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MacroAPE 1083:AGAGAAAGAG,motif627: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1174.993;1.307;129.393;1.307!2;196.05;1.307;982.864;126.779!3;1052.135;28.754;121.551;104.56!4;171.217;30.061;1104.415;1.307!5;1134.476;15.6...")
 
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C9;0.762577!10788-110H5;0.859559!10792-110H9;0.67782!10765-110E9;0.677676!10829-111D1;0.450396!10830-111D2;0.806006!10831-111D3;0.43972!10832-111D4;0.933358!10833-111D5;0.661977!10764-110E8;0.906409!10770-110F5;0.801205!10399-106A3;0.846745!10400-106A4;0.818316!10405-106A9;0.803327!10834-111D6;0.898642!10835-111D7;0.664657!10836-111D8;0.0965635!10837-111D9;0.653367!10699-109G6;0.951599!10802-111A1;0.890554!10796-110I4;0.871681!10010-101C1;0.195632!10810-111A9;0.124533!10421-106C7;0.229634!10708-109H6;0.941423!12235-129G3;0.0978788!12236-129G4;0.367385!12237-129G5;0.737205!10167-103B5;0.663676!10151-102I7;0.766089!10428-106D5;0.905784!10795-110I3;0.904125!10805-111A4;0.819424!10052-101G7;0.751412!10189-103D9;0.628233!10589-108D4;0.125766!10425-106D2;0.354448!10427-106D4;0.480918!10702-109G9;0.952689!10432-106D9;0.340867!10496-107C1;0.324649!10718-109I7;0.00864415!10011-101C2;0.938384!10053-101G8;0.379471!10686-109F2;0.458797!10084-102B3;0.680554!10012-101C3;0.956674!10085-102B4;0.910572!10482-107A5;0.986434!10419-106C5;0.674145!10080-102A8;0.553797!10760-110E4;0.0229347!10709-109H7;0.00944399!10710-109H8;0.219711!10703-109H1;0.32558!10719-109I8;0.258949!10642-109A3;0.444981!10177-103C6;0.340279!10164-103B2;0.902887!10173-103C2;0.905147!10166-103B4;0.699721!10083-102B2;0.808682!10188-103D8;0.721841!10552-107I3;0.969598!10553-107I4;0.00704168!10013-101C4;0.336328!10536-107G5;0.149916!10618-108G6;0.185506!10423-106C9;0.952597!10785-110H2;0.881846!12238-129G6;0.846288!12239-129G7;0.0135932!12240-129G8;0.687354!10416-106C2;0.00963539!10801-110I9;0.971398!10766-110F1;0.877153!10824-111C5;0.847001!10825-111C6;0.289224!10826-111C7;0.483079!10454-106G4;0.457776!10409-106B4;0.0820791!10638-108I8;0.9899!10636-108I6;0.161242!10513-107D9;0.788669!10420-106C6;0.356931!10082-102B1;0.336107!10014-101C5;0.0470584!10070-101I7;0.0129161!10452-106G2;0.209487!10453-106G3;0.0649021!10449-106F8;0.0528613!10042-101F6;0.067913!10069-101I6;0.557758!10193-103E4;0.148234!10631-108I1;0.996147!10438-106E6;0.432642!10488-107B2;0.777177!10196-103E7;0.163682!10071-101I8;0.549775!10071-101I8;0.00734734!10041-101F5;0.836802!10451-106G1;0.156618!10450-106F9;0.261222!10604-108F1;0.436376!10605-108F2;0.402409!10606-108F3;0.562585!10603-108E9;0.620791!10497-107C2;0.120511!10448-106F7;0.279187!10643-109A4;0.220822!10426-106D3;0.330738