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MacroAPE 1083:CGCTCTCKCT,motif771: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;84.01;1086.71;97.56;86.72!2;96.205;33.875;768.285;456.635!3;172.085;860.425;239.835;82.655!4;70.46;77.235;6.775;1200.53!5;12.195;1050.125;16...")
 
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0455-106G5;0.795153!10534-107G3;0.20933!10429-106D6;0.990388!10464-106H5;0.974387!10827-111C8;0.547447!10789-110H6;0.167627!10828-111C9;0.0218418!10788-110H5;0.105823!10792-110H9;0.967327!10765-110E9;0.130431!10829-111D1;0.427528!10830-111D2;0.281538!10831-111D3;0.900544!10832-111D4;0.188922!10833-111D5;0.451359!10764-110E8;0.631011!10770-110F5;0.708726!10399-106A3;0.223025!10400-106A4;0.627111!10405-106A9;0.528832!10834-111D6;0.550242!10835-111D7;0.32654!10836-111D8;0.606661!10837-111D9;0.893981!10699-109G6;0.0767217!10802-111A1;0.258806!10796-110I4;0.332675!10010-101C1;0.848508!10810-111A9;0.537188!10421-106C7;0.929134!10708-109H6;0.00917263!12235-129G3;0.68893!12236-129G4;0.0719972!12237-129G5;0.350495!10167-103B5;0.309575!10151-102I7;0.000307585!10428-106D5;0.000460208!10795-110I3;0.00949321!10805-111A4;0.449331!10052-101G7;0.314928!10189-103D9;0.333899!10589-108D4;0.665975!10425-106D2;0.053829!10427-106D4;0.00322583!10702-109G9;0.427199!10432-106D9;0.0118383!10496-107C1;0.408951!10718-109I7;0.827906!10011-101C2;0.346583!10053-101G8;0.381406!10686-109F2;0.0686155!10084-102B3;0.186754!10012-101C3;3.30326e-05!10085-102B4;0.000160463!10482-107A5;2.2617e-05!10419-106C5;0.679106!10080-102A8;0.968313!10760-110E4;0.686388!10709-109H7;0.490531!10710-109H8;0.345029!10703-109H1;0.642235!10719-109I8;0.00318254!10642-109A3;0.022556!10177-103C6;0.00399751!10164-103B2;0.000786366!10173-103C2;0.000553878!10166-103B4;0.000645177!10083-102B2;0.000228982!10188-103D8;8.96402e-05!10552-107I3;3.36626e-05!10553-107I4;0.384419!10013-101C4;0.837577!10536-107G5;0.466755!10618-108G6;0.0552996!10423-106C9;0.934797!10785-110H2;0.621139!12238-129G6;0.565997!12239-129G7;0.085143!12240-129G8;0.097954!10416-106C2;0.133866!10801-110I9;0.588741!10766-110F1;0.0777789!10824-111C5;0.0955031!10825-111C6;0.865354!10826-111C7;0.857806!10454-106G4;0.571062!10409-106B4;0.942967!10638-108I8;0.218084!10636-108I6;0.84139!10513-107D9;0.188051!10420-106C6;0.251102!10082-102B1;0.199117!10014-101C5;0.354428!10070-101I7;0.649734!10452-106G2;0.347771!10453-106G3;0.934694!10449-106F8;0.726784!10042-101F6;0.68918!10069-101I6;0.00131001!10193-103E4;0.914697!10631-108I1;5.09819e-05!10438-106E6;0.290216!10488-107B2;0.181565!10196-103E7;0.521296!10071-101I8;0.145806!10071-101I8;0.222018!10041-101F5;8.73928e-05!10451-106G1;0.336413!10450-106F9;0.508776!10604-108F1;0.0180189!10605-108F2;0.334378!10606-108F3;0.55897!10603-108E9;0.200472!10497-107C2;0.212305!10448-106F7;0.268412!10643-109A4;0.934371!10426-106D3;0.700835!10431-106D8;0.501425!10197-103E8;0.772694!10443-106F2;0.855644!10815-111B5;0.030484!10816-111B6;0.484558!10817-111B7;0.436856!10015-101C6;0.478499!10410-106B5;0.958769!10054-101G9;0.768069!10758-110E2;0.0109084!10711-109H9;0.775884!10040-101F4;0.557875!10470-106I2;0.000187611!10415-106C1;0.965353!10198-103E9;0.305105!10614-108G2;0.559975!10612-108F9;0.974623!10549-107H9;0.586551!10615-108G3;0.556545!10487-107B1;0.0251736!10433-106E1;0.359898!10688-109F4;0.955472!10444-106F3;0.452526!10444-106F3;0.985532!10485-107A8;0.845103!10413-106B8;0.333525!10175-103C4;0.472895!10161-103A8;0.000783785!12131-128D7;0.00203149!10624-108H3;0.970629!