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MacroAPE 1083:TTHCTVTW,motif188: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.766;88.3;132.45;1543.484!2;1.766;1.766;1.766;1760.702!3;656.952;445.032;118.322;545.694!4;363.796;932.448;84.768;384.988!5;434.436;256.07;...")
 
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118A1;0.526567!11441-118I1;0.336!10007-101B4;0.681524!11520-119H8;0.520171!11600-120H7;0.749736!11681-122H7;0.698938!11216-116B1;0.733699!12179-129A1;0.649834!12180-129A2;7.58544e-05!12181-129A3;4.49868e-05!12176-128I7;9.33309e-05!12177-128I8;8.65316e-05!12182-129A4;0.000158579!12183-129A5;3.3458e-05!12184-129A6;4.30942e-05!10809-111A8;0.000104962!10597-108E3;5.05703e-05!10717-109I6;0.00272962!10455-106G5;0.242887!10534-107G3;0.00544635!10429-106D6;0.353462!10464-106H5;0.0560794!10827-111C8;0.166259!10789-110H6;0.000880317!10828-111C9;0.00045652!10788-110H5;0.000270834!10792-110H9;0.0452521!10765-110E9;0.000129644!10829-111D1;0.102115!10830-111D2;0.0653864!10831-111D3;0.0118317!10832-111D4;0.00476699!10833-111D5;0.00239672!10764-110E8;0.00504262!10770-110F5;0.00255061!10399-106A3;0.00198325!10400-106A4;0.0534051!10405-106A9;0.0846079!10834-111D6;0.0730473!10835-111D7;0.0558159!10836-111D8;0.956649!10837-111D9;0.193672!10699-109G6;0.00644209!10802-111A1;0.00218836!10796-110I4;0.0152524!10010-101C1;0.377514!10810-111A9;0.826278!10421-106C7;0.0191985!10708-109H6;0.0626374!12235-129G3;8.45687e-06!12236-129G4;0.368786!12237-129G5;0.346788!10167-103B5;0.292727!10151-102I7;0.310069!10428-106D5;0.595341!10795-110I3;0.853645!10805-111A4;0.317667!10052-101G7;0.00325536!10189-103D9;0.631621!10589-108D4;0.066121!10425-106D2;0.367444!10427-106D4;0.0279399!10702-109G9;0.000344787!10432-106D9;0.0358821!10496-107C1;0.195961!10718-109I7;0.61736!10011-101C2;0.0144233!10053-101G8;0.935417!10686-109F2;5.45099e-05!10084-102B3;0.297474!10012-101C3;0.2349!10085-102B4;0.332003!10482-107A5;0.160069!10419-106C5;0.144151!10080-102A8;0.603099!10760-110E4;0.917126!10709-109H7;0.323327!10710-109H8;0.658593!10703-109H1;0.195944!10719-109I8;0.0100343!10642-109A3;0.169038!10177-103C6;0.00411518!10164-103B2;0.438176!10173-103C2;0.583869!10166-103B4;0.167948!10083-102B2;0.374676!10188-103D8;0.119178!10552-107I3;0.138955!10553-107I4;0.0113882!10013-101C4;0.0401119!10536-107G5;0.55553!10618-108G6;0.241893!10423-106C9;0.636559!10785-110H2;0.88242!12238-129G6;0.231976!12239-129G7;0.781281!12240-129G8;0.229297!10416-106C2;0.0997179!10801-110I9;0.0364401!10766-110F1;0.0162418!10824-111C5;0.000108245!10825-111C6;0.0822607!10826-111C7;0.0839357!10454-106G4;0.0586605!10409-106B4;0.0481369!10638-108I8;0.00198539!10636-108I6;0.00753834!10513-107D9;0.241988!10420-106C6;0.0502774!10082-102B1;0.128841!10014-101C5;0.796169!10070-101I7;0.987702!10452-106G2;0.855201!10453-106G3;0.265355!10449-106F8;0.0888256!10042-101F6;0.165488!10069-101I6;0.552477!10193-103E4;0.101967!10631-108I1;0.294607!10438-106E6;0.026881!10488-107B2;0.383959!10196-103E7;0.00146794!10071-101I8;0.160844!10071-101I8;0.352495!10041-101F5;0.244332!10451-106G1;0.261131!10450-106F9;0.226758!10604-108F1;0.0322807!10605-108F2;0.420624!10606-108F3;0.852794!10603-108E9;0.403888!10497-107C2;0.477573!10448-106F7;0.0878286!10643-109A4;0.000284511!10426-106D3;0.00681468!10431-106D8;0.443021!10197-103E8;0.624309!10443-106F2;0.183113!10815-111B5;0.0987976!10816-111B6;0.090929!10817-111B7;0.129388!10015-101C6;0.0874594!10410-106B5;0.791106!10054-101G9;0.0209817!10758-110E2;0.149211