MacroAPE 1083:LHX2 f1: Difference between revisions
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(Created page with "{{Macroape_1083
|PWM=PO;A;C;G;T!1;1.290983606557379;3.241803278688527;0.2581967213114751;2.2090163934426212!2;3.213114754098361;0.803278688524592;2.065573770491805;0.91803278...") |
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| ||
|name=LHX2_f1 | |name=LHX2_f1 | ||
|tomtom_result=CG7056#MA0183.1;-4;4.25343e-06;0.00202463;0.00167485;8;CACTTTTAATTAG;TTTAATTA;+!CG9876#MA0184.1;-6;6.02892e-06;0.00286977;0.00167485;7;CACTTTTAATTAG;TAATTAG;-!Vsx2#MA0180.1;-4;8.18506e-06;0.00389609;0.00167485;9;CACTTTTAATTAG;TTTAATTAG;+!OdsH#MA0455.1;-6;1.02467e-05;0.00487744;0.00167485;7;CACTTTTAATTAG;TAATTAG;-!OdsH#MA0455.1;-6;1.02467e-05;0.00487744;0.00167485;7;CACTTTTAATTAG;TAATTAG;-!SMP1#MA0383.1;2;1.21653e-05;0.0057907;0.00167485;13;CACTTTTAATTAG;TGCTAATTTAATTATAGGTAA;-!Pph13#MA0200.1;-6;2.53668e-05;0.0120746;0.00299343;7;CACTTTTAATTAG;TAATTAG;-!ro#MA0241.1;-6;3.79299e-05;0.0180547;0.00379625;7;CACTTTTAATTAG;TAATTAG;-!Ubx#MA0094.2;-4;4.48484e-05;0.0213478;0.00379625;8;CACTTTTAATTAG;TTTAATTA;+!Rx#MA0202.1;-6;4.59571e-05;0.0218756;0.00379625;7;CACTTTTAATTAG;TAATTAG;-!HGTX#MA0191.1;-5;0.000129103;0.0614528;0.00888701;7;CACTTTTAATTAG;TTAATTA;+!en#MA0220.1;-6;0.000129103;0.0614528;0.00888701;7;CACTTTTAATTAG;TAATTAA;-!Pdx1#MA0132.1;-7;0.000187907;0.0894437;0.010768;6;CACTTTTAATTAG;AATTAG;-!ap#MA0209.1;-6;0.000236975;0.1128;0.010768;7;CACTTTTAATTAG;TAATTAG;-!repo#MA0240.1;-5;0.000236975;0.1128;0.010768;7;CACTTTTAATTAG;TTAATTA;+!unpg#MA0251.1;-6;0.000236975;0.1128;0.010768;7;CACTTTTAATTAG;TAATTAA;-!Oct#MA0197.1;-4;0.000248529;0.1183;0.010768;8;CACTTTTAATTAG;TTTAATTA;+!exex#MA0224.1;-6;0.00027375;0.130305;0.010768;7;CACTTTTAATTAG;TAATTAC;-!exex#MA0224.1;-6;0.00027375;0.130305;0.010768;7;CACTTTTAATTAG;TAATTAC;-!hbn#MA0226.1;-5;0.00027375;0.130305;0.010768;7;CACTTTTAATTAG;TTAATTA;+!Lim3#MA0195.1;-6;0.000315436;0.150147;0.0114256;7;CACTTTTAATTAG;TAATTAA;-!inv#MA0229.1;-4;0.00032772;0.155995;0.0114256;8;CACTTTTAATTAG;TCTAATTA;+!al#MA0208.1;-5;0.000362366;0.172486;0.0114256;7;CACTTTTAATTAG;TTAATTA;-!PHDP#MA0457.1;-6;0.000362366;0.172486;0.0114256;7;CACTTTTAATTAG;TAATTAA;-!Prrx2#MA0075.1;-7;0.000415237;0.197653;0.0114256;5;CACTTTTAATTAG;AATTA;+!CG32105#MA0178.1;-5;0.0004155;0.197778;0.0114256;7;CACTTTTAATTAG;TTAATTA;+!Vsx1#MA0181.1;-6;0.0004155;0.197778;0.0114256;7;CACTTTTAATTAG;TAATTAA;-!slou#MA0245.1;-5;0.0004155;0.197778;0.0114256;7;CACTTTTAATTAG;TTAATTA;+!YOX1#MA0433.1;-5;0.000468248;0.222886;0.0115396;8;CACTTTTAATTAG;TTAATTAA;-!CG11294#MA0172.1;-5;0.000474971;0.226086;0.0115396;7;CACTTTTAATTAG;TTAATTA;+!CG15696#MA0176.1;-5;0.000474971;0.226086;0.0115396;7;CACTTTTAATTAG;TTAATTA;+!otp#MA0236.1;-5;0.000537699;0.255945;0.0126903;7;CACTTTTAATTAG;TTAATTA;+!CG32532#MA0179.1;-5;0.000604803;0.287886;0.0135025;7;CACTTTTAATTAG;TTAATTA;+!CG13424#MA0175.1;-6;0.000677228;0.322361;0.0135555;7;CACTTTTAATTAG;CAATTAA;-!ind#MA0228.1;-6;0.000677228;0.322361;0.0135555;7;CACTTTTAATTAG;TAATTAG;-!CG18599#MA0177.1;-6;0.000754869;0.359318;0.0135555;7;CACTTTTAATTAG;TAATTAA;-!Dr#MA0188.1;-6;0.000754869;0.359318;0.0135555;7;CACTTTTAATTAG;TAATTGG;-!Lim1#MA0194.1;-5;0.000754869;0.359318;0.0135555;7;CACTTTTAATTAG;TTAATTA;+!abd-A#MA0206.1;-5;0.000754869;0.359318;0.0135555;7;CACTTTTAATTAG;TTAATTA;+!zen2#MA0257.1;-5;0.000754869;0.359318;0.0135555;7;CACTTTTAATTAG;TTAATTA;+!H2.0#MA0448.1;-5;0.000754869;0.359318;0.0135555;7;CACTTTTAATTAG;TTAATTA;+!Nobox#MA0125.1;-6;0.000848274;0.403778;0.0147094;7;CACTTTTAATTAG;TAATTGGT;+!Awh#MA0167.1;-6;0.000925967;0.44076;0.0147094;7;CACTTTTAATTAG;TAATTAA;-!E5#MA0189.1;-5;0.000925967;0.44076;0.0147094;7;CACTTTTAATTAG;TTAATTA;+!NK7.1#MA0196.1;-5;0.000925967;0.44076;0.0147094;7;CACTTTTAATTAG;TTAATTG;+!lab#MA0230.1;-5;0.00102067;0.485838;0.0156132;7;CACTTTTAATTAG;TTAATTA;+!ftz#MA0225.1;-5;0.00112178;0.533968;0.016848;7;CACTTTTAATTAG;TTAATGA;+!Dll#MA0187.1;-6;0.00122991;0.585439;0.0178239;7;CACTTTTAATTAG;TAATTAC;+!ARID3A#MA0151.1;-4;0.00148315;0.705982;0.0204191;6;CACTTTTAATTAG;TTTAAT;-!unc-4#MA0250.1;-6;0.00174309;0.829713;0.0218162;7;CACTTTTAATTAG;CAATTAA;-!bsh#MA0214.1;-5;0.00189437;0.901718;0.0233556;7;CACTTTTAATTAG;TTAATTG;+!btn#MA0215.1;-5;0.00205539;0.978363;0.023581;7;CACTTTTAATTAG;TTAATGA;+!ems#MA0219.1;-6;0.00205539;0.978363;0.023581;7;CACTTTTAATTAG;TCATTAA;-!Antp#MA0166.1;-5;0.00222638;1.05975;0.0241984;7;CACTTTTAATTAG;TTAATGA;+!C15#MA0170.1;-5;0.00222638;1.05975;0.0241984;7;CACTTTTAATTAG;TTAATTA;+!lbl#MA0232.1;-6;0.00229225;1.09111;0.0245908;6;CACTTTTAATTAG;TAATTA;+!eve#MA0221.1;-6;0.0026011;1.23813;0.0265262;7;CACTTTTAATTAG;TCATTAG;-!CG4328#MA0182.1;-6;0.00350069;1.66633;0.0324912;7;CACTTTTAATTAG;CAATAAA;-!pb#MA0238.1;-5;0.00376086;1.79017;0.0337677;7;CACTTTTAATTAG;TTAATTA;+!CG34031#MA0444.1;-5;0.00432934;2.06076;0.0376443;7;CACTTTTAATTAG;TTAATTG;+!Nkx2-5#MA0063.1;-5;0.00531587;2.53035;0.0443548;7;CACTTTTAATTAG;TTAATTG;+!Hmx#MA0192.1;-5;0.00531587;2.53035;0.0443548;7;CACTTTTAATTAG;TTAATTG;+!YHP1#MA0426.1;-6;0.00569635;2.71146;0.0461316;6;CACTTTTAATTAG;CAATTA;-!CG11085#MA0171.1;-5;0.00738014;3.51294;0.0544312;7;CACTTTTAATTAG;TTAATTG;+!CG42234#MA0174.1;-5;0.00738014;3.51294;0.0544312;7;CACTTTTAATTAG;TTTATTA;+!Dfd#MA0186.1;-5;0.00738014;3.51294;0.0544312;7;CACTTTTAATTAG;TTAATGA;+!Scr#MA0203.1;-5;0.00738014;3.51294;0.0544312;7;CACTTTTAATTAG;TTAATGA;+!zen#MA0256.1;-6;0.00738014;3.51294;0.0544312;7;CACTTTTAATTAG;TCATTAG;-!tup#MA0248.1;-5;0.0083721;3.98512;0.0591086;7;CACTTTTAATTAG;TTAATTG;+!HOXA5#MA0158.1;-7;0.00882554;4.20096;0.0617819;6;CACTTTTAATTAG;AATTAGTG;-!lbe#MA0231.1;-6;0.00906123;4.31314;0.0628987;6;CACTTTTAATTAG;TAACTA;+!B-H2#MA0169.1;-5;0.00947617;4.51066;0.0646919;7;CACTTTTAATTAG;TTAATTG;+!HAP4#MA0315.1;1;0.0108826;5.18012;0.0730852;13;CACTTTTAATTAG;TCGCCTCTGATTGGT;-!MATALPHA2#MA0328.1;-2;0.0113914;5.42229;0.075278;9;CACTTTTAATTAG;CATGTAATT;+!Ubx#MA0094.2;-6;0.0119303;5.67881;0.0775977;4;CACTTTTAATTAG;TAAT;+!cad#MA0216.1;-6;0.0143649;6.83771;0.0919848;7;CACTTTTAATTAG;CAATAAA;-!Ddit3::Cebpa#MA0019.1;-1;0.0150345;7.1564;0.0955314;12;CACTTTTAATTAG;AGATGCAATCCC;+!vnd#MA0253.1;-3;0.0192524;9.16413;0.115681;9;CACTTTTAATTAG;TTTCAAGTG;+ | |||
}} | }} | ||
Latest revision as of 14:13, 7 September 2012
Full Name: LHX2_f1
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
|---|---|---|---|---|---|---|---|---|
| CG7056#MA0183.1 | -4 | 4.25343e-06 | 0.00202463 | 0.00167485 | 8 | CACTTTTAATTAG | TTTAATTA | + |
| CG9876#MA0184.1 | -6 | 6.02892e-06 | 0.00286977 | 0.00167485 | 7 | CACTTTTAATTAG | TAATTAG | - |
| Vsx2#MA0180.1 | -4 | 8.18506e-06 | 0.00389609 | 0.00167485 | 9 | CACTTTTAATTAG | TTTAATTAG | + |
| OdsH#MA0455.1 | -6 | 1.02467e-05 | 0.00487744 | 0.00167485 | 7 | CACTTTTAATTAG | TAATTAG | - |
| OdsH#MA0455.1 | -6 | 1.02467e-05 | 0.00487744 | 0.00167485 | 7 | CACTTTTAATTAG | TAATTAG | - |