!10431-106D8;0.413661!10197-103E8;0.170009!10443-106F2;0.107737!10815-111B5;0.148199!10816-111B6;0.0221769!10817-111B7;0.040472!10015-101C6;0.0126014!10410-106B5;0.0737399!10054-101G9;0.67961!10758-110E2;0.94757!10711-109H9;0.161211!10040-101F4;0.0496836!10470-106I2;0.934643!10415-106C1;0.346686!10198-103E9;0.306792!10614-108G2;0.004786!10612-108F9;0.279793!10549-107H9;0.310344!10615-108G3;0.306283!10487-107B1;0.549222!10433-106E1;0.0203578!10688-109F4;0.745983!10444-106F3;0.455769!10444-106F3;0.287381!10485-107A8;0.253635!10413-106B8;0.402249!10175-103C4;0.205324!10161-103A8;0.791698!12131-128D7;0.84096!10624-108H3;0.693255!10712-109I1;0.225168!10205-103F7;0.962799!10206-103F8;0.260409!10207-103F9;0.626277!10050-101G5;0.2618!10051-101G6;0.351848!10016-101C7;0.304942!10046-101G1;0.210389!10778-110G4;0.0697575!10633-108I3;0.436276!10818-111B8;0.427295!10819-111B9;0.851071!10820-111C1;0.867039!10484-107A7;0.825472!10808-111A7;0.340557!10169-103B7;0.967675!10153-102I9;0.916608!13425-144D5;0.828867!13433-144E4;0.738346!13437-144E8;0.673357!11904-125F5;0.560005!11905-125F6;0.914884!10039-101F3;0.895257!10791-110H8;0.986565!10017-101C8;0.341804!10045-101F9;0.0667375!10509-107D5;0.0405431!10839-111E2;0.0328103!10692-109F8;0.448492!10079-102A7;0.444517!10078-102A6;0.117027!10721-110A1;0.214996!10569-108B2;0.379128!10570-108B3;0.387742!10571-108B4;0.367277!10647-109A8;0.307109!10752-110D5;0.320157!10782-110G8;0.763828!10726-110A6;0.700546!10018-101C9;0.942372!10086-102B5;0.365382!10182-103D2;0.0928805!10165-103B3;0.980125!10499-107C4;0.980406!10408-106B3;0.0770677!10019-101D1;0.442857!10068-101I5;0.102435!10075-102A3;0.0449203!10077-102A5;0.0545233!10727-110A7;0.238811!10775-110G1;0.785523!10412-106B7;0.948467!12231-129F8;0.713232!12232-129F9;0.431635!12233-129G1;0.168368!12234-129G2;0.48665!10414-106B9;0.740175!10170-103B8;0.453653!10183-103D3;0.639304!10150-102I6;0.756587!10174-103C3;0.880526!10155-103A2;0.782424!10038-101F2;0.810764!10838-111E1;0.65539!10759-110E3;0.786318!10514-107E1;0.114176!10465-106H6;0.33821!10691-109F7;0.184934!10843-111E6;0.5257!10844-111E7;0.287236!11747-123G1;0.287848!11748-123G2;0.0890945!11749-123G3;0.163629!11750-123G4;0.494145!11751-123G5;0.25508!11840-124H4;0.812121!11752-123G6;0.924194!11753-123G7;0.229283!11754-123G8;0.306864!11755-123G9;0.117469!11756-123H1;0.126119!11833-124G6;0.318937!11760-123H5;0.830959!11836-124G9;0.214183!11758-123H3;0.438518!11835-124G8;0.117404!11762-123H7;0.452563!11838-124H2;0.184022!11757-123H2;0.25594!11759-123H4;0.0569597!11761-123H6;0.120706!11842-124H6;0.217626!11837-124H1;0.467607!10568-108B1;0.412193!13230-141I8;0.500502!13231-141I9;0.596679!10696-109G3;0.597317!10493-