!10711-109H9;0.0921706!10040-101F4;0.974372!10470-106I2;0.357869!10415-106C1;0.487694!10198-103E9;0.439046!10614-108G2;0.501104!10612-108F9;0.00702386!10549-107H9;0.545475!10615-108G3;0.00416146!10487-107B1;0.244521!10433-106E1;0.0995485!10688-109F4;0.188495!10444-106F3;0.534959!10444-106F3;0.00194203!10485-107A8;0.00355987!10413-106B8;0.154475!10175-103C4;0.102847!10161-103A8;0.356215!12131-128D7;0.774788!10624-108H3;2.57244e-05!10712-109I1;0.000117879!10205-103F7;0.00100311!10206-103F8;0.0901547!10207-103F9;0.00263479!10050-101G5;0.99929!10051-101G6;0.035689!10016-101C7;0.00953268!10046-101G1;0.225556!10778-110G4;0.0491459!10633-108I3;0.0870694!10818-111B8;0.0126824!10819-111B9;0.114694!10820-111C1;0.130202!10484-107A7;0.167321!10808-111A7;0.00655482!10169-103B7;0.0418268!10153-102I9;0.320205!13425-144D5;0.597464!13433-144E4;0.00796515!13437-144E8;0.0253938!11904-125F5;0.00647552!11905-125F6;8.66251e-05!10039-101F3;0.00076557!10791-110H8;0.393784!10017-101C8;0.0113036!10045-101F9;0.553455!10509-107D5;0.545848!10839-111E2;0.17532!10692-109F8;0.0323698!10079-102A7;0.425977!10078-102A6;0.133686!10721-110A1;0.0678068!10569-108B2;0.00738682!10570-108B3;0.000605367!10571-108B4;0.012182!10647-109A8;0.024502!10752-110D5;0.165657!10782-110G8;0.00456209!10726-110A6;0.0195765!10018-101C9;0.10753!10086-102B5;0.0582874!10182-103D2;0.0293052!10165-103B3;0.191126!10499-107C4;0.774128!10408-106B3;0.179207!10019-101D1;0.952393!10068-101I5;0.147945!10075-102A3;0.145756!10077-102A5;0.0521915!10727-110A7;0.000204454!10775-110G1;0.012692!10412-106B7;0.00345131!12231-129F8;0.676915!12232-129F9;0.222072!12233-129G1;0.293413!12234-129G2;0.171611!10414-106B9;0.100784!10170-103B8;0.936224!10183-103D3;0.147962!10150-102I6;0.153902!10174-103C3;0.510569!10155-103A2;0.160403!10038-101F2;0.721457!10838-111E1;0.564016!10759-110E3;0.0469003!10514-107E1;0.0160666!10465-106H6;0.147748!10691-109F7;0.138619!10843-111E6;0.471615!10844-111E7;0.0788229!11747-123G1;0.0840331!11748-123G2;0.0387241!11749-123G3;0.0365106!11750-123G4;0.0233564!11751-123G5;0.0334869!11840-124H4;0.0202461!11752-123G6;0.0131089!11753-123G7;0.109116!11754-123G8;0.0211394!11755-123G9;0.191832!11756-123H1;0.210562!11833-124G6;0.304082!11760-123H5;0.733285!11836-124G9;0.0501923!11758-123H3;0.0674863!11835-124G8;0.00564725!11762-123H7;0.0112999!11838-124H2;0.114947!11757-123H2;0.0544995!11759-123H4;0.0804613!11761-123H6;0.0464224!11842-124H6;0.132472!11837-124H1;0.0921012!10568-108B1;0.00521355!13230-141I8;0.0192376!13231-141I9;0.0227547!10696-109G3;0.0193685!10493-107B7;0.120396!10494-107B8;0.0382508!10850-111F4;0.0356882!10851-111F5;0.0101768!10852-111F6;0.0998887!10853-111F7;0.0400881!10854-111F8;0.0815375!10855-111F9;0.0826997!10856-111G1;0.00055415!10847-111F1;0.349067!10846-111E9;0.04575!10848-111F2;0.165732!10845-111E8;0.046644!10857-111G2;0.046795!10858-111G3;0.00526216!10156-103A3;0.427768!11901-125F2;0.476074!11902-125F3;0.00354912!11903-125F4;0.0073345!10689-109F5;0.0117989!10648-109A9;0.00534505!10784-110H1;0.155391!10744-110C6;0.83571!10772-110F7;6.97531e-05!10474-106I6;0.0401382!10600-108E6;0.02268!10684-109E9;0.0145377!12226-129F3;0.0807462!12227-129F4;0.786109!10508-107D4;0.776996!10539-107G8;0.303404!10607-108F4;0.0504327!10555-107I6;0.0391061!10774-110F9;0.318013!10637-108I7;0.0305337!10663-109C6;0.440332!10728-110A8;0.357231!10729-110A9;0.103447!10430-106D7;0.0108685!10730-110B1;0.0237414!10813-111B3;0.0862339!10812-111B2;0.0786658!10037-101F1;0.0308453!10172-103