| SMP1#MA0383.1 | 2 | 1.21653e-05 | 0.0057907 | 0.00167485 | 13 | CACTTTTAATTAG | TGCTAATTTAATTATAGGTAA | - |
| Pph13#MA0200.1 | -6 | 2.53668e-05 | 0.0120746 | 0.00299343 | 7 | CACTTTTAATTAG | TAATTAG | - |
| ro#MA0241.1 | -6 | 3.79299e-05 | 0.0180547 | 0.00379625 | 7 | CACTTTTAATTAG | TAATTAG | - |
| Ubx#MA0094.2 | -4 | 4.48484e-05 | 0.0213478 | 0.00379625 | 8 | CACTTTTAATTAG | TTTAATTA | + |
| Rx#MA0202.1 | -6 | 4.59571e-05 | 0.0218756 | 0.00379625 | 7 | CACTTTTAATTAG | TAATTAG | - |
| HGTX#MA0191.1 | -5 | 0.000129103 | 0.0614528 | 0.00888701 | 7 | CACTTTTAATTAG | TTAATTA | + |
| en#MA0220.1 | -6 | 0.000129103 | 0.0614528 | 0.00888701 | 7 | CACTTTTAATTAG | TAATTAA | - |
| Pdx1#MA0132.1 | -7 | 0.000187907 | 0.0894437 | 0.010768 | 6 | CACTTTTAATTAG | AATTAG | - |
| ap#MA0209.1 | -6 | 0.000236975 | 0.1128 | 0.010768 | 7 | CACTTTTAATTAG | TAATTAG | - |
| repo#MA0240.1 | -5 | 0.000236975 | 0.1128 | 0.010768 | 7 | CACTTTTAATTAG | TTAATTA | + |
| unpg#MA0251.1 | -6 | 0.000236975 | 0.1128 | 0.010768 | 7 | CACTTTTAATTAG | TAATTAA | - |
| Oct#MA0197.1 | -4 | 0.000248529 | 0.1183 | 0.010768 | 8 | CACTTTTAATTAG | TTTAATTA | + |
| exex#MA0224.1 | -6 | 0.00027375 | 0.130305 | 0.010768 | 7 | CACTTTTAATTAG | TAATTAC | - |
| exex#MA0224.1 | -6 | 0.00027375 | 0.130305 | 0.010768 | 7 | CACTTTTAATTAG | TAATTAC | - |
| hbn#MA0226.1 | -5 | 0.00027375 | 0.130305 | 0.010768 | 7 | CACTTTTAATTAG | TTAATTA | + |
| Lim3#MA0195.1 | -6 | 0.000315436 | 0.150147 | 0.0114256 | 7 | CACTTTTAATTAG | TAATTAA | - |
| inv#MA0229.1 | -4 | 0.00032772 | 0.155995 | 0.0114256 | 8 | CACTTTTAATTAG | TCTAATTA | + |
| al#MA0208.1 | -5 | 0.000362366 | 0.172486 | 0.0114256 | 7 | CACTTTTAATTAG | TTAATTA | - |
| PHDP#MA0457.1 | -6 | 0.000362366 | 0.172486 | 0.0114256 | 7 | CACTTTTAATTAG | TAATTAA | - |
| Prrx2#MA0075.1 | -7 | 0.000415237 | 0.197653 | 0.0114256 | 5 | CACTTTTAATTAG | AATTA | + |
| CG32105#MA0178.1 | -5 | 0.0004155 | 0.197778 | 0.0114256 | 7 | CACTTTTAATTAG | TTAATTA | + |
| Vsx1#MA0181.1 | -6 | 0.0004155 | 0.197778 | 0.0114256 | 7 | CACTTTTAATTAG | TAATTAA | - |
| slou#MA0245.1 | -5 | 0.0004155 | 0.197778 | 0.0114256 | 7 | CACTTTTAATTAG | TTAATTA | + |
| YOX1#MA0433.1 | -5 | 0.000468248 | 0.222886 | 0.0115396 | 8 | CACTTTTAATTAG | TTAATTAA | - |
