;0.516075;7;TTTCCCT;TTCCCCGCA;+!NFKB1#MA0105.1;5;0.00420276;2.00051;0.516075;6;TTTCCCT;GGGGATTCCCC;+!MZF1_5-13#MA0057.1;1;0.00435165;2.07139;0.516075;7;TTTCCCT;TTCCCCCTAC;-!Klf4#MA0039.1;2;0.0067709;3.22295;0.609848;7;TTTCCCT;CCTTCCTTTA;-!Spz1#MA0111.1;4;0.00739222;3.5187;0.609848;7;TTTCCCT;GCTGTTACCCT;-!YRM1#MA0438.1;1;0.00754396;3.59093;0.609848;7;TTTCCCT;ATTTCCGT;-!REI1#MA0364.1;-2;0.00771354;3.67164;0.609848;5;TTTCCCT;CCCCTGA;+!REB1#MA0363.1;1;0.00959245;4.56601;0.70006;7;TTTCCCT;GTTACCCGG;+!MZF1_1-4#MA0056.1;-1;0.0110245;5.24766;0.747101;6;TTTCCCT;TCCCCA;-!GIS1#MA0306.1;-1;0.0165646;7.88474;0.838582;6;TTTCCCT;ACCCCTAAA;+!YKL222C#MA0428.1;1;0.0174482;8.30536;0.838582;7;TTTCCCT;ATTTCCGTT;-!dl_1#MA0022.1;6;0.0181853;8.65622;0.838582;6;TTTCCCT;GGGGTTTTTCCC;+!RPH1#MA0372.1;-1;0.0184988;8.80543;0.838582;6;TTTCCCT;ACCCCTAA;+!USV1#MA0413.1;4;0.0188615;8.97807;0.838582;7;TTTCCCT;AAATTCCCCCTGAATTTGTG;+!EBF1#MA0154.1;-2;0.019267;9.17109;0.838582;5;TTTCCCT;TCCCTTGGGT;-!YPR196W#MA0437.1;2;0.0193726;9.22137;0.838582;7;TTTCCCT;ATTTCTCCG;+!PPARG::RXRA#MA0065.2;6;0.0199056;9.47508;0.838582;7;TTTCCCT;TGACCTTTGCCCTAC;-!IRF1#MA0050.1;2;0.0203294;9.67679;0.838582;7;TTTCCCT;GGTTTCACTTTC;-
}}
}}

Latest revision as of 13:49, 7 September 2012

Full Name: motif499

Motif matrix
POACGT
0100070375
02002361446761
03404232245034088
0407037500
0507037500
0607037500
0700070375

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RGM1#MA0366.1-20.0001716550.0817080.1628575TTTCCCTCCCCT-
MSN4#MA0342.1-20.000470660.2240340.2232685TTTCCCTCCCCT-
MSN2#MA0341.1-20.002024210.9635250.5160755TTTCCCTCCCCT-
id1#MA0120.110.002215471.054560.5160757TTTCCCTTTTTCCTTTTCG+
SPIB#MA0081.100.003157081.502770.5160757TTTCCCTTTCCTCT-
ZMS1#MA0441.100.003523931.677390.5160757TTTCCCTTTCCCCGCA+
NFKB1#MA0105.150.004202762.000510.5160756TTTCCCTGGGGATTCCCC+
MZF1_5-13#MA0057.110.004351652.071390.5160757TTTCCCTTTCCCCCTAC-
Klf4#MA0039.120.00677093.222950.6098487TTTCCCTCCTTCCTTTA-
Spz1#MA0111.140.007392223.51870.6098487TTTCCCTGCTGTTACCCT-
YRM1#MA0438.110.007543963.590930.6098487TTTCCCTATTTCCGT-
REI1#MA0364.1-20.007713543.671640.6098485TTTCCCTCCCCTGA+
REB1#MA0363.110.009592454.566010.700067TTTCCCTGTTACCCGG+
MZF1_1-4#MA0056.1-10.01102455.247660.7471016TTTCCCTTCCCCA-
GIS1#MA0306.1-10.01656467.884740.8385826TTTCCCTACCCCTAAA+
YKL222C#MA0428.110.01744828.305360.8385827TTTCCCTATTTCCGTT-
dl_1#MA0022.160.01818538.656220.8385826TTTCCCTGGGGTTTTTCCC+
RPH1#MA0372.1-10.01849888.805430.8385826TTTCCCTACCCCTAA+
USV1#MA0413.140.01886158.978070.8385827TTTCCCTAAATTCCCCCTGAATTTGTG+
EBF1#MA0154.1-20.0192679.171090.8385825TTTCCCTTCCCTTGGGT-
YPR196W#MA0437.120.01937269.221370.8385827TTTCCCTATTTCTCCG+
PPARG::RXRA#MA0065.260.01990569.475080.8385827TTTCCCTTGACCTTTGCCCTAC-
IRF1#MA0050.120.02032949.676790.8385827TTTCCCTGGTTTCACTTTC-
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