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MacroAPE 1083:CNhs11276 bl f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;741.3131992596255;610.6503316037455;519.3892977505835;933.3424212699254!2;577.8687011507162;544.785820517409;174.956850527705;1507.083877688...")
 
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;0.786849!10789-110H6;0.0583021!10828-111C9;0.271513!10788-110H5;0.122855!10792-110H9;0.446029!10765-110E9;0.280955!10829-111D1;0.0313983!10830-111D2;0.0920593!10831-111D3;0.149257!10832-111D4;0.121317!10833-111D5;0.101102!10764-110E8;0.0817339!10770-110F5;0.179081!10399-106A3;0.353862!10400-106A4;0.265425!10405-106A9;0.299302!10834-111D6;0.306301!10835-111D7;0.0667771!10836-111D8;0.261267!10837-111D9;0.0379963!10699-109G6;0.0180061!10802-111A1;0.316734!10796-110I4;0.0731369!10010-101C1;0.965796!10810-111A9;0.59773!10421-106C7;0.880125!10708-109H6;0.676027!12235-129G3;0.168273!12236-129G4;0.214475!12237-129G5;0.665781!10167-103B5;0.013971!10151-102I7;0.800605!10428-106D5;0.730776!10795-110I3;0.645406!10805-111A4;0.984555!10052-101G7;0.775255!10189-103D9;0.624002!10589-108D4;0.263609!10425-106D2;0.879055!10427-106D4;0.429592!10702-109G9;0.848638!10432-106D9;0.466161!10496-107C1;0.593968!10718-109I7;0.11586!10011-101C2;0.714018!10053-101G8;0.652218!10686-109F2;0.237075!10084-102B3;0.917737!10012-101C3;0.484532!10085-102B4;0.796605!10482-107A5;0.566122!10419-106C5;0.980942!10080-102A8;0.380964!10760-110E4;0.392079!10709-109H7;0.379669!10710-109H8;0.384116!10703-109H1;0.920832!10719-109I8;0.84734!10642-109A3;0.43306!10177-103C6;0.196782!10164-103B2;0.870651!10173-103C2;0.252514!10166-103B4;0.489471!10083-102B2;0.307974!10188-103D8;0.275533!10552-107I3;0.779339!10553-107I4;0.174121!10013-101C4;0.486495!10536-107G5;0.746517!10618-108G6;0.223436!10423-106C9;0.0990566!10785-110H2;0.768063!12238-129G6;0.988666!12239-129G7;0.926743!12240-129G8;0.176089!10416-106C2;0.596269!10801-110I9;0.746489!10766-110F1;0.183543!10824-111C5;0.0161659!10825-111C6;0.0332408!10826-111C7;0.0265367!10454-106G4;0.0207571!10409-106B4;0.269581!10638-108I8;0.069452!10636-108I6;0.689829!10513-107D9;0.897679!10420-106C6;0.474958!10082-102B1;0.901005!10014-101C5;0.489055!10070-101I7;0.2527!10452-106G2;0.0847662!10453-106G3;0.323716!10449-106F8;0.268407!10042-101F6;0.322774!10069-101I6;0.689525!10193-103E4;0.39167!10631-108I1;0.349069!10438-106E6;0.685719!10488-107B2;0.394897!10196-103E7;0.716883!10071-101I8;0.827138!10071-101I8;0.0526978!10041-101F5;0.444174!10451-106G1;0.73856!10450-106F9;0.60139!10604-108F1;0.161323!10605-108F2;0.47492!10606-108F3;0.263633!10603-108E9;0.434551!10497-107C2;0.231667!10448-106F7;0.740064!10643-109A4;0.784522!10426-106D3;0.777684!10431-106D8;0.66951!10197-103E8;0.604398!10443-106F2;0.82658!10815-111B5;0.168111!10816-111B6;0.0175228!10817-111B7;0.0210745!10015-101C6;0.020012!10410-106B5;0.818777!10054-101G9;0.157041!10758-