| CG11294#MA0172.1 | -5 | 0.000474971 | 0.226086 | 0.0115396 | 7 | CACTTTTAATTAG | TTAATTA | + |
| CG15696#MA0176.1 | -5 | 0.000474971 | 0.226086 | 0.0115396 | 7 | CACTTTTAATTAG | TTAATTA | + |
| otp#MA0236.1 | -5 | 0.000537699 | 0.255945 | 0.0126903 | 7 | CACTTTTAATTAG | TTAATTA | + |
| CG32532#MA0179.1 | -5 | 0.000604803 | 0.287886 | 0.0135025 | 7 | CACTTTTAATTAG | TTAATTA | + |
| CG13424#MA0175.1 | -6 | 0.000677228 | 0.322361 | 0.0135555 | 7 | CACTTTTAATTAG | CAATTAA | - |
| ind#MA0228.1 | -6 | 0.000677228 | 0.322361 | 0.0135555 | 7 | CACTTTTAATTAG | TAATTAG | - |
| CG18599#MA0177.1 | -6 | 0.000754869 | 0.359318 | 0.0135555 | 7 | CACTTTTAATTAG | TAATTAA | - |
| Dr#MA0188.1 | -6 | 0.000754869 | 0.359318 | 0.0135555 | 7 | CACTTTTAATTAG | TAATTGG | - |
| Lim1#MA0194.1 | -5 | 0.000754869 | 0.359318 | 0.0135555 | 7 | CACTTTTAATTAG | TTAATTA | + |
| abd-A#MA0206.1 | -5 | 0.000754869 | 0.359318 | 0.0135555 | 7 | CACTTTTAATTAG | TTAATTA | + |
| zen2#MA0257.1 | -5 | 0.000754869 | 0.359318 | 0.0135555 | 7 | CACTTTTAATTAG | TTAATTA | + |
| H2.0#MA0448.1 | -5 | 0.000754869 | 0.359318 | 0.0135555 | 7 | CACTTTTAATTAG | TTAATTA | + |
| Nobox#MA0125.1 | -6 | 0.000848274 | 0.403778 | 0.0147094 | 7 | CACTTTTAATTAG | TAATTGGT | + |
| Awh#MA0167.1 | -6 | 0.000925967 | 0.44076 | 0.0147094 | 7 | CACTTTTAATTAG | TAATTAA | - |
| E5#MA0189.1 | -5 | 0.000925967 | 0.44076 | 0.0147094 | 7 | CACTTTTAATTAG | TTAATTA | + |
| NK7.1#MA0196.1 | -5 | 0.000925967 | 0.44076 | 0.0147094 | 7 | CACTTTTAATTAG | TTAATTG | + |
| lab#MA0230.1 | -5 | 0.00102067 | 0.485838 | 0.0156132 | 7 | CACTTTTAATTAG | TTAATTA | + |
| ftz#MA0225.1 | -5 | 0.00112178 | 0.533968 | 0.016848 | 7 | CACTTTTAATTAG | TTAATGA | + |
| Dll#MA0187.1 | -6 | 0.00122991 | 0.585439 | 0.0178239 | 7 | CACTTTTAATTAG | TAATTAC | + |
| ARID3A#MA0151.1 | -4 | 0.00148315 | 0.705982 | 0.0204191 | 6 | CACTTTTAATTAG | TTTAAT | - |
| unc-4#MA0250.1 | -6 | 0.00174309 | 0.829713 | 0.0218162 | 7 | CACTTTTAATTAG | CAATTAA | - |
| bsh#MA0214.1 | -5 | 0.00189437 | 0.901718 | 0.0233556 | 7 | CACTTTTAATTAG | TTAATTG | + |
| btn#MA0215.1 | -5 | 0.00205539 | 0.978363 | 0.023581 | 7 | CACTTTTAATTAG | TTAATGA | + |
| ems#MA0219.1 | -6 | 0.00205539 | 0.978363 | 0.023581 | 7 | CACTTTTAATTAG | TCATTAA | - |