107B7;0.182927!10494-107B8;0.321932!10850-111F4;0.0521532!10851-111F5;0.155472!10852-111F6;0.0174541!10853-111F7;0.105357!10854-111F8;0.137447!10855-111F9;0.455789!10856-111G1;0.00744353!10847-111F1;0.166721!10846-111E9;0.148443!10848-111F2;0.00585341!10845-111E8;0.214418!10857-111G2;0.203866!10858-111G3;0.184323!10156-103A3;0.313078!11901-125F2;0.923803!11902-125F3;0.846306!11903-125F4;0.881221!10689-109F5;0.829665!10648-109A9;0.0021795!10784-110H1;0.0974567!10744-110C6;0.0757016!10772-110F7;0.979646!10474-106I6;0.771213!10600-108E6;0.600489!10684-109E9;0.849263!12226-129F3;0.0116118!12227-129F4;0.11083!10508-107D4;0.86735!10539-107G8;0.695761!10607-108F4;0.54479!10555-107I6;0.452935!10774-110F9;0.653805!10637-108I7;0.803882!10663-109C6;0.956284!10728-110A8;0.946051!10729-110A9;0.542896!10430-106D7;0.583625!10730-110B1;0.964122!10813-111B3;0.0363742!10812-111B2;0.622635!10037-101F1;0.508804!10172-103C1;0.958005!10163-103B1;0.693677!10076-102A4;0.964037!10073-102A1;0.908735!10036-101E9;0.842131!10195-103E6;0.974394!10277-104E7;0.8715!10434-106E2;0.782393!10550-107I1;0.454341!10545-107H5;0.530379!10544-107H4;0.341868!10704-109H2;0.202878!10510-107D6;0.623799!10558-107I9;0.462953!10020-101D2;0.445115!10732-110B3;0.0411023!10049-101G4;0.354947!10698-109G5;0.918413!10437-106E5;0.799871!10417-106C3;0.344646!10035-101E8;0.912872!10171-103B9;0.908008!10157-103A4;0.673448!10034-101E7;0.871162!10072-101I9;0.949926!10199-103F1;0.881577!10200-103F2;0.549195!10697-109G4;0.293241!10723-110A3;0.800577!10179-103C8;0.450373!10160-103A7;0.926111!10180-103C9;0.958515!10162-103A9;0.92941!10021-101D3;0.945656!10840-111E3;0.0547417!10706-109H4;0.937091!10033-101E6;0.106578!10032-101E5;0.823997!10490-107B4;0.938225!10439-106E7;0.00780157!10022-101D4;0.302124!10176-103C5;0.16416!10469-106I1;0.724833!10067-101I4;0.535238!10411-106B6;0.620934!10471-106I3;0.437192!10030-101E3;0.0850711!10475-106I7;0.371834!10787-110H4;0.878575!10477-106I9;0.256206!10695-109G2;0.947832!11771-123I7;0.554494!11772-123I8;0.764045!11773-123I9;0.682915!10093-102C3;0.943309!10442-106F1;0.369379!10442-106F1;0.131317!10201-103F3;0.229959!10639-108I9;0.633976!11843-124H7;0.565649!11841-124H5;0.00313879!10693-109F9;0.0353107!10436-106E4;0.26776!10483-107A6;0.417354!10282-104F3;0.563375!10023-101D5;0.695793!10066-101I3;0.205596!10065-101I2;0.145279!10800-110I8;0.196655!10610-108F7;0.304486!10841-111E4;0.806595!10541-107H1;0.295324!10842-111E5;0.597803!10562-108A4;0.83503!10024-101D6;0.337442!10064-101I1;0.0138553!10609-108F6;0.0345659!10048-101G3;0.330451!10781-110G7;0.822888!10181-103D1;0.212673!10159-103A6;0.957455!10056-101H2;0.775589!10737-110B8;0.905246!10025-101D7;0.267562!10044