10712-109I1;0.496052!10205-103F7;0.0452133!10206-103F8;0.960292!10207-103F9;0.629639!10050-101G5;0.938333!10051-101G6;0.396691!10016-101C7;0.407151!10046-101G1;0.469568!10778-110G4;0.580287!10633-108I3;0.205783!10818-111B8;0.392791!10819-111B9;0.464554!10820-111C1;0.358004!10484-107A7;0.459772!10808-111A7;0.0540255!10169-103B7;0.097263!10153-102I9;0.000199507!13425-144D5;0.00025168!13433-144E4;0.339354!13437-144E8;0.364922!11904-125F5;0.339475!11905-125F6;0.0766603!10039-101F3;0.164444!10791-110H8;0.00012338!10017-101C8;0.777931!10045-101F9;0.989775!10509-107D5;0.0592326!10839-111E2;0.588747!10692-109F8;0.799926!10079-102A7;0.674272!10078-102A6;0.571196!10721-110A1;0.189531!10569-108B2;0.0927676!10570-108B3;0.598106!10571-108B4;0.0773051!10647-109A8;0.149934!10752-110D5;0.145311!10782-110G8;0.0250363!10726-110A6;0.324667!10018-101C9;0.359749!10086-102B5;0.0240548!10182-103D2;0.156932!10165-103B3;9.54424e-05!10499-107C4;0.000403581!10408-106B3;0.266157!10019-101D1;0.395711!10068-101I5;0.645174!10075-102A3;0.60574!10077-102A5;0.982916!10727-110A7;0.300748!10775-110G1;0.0543754!10412-106B7;0.150185!12231-129F8;0.195367!12232-129F9;0.667299!12233-129G1;0.518591!12234-129G2;0.455741!10414-106B9;0.265443!10170-103B8;0.398581!10183-103D3;8.44481e-05!10150-102I6;8.41061e-05!10174-103C3;0.000155786!10155-103A2;0.00049484!10038-101F2;0.00110589!10838-111E1;0.000347983!10759-110E3;0.067128!10514-107E1;0.0331864!10465-106H6;0.109764!10691-109F7;0.163006!10843-111E6;0.730549!10844-111E7;0.0111379!11747-123G1;0.000547261!11748-123G2;0.142069!11749-123G3;0.0903108!11750-123G4;0.168768!11751-123G5;0.100267!11840-124H4;0.203672!11752-123G6;0.11416!11753-123G7;0.00914535!11754-123G8;0.177504!11755-123G9;0.611724!11756-123H1;0.199877!11833-124G6;0.0538716!11760-123H5;0.00682851!11836-124G9;0.443788!11758-123H3;0.18762!11835-124G8;0.214927!11762-123H7;0.0873925!11838-124H2;0.98273!11757-123H2;0.636542!11759-123H4;0.528375!11761-123H6;0.0279877!11842-124H6;0.665411!11837-124H1;0.0245164!10568-108B1;0.0807593!13230-141I8;0.626901!13231-141I9;0.897137!10696-109G3;0.708712!10493-107B7;0.636238!10494-107B8;0.709828!10850-111F4;0.754456!10851-111F5;0.257432!10852-111F6;0.846606!10853-111F7;0.965138!10854-111F8;0.54689!10855-111F9;0.812278!10856-111G1;0.754036!10847-111F1;0.0327841!10846-111E9;0.573099!10848-111F2;0.868933!10845-111E8;0.832686!10857-111G2;0.964709!10858-111G3;0.680114!10156-103A3;0.511638!11901-125F2;0.00015912!11902-125F3;0.073714!11903-125F4;0.134553!10689-109F5;0.0847947!10648-109A9;0.786348!10784-110H1;0.546178!10744-110C6;0.996171!10772-110F7;0.076657!10474-106I6;0.999721!10600-108E6;0.258096!10684-109E9;0.704146!12226-129F3;0.848932!12227-129F4;0.975594!10508-107D4;0.00588665!10539-107G8;0.0179614!10607-108F4;0.0285994!10555-107I6;0.0247521!10774-110F9;0.0215321!10637-108I7;0.139859!10663-109C6;0.00763808!10728-110A8;0.0123854!10729-110A9;0.0268237!10430-106D7;0.38608!10730-110B1;0.758384!10813-111B3;0.000254164!10812-111B2;0.355783!10037-101F1;0.0446897!10172-103C1;0.000262053!10163-103B1;0.000186519!10076-102A4;0.000237232!10073-102A1;8.59384e-05!10036-101E9;0.000140343!10195-103E6;9.65389e-05!10277-104E7;6.92917e-05!10434-106E2;0.00948698!10550-107I1;0.756555!10545-107H5;0.915684!10544-107H4;0.971164!10704-109H2;0.860639!10510-107D6;0.296802!10558-107I9;0.0577682!10020-101D2;0.0667919!10732-110B3;0.16552!10049-101G4;0.474906!10698-109G5;0.925346!10437-106E5;0.660124!10417-106C3;0.81557!10035-101E8;0.186644!10171-103B9;0.000158107