110E2;0.752813!10711-109H9;0.0959668!10040-101F4;0.131949!10470-106I2;0.604416!10415-106C1;0.78791!10198-103E9;0.568617!10614-108G2;0.692341!10612-108F9;0.693302!10549-107H9;0.223859!10615-108G3;0.19692!10487-107B1;0.762618!10433-106E1;0.614782!10688-109F4;0.641215!10444-106F3;0.410676!10444-106F3;0.976193!10485-107A8;0.991125!10413-106B8;0.881172!10175-103C4;0.742702!10161-103A8;0.669821!12131-128D7;0.528372!10624-108H3;0.770925!10712-109I1;0.323695!10205-103F7;0.386658!10206-103F8;0.755701!10207-103F9;0.616152!10050-101G5;0.961721!10051-101G6;0.873913!10016-101C7;0.708337!10046-101G1;0.814914!10778-110G4;0.855053!10633-108I3;0.428909!10818-111B8;0.766241!10819-111B9;0.61358!10820-111C1;0.694139!10484-107A7;0.704625!10808-111A7;0.648318!10169-103B7;0.265747!10153-102I9;0.931506!13425-144D5;0.624344!13433-144E4;0.660956!13437-144E8;0.498484!11904-125F5;0.451851!11905-125F6;0.836538!10039-101F3;0.779255!10791-110H8;0.635608!10017-101C8;0.515121!10045-101F9;0.333709!10509-107D5;0.140469!10839-111E2;0.0131796!10692-109F8;0.64459!10079-102A7;0.195814!10078-102A6;0.9465!10721-110A1;0.7545!10569-108B2;0.867596!10570-108B3;0.685553!10571-108B4;0.58056!10647-109A8;0.11774!10752-110D5;0.520165!10782-110G8;0.136372!10726-110A6;0.740426!10018-101C9;0.0696387!10086-102B5;0.512863!10182-103D2;0.0173441!10165-103B3;0.918648!10499-107C4;0.751357!10408-106B3;0.146658!10019-101D1;0.628869!10068-101I5;0.665496!10075-102A3;0.474128!10077-102A5;0.416108!10727-110A7;0.936224!10775-110G1;0.819258!10412-106B7;0.896615!12231-129F8;0.828599!12232-129F9;0.436082!12233-129G1;0.668192!12234-129G2;0.490643!10414-106B9;0.291107!10170-103B8;0.96985!10183-103D3;0.913327!10150-102I6;0.971335!10174-103C3;0.697546!10155-103A2;0.76112!10038-101F2;0.53478!10838-111E1;0.915843!10759-110E3;0.879816!10514-107E1;0.235063!10465-106H6;0.221246!10691-109F7;0.594278!10843-111E6;0.320008!10844-111E7;0.414902!11747-123G1;0.075849!11748-123G2;0.487071!11749-123G3;0.897848!11750-123G4;0.9308!11751-123G5;0.983482!11840-124H4;0.237609!11752-123G6;0.510432!11753-123G7;0.207586!11754-123G8;0.667127!11755-123G9;0.912255!11756-123H1;0.308778!11833-124G6;0.154005!11760-123H5;0.995469!11836-124G9;0.18505!11758-123H3;0.17644!11835-124G8;0.422695!11762-123H7;0.0500157!11838-124H2;0.667499!11757-123H2;0.714541!11759-123H4;0.151773!11761-123H6;0.0243915!11842-124H6;0.458139!11837-124H1;0.658801!10568-108B1;0.0359409!13230-141I8;0.329473!13231-141I9;0.639449!10696-109G3;0.929431!10493-107B7;0.634923!10494-107B8;0.0817371!10850-111F4;0.887079!10851-111F5;0.596305!10852-111F6;0.751983!10853-111F7;0.439683!10854-111F8;0.999981!10855-111F9;0.787673!10856-111G1;0.959454!10847-111F1;0.0373924!10846-111E9;0.102349!10848-111F2;0.300617!10845-111E8;0.354104!10857-111G2;0.543774!10858-111G3;0.342453!10156-103A3;0.393292!11901-125F2;0.713091!11902-125F3;0.544986!11903-125F4;0.257655!10689-109F5;0.242474!10648-109A9;0.