| Antp#MA0166.1 | -5 | 0.00222638 | 1.05975 | 0.0241984 | 7 | CACTTTTAATTAG | TTAATGA | + |
| C15#MA0170.1 | -5 | 0.00222638 | 1.05975 | 0.0241984 | 7 | CACTTTTAATTAG | TTAATTA | + |
| lbl#MA0232.1 | -6 | 0.00229225 | 1.09111 | 0.0245908 | 6 | CACTTTTAATTAG | TAATTA | + |
| eve#MA0221.1 | -6 | 0.0026011 | 1.23813 | 0.0265262 | 7 | CACTTTTAATTAG | TCATTAG | - |
| CG4328#MA0182.1 | -6 | 0.00350069 | 1.66633 | 0.0324912 | 7 | CACTTTTAATTAG | CAATAAA | - |
| pb#MA0238.1 | -5 | 0.00376086 | 1.79017 | 0.0337677 | 7 | CACTTTTAATTAG | TTAATTA | + |
| CG34031#MA0444.1 | -5 | 0.00432934 | 2.06076 | 0.0376443 | 7 | CACTTTTAATTAG | TTAATTG | + |
| Nkx2-5#MA0063.1 | -5 | 0.00531587 | 2.53035 | 0.0443548 | 7 | CACTTTTAATTAG | TTAATTG | + |
| Hmx#MA0192.1 | -5 | 0.00531587 | 2.53035 | 0.0443548 | 7 | CACTTTTAATTAG | TTAATTG | + |
| YHP1#MA0426.1 | -6 | 0.00569635 | 2.71146 | 0.0461316 | 6 | CACTTTTAATTAG | CAATTA | - |
| CG11085#MA0171.1 | -5 | 0.00738014 | 3.51294 | 0.0544312 | 7 | CACTTTTAATTAG | TTAATTG | + |
| CG42234#MA0174.1 | -5 | 0.00738014 | 3.51294 | 0.0544312 | 7 | CACTTTTAATTAG | TTTATTA | + |
| Dfd#MA0186.1 | -5 | 0.00738014 | 3.51294 | 0.0544312 | 7 | CACTTTTAATTAG | TTAATGA | + |
| Scr#MA0203.1 | -5 | 0.00738014 | 3.51294 | 0.0544312 | 7 | CACTTTTAATTAG | TTAATGA | + |
| zen#MA0256.1 | -6 | 0.00738014 | 3.51294 | 0.0544312 | 7 | CACTTTTAATTAG | TCATTAG | - |
| tup#MA0248.1 | -5 | 0.0083721 | 3.98512 | 0.0591086 | 7 | CACTTTTAATTAG | TTAATTG | + |
| HOXA5#MA0158.1 | -7 | 0.00882554 | 4.20096 | 0.0617819 | 6 | CACTTTTAATTAG | AATTAGTG | - |
| lbe#MA0231.1 | -6 | 0.00906123 | 4.31314 | 0.0628987 | 6 | CACTTTTAATTAG | TAACTA | + |
| B-H2#MA0169.1 | -5 | 0.00947617 | 4.51066 | 0.0646919 | 7 | CACTTTTAATTAG | TTAATTG | + |
| HAP4#MA0315.1 | 1 | 0.0108826 | 5.18012 | 0.0730852 | 13 | CACTTTTAATTAG | TCGCCTCTGATTGGT | - |
| MATALPHA2#MA0328.1 | -2 | 0.0113914 | 5.42229 | 0.075278 | 9 | CACTTTTAATTAG | CATGTAATT | + |
| Ubx#MA0094.2 | -6 | 0.0119303 | 5.67881 | 0.0775977 | 4 | CACTTTTAATTAG | TAAT | + |
| cad#MA0216.1 | -6 | 0.0143649 | 6.83771 | 0.0919848 | 7 | CACTTTTAATTAG | CAATAAA | - |
| Ddit3::Cebpa#MA0019.1 | -1 | 0.0150345 | 7.1564 | 0.0955314 | 12 | CACTTTTAATTAG | AGATGCAATCCC | + |
| vnd#MA0253.1 | -3 | 0.0192524 | 9.16413 | 0.115681 | 9 | CACTTTTAATTAG | TTTCAAGTG | + |