!10157-103A4;0.00017952!10034-101E7;0.000197134!10072-101I9;0.000122436!10199-103F1;8.5694e-05!10200-103F2;0.850327!10697-109G4;0.857415!10723-110A3;0.0137132!10179-103C8;0.785202!10160-103A7;6.22485e-05!10180-103C9;0.000122674!10162-103A9;0.0041658!10021-101D3;0.00524082!10840-111E3;0.697668!10706-109H4;0.700746!10033-101E6;0.529579!10032-101E5;0.000467256!10490-107B4;9.65507e-05!10439-106E7;0.699712!10022-101D4;0.416441!10176-103C5;0.199396!10469-106I1;0.000764044!10067-101I4;0.603861!10411-106B6;0.00596606!10471-106I3;0.220569!10030-101E3;0.385468!10475-106I7;0.00147026!10787-110H4;0.0540719!10477-106I9;0.547887!10695-109G2;0.0248416!11771-123I7;0.190572!11772-123I8;0.800129!11773-123I9;0.811889!10093-102C3;0.498674!10442-106F1;0.526496!10442-106F1;0.0553244!10201-103F3;0.0361854!10639-108I9;0.13502!11843-124H7;0.989903!11841-124H5;0.245322!10693-109F9;0.329036!10436-106E4;0.282741!10483-107A6;0.561626!10282-104F3;0.138285!10023-101D5;0.643969!10066-101I3;0.163644!10065-101I2;0.677507!10800-110I8;0.551464!10610-108F7;0.0889097!10841-111E4;2.74411e-05!10541-107H1;0.410885!10842-111E5;0.764823!10562-108A4;0.0145841!10024-101D6;0.0125008!10064-101I1;0.768709!10609-108F6;0.538897!10048-101G3;0.0883434!10781-110G7;0.147364!10181-103D1;0.000568253!10159-103A6;0.000242946!10056-101H2;0.00161153!10737-110B8;0.000435619!10025-101D7;0.436122!10044-101F8;0.197425!10424-106D1;0.709931!10463-106H4;0.207559!10616-108G4;0.36959!10486-107A9;0.738882!10062-101H8;0.495205!10202-103F4;0.24377!10158-103A5;0.787975!10441-106E9;0.0122109!10031-101E4;0.0141531!10063-101H9;8.00202e-05!10063-101H9;0.000117801!11763-123H8;0.257143!11765-123I1;0.374408!11768-123I4;0.716982!10807-111A6;0.562382!10790-110H7;0.580042!10798-110I6;0.197334!10786-110H3;0.682208!10591-108D6;0.792564!10593-108D8;0.656648!10590-108D5;0.477941!10026-101D8;0.872401!10096-102C6;0.858321!10168-103B6;0.22419!10154-103A1;0.00081347!10209-103G2;0.00111707!10061-101H7;0.561173!10027-101D9;0.474614!10043-101F7;0.899087!10783-110G9;0.809145!10028-101E1;0.470678!10060-101H6;0.791569!10203-103F5;0.366041!10059-101H5;0.468902!10047-101G2;0.637077!10029-101E2;0.35578!10058-101H4;0.529261!10418-106C4;0.802922!10492-107B6;0.0609154!10694-109G1;0.7954!10797-110I5;0.00470048!10057-101H3;0.896648!10100-102D1;0.946828!10055-101H1;0.352697!10204-103F6;0.0523923!10191-103E2;0.0678098!10563-108A5;0.753288
|name=CGCTCTCKCT,motif771,CNhs12318,T:1355.0(31.42%),B:17386.5(23.94%),P:1e-28
|name=CGCTCTCKCT,motif771,CNhs12318,T:1355.0(31.42%),B:17386.5(23.94%),P:1e-28
|tomtom_result=Trl#MA0205.1;1;7.93885e-05;0.0377889;0.0755778;9;CGCTCTCTCT;TTGCTCTCTC;+!IRF2#MA0051.1;4;0.0157248;7.48498;1;10;CGCTCTCTCT;GTTTTGCTTTCACTTTCC;-!YGR067C#MA0425.1;4;0.0164635;7.83661;1;10;CGCTCTCTCT;ACCCCACTTTTTTG;+
}}
}}

Latest revision as of 13:56, 7 September 2012

Full Name: CGCTCTCKCT,motif771,CNhs12318,T:1355.0(31.42%),B:17386.5(23.94%),P:1e-28

Motif matrix
POACGT
184.011086.7197.5686.72
296.20533.875768.285456.635
3172.085860.425239.83582.655
470.4677.2356.7751200.53
512.1951050.125161.245131.435
621.68128.725281.84922.755
7261.515880.75115.17597.56
8123.305153.115441.73636.85
98.131215.43597.5633.875
1014.905174.79556.911108.39

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Trl#MA0205.117.93885e-050.03778890.07557789CGCTCTCTCTTTGCTCTCTC+
IRF2#MA0051.140.01572487.48498110CGCTCTCTCTGTTTTGCTTTCACTTTCC-
YGR067C#MA0425.140.01646357.83661110CGCTCTCTCTACCCCACTTTTTTG+
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