990945!10784-110H1;0.101019!10744-110C6;0.994953!10772-110F7;0.698859!10474-106I6;0.193107!10600-108E6;0.477116!10684-109E9;0.642277!12226-129F3;0.201565!12227-129F4;0.0644638!10508-107D4;0.847499!10539-107G8;0.729877!10607-108F4;0.902654!10555-107I6;0.618575!10774-110F9;0.062803!10637-108I7;0.293513!10663-109C6;0.315097!10728-110A8;0.981355!10729-110A9;0.726793!10430-106D7;0.906351!10730-110B1;0.794074!10813-111B3;0.883389!10812-111B2;0.802505!10037-101F1;0.309241!10172-103C1;0.542772!10163-103B1;0.695813!10076-102A4;0.644601!10073-102A1;0.610868!10036-101E9;0.607684!10195-103E6;0.48374!10277-104E7;0.721249!10434-106E2;0.138216!10550-107I1;0.799856!10545-107H5;0.949607!10544-107H4;0.706674!10704-109H2;0.809583!10510-107D6;0.550963!10558-107I9;0.0320291!10020-101D2;0.389609!10732-110B3;0.544746!10049-101G4;0.0568449!10698-109G5;0.204247!10437-106E5;0.751627!10417-106C3;0.127271!10035-101E8;0.496435!10171-103B9;0.609123!10157-103A4;0.920349!10034-101E7;0.632378!10072-101I9;0.526701!10199-103F1;0.617689!10200-103F2;0.141703!10697-109G4;0.411022!10723-110A3;0.885519!10179-103C8;0.1724!10160-103A7;0.916457!10180-103C9;0.834324!10162-103A9;0.175799!10021-101D3;0.159474!10840-111E3;0.268122!10706-109H4;0.868761!10033-101E6;0.666202!10032-101E5;0.485644!10490-107B4;0.532483!10439-106E7;0.117261!10022-101D4;0.123848!10176-103C5;0.708071!10469-106I1;0.50485!10067-101I4;0.455846!10411-106B6;0.0429941!10471-106I3;0.948674!10030-101E3;0.875595!10475-106I7;0.941483!10787-110H4;0.554041!10477-106I9;0.348091!10695-109G2;0.0073063!11771-123I7;0.56444!11772-123I8;0.490744!11773-123I9;0.503277!10093-102C3;0.340865!10442-106F1;0.0192286!10442-106F1;0.00406839!10201-103F3;0.0125305!10639-108I9;0.689064!11843-124H7;0.796245!11841-124H5;0.490603!10693-109F9;0.952571!10436-106E4;0.47705!10483-107A6;0.763442!10282-104F3;0.883109!10023-101D5;0.293721!10066-101I3;0.297586!10065-101I2;0.956235!10800-110I8;0.548984!10610-108F7;0.225388!10841-111E4;0.764884!10541-107H1;0.0634129!10842-111E5;0.152085!10562-108A4;0.895463!10024-101D6;0.857959!10064-101I1;0.166854!10609-108F6;0.0144052!10048-101G3;0.369631!10781-110G7;0.557425!10181-103D1;0.943929!10159-103A6;0.930885!10056-101H2;0.51316!10737-110B8;0.570838!10025-101D7;0.396711!10044-101F8;0.308279!10424-106D1;0.0280576!10463-106H4;0.779676!10616-108G4;0.381409!10486-107A9;0.267889!10062-101H8;0.191197!10202-103F4;0.176151!10158-103A5;0.0394648!10441-106E9;0.433022!10031-101E4;0.610965!10063-101H9;0.530691!10063-101H9;0.47996!11763-123H8;0.0188174!11765-123I1;0.868692!11768-123I4;0.544297!10807-111A6;0.842816!10790-110H7;0.622622!10798-110I6;0.747772!10786-110H3;0.0613561!10591-108D6;0.540511!10593-108D8;0.665374!10590-108D5;0.919947!10026-101D8;0.500018!10096-102C6;0.433335!10168-103B6;0.184769!10154-103A1;0.685561!10209-103G2;0.512818!10061-101H7;0.365061!10027-101D9;0.329602!10043-101F7;0.621755!10783-110G9;0.200403!10028-101E1;0.735832!10060-101H6;0.0211551!10203-103F5;0.178781!10059-101H5;0.676072!10047-101G2;0.611532!10029-101E2;0.952474!10058-101H4;0.16296!10418-106C4;0.486554!10492-107B6;0.254792!10694-109G1;0.295044!10797-110I5;0.222914!10057-101H3;0.380256!10100-102D1;0.632319!10055-101H1;0.77148!10204-103F6;0.188421!10191-103E2;0.902626!10563-108A5;0.668166