-101F8;0.15414!10424-106D1;0.0303688!10463-106H4;0.952022!10616-108G4;0.468929!10486-107A9;0.630886!10062-101H8;0.130455!10202-103F4;0.00219761!10158-103A5;0.136232!10441-106E9;0.59696!10031-101E4;0.539595!10063-101H9;0.918714!10063-101H9;0.825195!11763-123H8;0.0667184!11765-123I1;0.504406!11768-123I4;0.777961!10807-111A6;0.34092!10790-110H7;0.33082!10798-110I6;0.293723!10786-110H3;0.113921!10591-108D6;0.245907!10593-108D8;0.426566!10590-108D5;0.534445!10026-101D8;0.207325!10096-102C6;0.128634!10168-103B6;0.968868!10154-103A1;0.945733!10209-103G2;0.828731!10061-101H7;0.105404!10027-101D9;0.317625!10043-101F7;0.394146!10783-110G9;0.108435!10028-101E1;0.0266114!10060-101H6;0.215059!10203-103F5;0.218438!10059-101H5;0.364929!10047-101G2;0.307708!10029-101E2;0.0772768!10058-101H4;0.0401756!10418-106C4;0.246013!10492-107B6;0.831125!10694-109G1;0.157499!10797-110I5;0.78747!10057-101H3;0.89939!10100-102D1;0.677289!10055-101H1;0.0832477!10204-103F6;0.561379!10191-103E2;0.15934!10563-108A5;0.0796179
|name=AGAGAAAGAG,motif627,CNhs13800,T:1307.0(31.40%),B:16632.6(23.59%),P:1e-30
|name=AGAGAAAGAG,motif627,CNhs13800,T:1307.0(31.40%),B:16632.6(23.59%),P:1e-30
|tomtom_result=CUP2#MA0287.1;1;0.00464199;2.20959;1;10;AGAGAAAGAG;CAGCAAAAATG;+!Trl#MA0205.1;1;0.0046739;2.22478;1;9;AGAGAAAGAG;GAGAGAGCAA;-!Klf4#MA0039.1;1;0.00589381;2.80545;1;9;AGAGAAAGAG;TAAAGGAAGG;+!SPIB#MA0081.1;0;0.0101934;4.85206;1;7;AGAGAAAGAG;AGAGGAA;+!Spz1#MA0111.1;0;0.0161544;7.68948;1;10;AGAGAAAGAG;AGGGTAACAGC;+!IRF2#MA0051.1;4;0.0177057;8.42793;1;10;AGAGAAAGAG;GGAAAGCGAAACCAAAAC;+!AZF1#MA0277.1;2;0.0178534;8.49822;1;7;AGAGAAAGAG;AAAAAGAAA;+!GABPA#MA0062.1;0;0.0181425;8.63585;1;10;AGAGAAAGAG;ACCGGAAGAG;+
}}
}}

Latest revision as of 14:15, 7 September 2012

Full Name: AGAGAAAGAG,motif627,CNhs13800,T:1307.0(31.40%),B:16632.6(23.59%),P:1e-30

Motif matrix
POACGT
11174.9931.307129.3931.307
2196.051.307982.864126.779
31052.13528.754121.551104.56
4171.21730.0611104.4151.307
51134.47615.684155.5331.307
61080.889223.4971.3071.307
71193.29186.26226.141.307
8228.725167.296890.06720.912
91066.51245.745137.23557.508
10309.759173.831822.1031.307

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CUP2#MA0287.110.004641992.20959110AGAGAAAGAGCAGCAAAAATG+
Trl#MA0205.110.00467392.2247819AGAGAAAGAGGAGAGAGCAA-
Klf4#MA0039.110.005893812.8054519AGAGAAAGAGTAAAGGAAGG+
SPIB#MA0081.100.01019344.8520617AGAGAAAGAGAGAGGAA+
Spz1#MA0111.100.01615447.68948110AGAGAAAGAGAGGGTAACAGC+
IRF2#MA0051.140.01770578.42793110AGAGAAAGAGGGAAAGCGAAACCAAAAC+
AZF1#MA0277.120.01785348.4982217AGAGAAAGAGAAAAAGAAA+
GABPA#MA0062.100.01814258.63585110AGAGAAAGAGACCGGAAGAG+
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