|name=CNhs11276_bl_f2
|name=CNhs11276_bl_f2
|tomtom_result=SMP1#MA0383.1;6;0.00315204;1.50037;0.84919;12;TTTTTAAAATCA;TTACCTATAATTAAATTAGCA;+!RLM1#MA0369.1;7;0.00349818;1.66514;0.84919;11;TTTTTAAAATCA;GAATCTATTTATAGAACT;-!SPT23#MA0388.1;-5;0.00417999;1.98967;0.84919;7;TTTTTAAAATCA;GAAATCAA;+!NHP6B#MA0346.1;4;0.00426791;2.03153;0.84919;12;TTTTTAAAATCA;TCATATTATATATAAATAAA;-!TBP#MA0108.2;-1;0.00603933;2.87472;0.84919;11;TTTTTAAAATCA;GTATAAAAGGCGGGG;+!TBP#MA0108.2;-1;0.00603933;2.87472;0.84919;11;TTTTTAAAATCA;GTATAAAAGGCGGGG;+!br_Z4#MA0013.1;-1;0.00624404;2.97217;0.84919;11;TTTTTAAAATCA;TAGTAAACAAA;+!NHP6A#MA0345.1;6;0.0096712;4.60349;1;12;TTTTTAAAATCA;ATGACCTATATATAAAAATGA;+!Abd-B#MA0165.1;-1;0.0131018;6.23647;1;7;TTTTTAAAATCA;TCATAAA;-!cad#MA0216.1;-1;0.0131018;6.23647;1;7;TTTTTAAAATCA;CAATAAA;-
}}
}}

Latest revision as of 14:20, 7 September 2012

Full Name: CNhs11276_bl_f2

Motif matrix
POACGT
1741.3131992596255610.6503316037455519.3892977505835933.3424212699254
2577.8687011507162544.785820517409174.9568505277051507.0838776880496
31000.5871450045423210.97492667350963314.311316888221651278.8218613176075
41140.347713814412486.49059918275198298.82796255785311279.0289743288638
511.271091571074704450.8727743785717716.87583528031681625.6755486539219
62786.803555164982814.3451871507813241.28431919506270292.2621883730567274
72785.54216392883567.444735835469567.7332069368752113.9751431827039987
82758.24652366547430.3934521098968876730.1273884009400815.927885707572845
92138.2010260988345277.35772513208144134.5178016324299254.61869702053556
10462.59164684110686928.5368052323466246.851201818035071166.7155959923919
11798.3207461640821160.6637710707096633.4855844329043212.22514821618518
121455.3323518477657393.37223524354573449.4394609934811506.5512017990893

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SMP1#MA0383.160.003152041.500370.8491912TTTTTAAAATCATTACCTATAATTAAATTAGCA+
RLM1#MA0369.170.003498181.665140.8491911TTTTTAAAATCAGAATCTATTTATAGAACT-
SPT23#MA0388.1-50.004179991.989670.849197TTTTTAAAATCAGAAATCAA+
NHP6B#MA0346.140.004267912.031530.8491912TTTTTAAAATCATCATATTATATATAAATAAA-
TBP#MA0108.2-10.006039332.874720.8491911TTTTTAAAATCAGTATAAAAGGCGGGG+
TBP#MA0108.2-10.006039332.874720.8491911TTTTTAAAATCAGTATAAAAGGCGGGG+
br_Z4#MA0013.1-10.006244042.972170.8491911TTTTTAAAATCATAGTAAACAAA+
NHP6A#MA0345.160.00967124.60349112TTTTTAAAATCAATGACCTATATATAAAAATGA+
Abd-B#MA0165.1-10.01310186.2364717TTTTTAAAATCATCATAAA-
cad#MA0216.1-10.01310186.2364717TTTTTAAAATCACAATAAA-
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