C1;0.360685!10163-103B1;0.120885!10076-102A4;0.632902!10073-102A1;0.193438!10036-101E9;0.204942!10195-103E6;0.200684!10277-104E7;0.194882!10434-106E2;0.49599!10550-107I1;0.704362!10545-107H5;0.222354!10544-107H4;0.699636!10704-109H2;0.134404!10510-107D6;0.541497!10558-107I9;0.915608!10020-101D2;0.0181872!10732-110B3;0.846462!10049-101G4;0.0305724!10698-109G5;0.283149!10437-106E5;0.788291!10417-106C3;0.525042!10035-101E8;0.422923!10171-103B9;0.268955!10157-103A4;0.136635!10034-101E7;0.469474!10072-101I9;0.312033!10199-103F1;0.264342!10200-103F2;0.110884!10697-109G4;0.259526!10723-110A3;0.960222!10179-103C8;0.583166!10160-103A7;0.432031!10180-103C9;0.65093!10162-103A9;0.548914!10021-101D3;0.457027!10840-111E3;0.738015!10706-109H4;0.00470414!10033-101E6;0.307198!10032-101E5;0.514566!10490-107B4;0.182128!10439-106E7;0.0607109!10022-101D4;0.358201!10176-103C5;0.758382!10469-106I1;0.28298!10067-101I4;0.383904!10411-106B6;0.430393!10471-106I3;0.0149386!10030-101E3;0.0291947!10475-106I7;0.71368!10787-110H4;0.0125515!10477-106I9;0.00603753!10695-109G2;0.000986242!11771-123I7;0.137182!11772-123I8;0.44855!11773-123I9;0.154632!10093-102C3;0.220701!10442-106F1;0.126687!10442-106F1;0.516484!10201-103F3;0.632012!10639-108I9;0.431336!11843-124H7;0.121591!11841-124H5;0.00275457!10693-109F9;0.00241942!10436-106E4;0.202813!10483-107A6;0.961882!10282-104F3;0.428547!10023-101D5;0.0186634!10066-101I3;0.0830357!10065-101I2;0.0228196!10800-110I8;0.0759863!10610-108F7;0.0281261!10841-111E4;0.32857!10541-107H1;0.000102287!10842-111E5;0.243422!10562-108A4;0.0548191!10024-101D6;0.0960179!10064-101I1;0.436505!10609-108F6;0.971382!10048-101G3;0.623756!10781-110G7;0.0520835!10181-103D1;0.887831!10159-103A6;0.392857!10056-101H2;0.718296!10737-110B8;0.0133297!10025-101D7;0.0505588!10044-101F8;0.00185146!10424-106D1;0.00587782!10463-106H4;0.00655879!10616-108G4;0.926535!10486-107A9;0.765066!10062-101H8;0.945667!10202-103F4;0.780967!10158-103A5;0.0618511!10441-106E9;0.872454!10031-101E4;0.0158108!10063-101H9;0.274382!10063-101H9;0.177799!11763-123H8;0.177099!11765-123I1;0.0347756!11768-123I4;0.0618366!10807-111A6;0.02455!10790-110H7;0.00695247!10798-110I6;0.0179112!10786-110H3;0.00165234!10591-108D6;0.0142115!10593-108D8;0.033431!10590-108D5;0.0699045!10026-101D8;0.0275622!10096-102C6;0.126246!10168-103B6;0.00827877!10154-103A1;0.277099!10209-103G2;0.713495!10061-101H7;0.55832!10027-101D9;0.0771262!10043-101F7;2.46007e-05!10783-110G9;0.000226187!10028-101E1;0.000689151!10060-101H6;0.936934!10203-103F5;0.501281!10059-101H5;0.174464!10047-101G2;0.0973045!10029-101E2;0.00361225!10058-101H4;0.0662249!10418-106C4;0.22802!10492-107B6;0.452714!10694-109G1;0.110176!10797-110I5;0.0796937!10057-101H3;0.0992455!10100-102D1;0.0107586!10055-101H1;0.6557!10204-103F6;0.0620767!10191-103E2;0.707938!10563-108A5;0.0489666
|name=TTHCTVTW,motif188,CNhs13466,T:1766.0(42.22%),B:25488.8(32.16%),P:1e-41
|name=TTHCTVTW,motif188,CNhs13466,T:1766.0(42.22%),B:25488.8(32.16%),P:1e-41
|tomtom_result=SFP1#MA0378.1;14;0.000579224;0.27571;0.401592;7;TTACTGTA;CCGTAGAAAATTTTTTTCAAT;-!SPIB#MA0081.1;0;0.00127978;0.609175;0.401592;7;TTACTGTA;TTCCTCT;-!GSM1#MA0308.1;13;0.00185061;0.880891;0.401592;8;TTACTGTA;TATACTCCGGAGTTTTTTAAT;-!sd#MA0243.1;4;0.00221809;1.05581;0.401592;8;TTACTGTA;GACATTCCTCGA;+!TBP#MA0386.1;12;0.00272749;1.29829;0.401592;8;TTACTGTA;ATCGAATATATATATCTAGTC;-!SUT2#MA0400.1;12;0.00288045;1.3711;0.401592;8;TTACTGTA;AAATTTTCGGAGTTTATCAT;-!squamosa#MA0082.1;1;0.00295988;1.4089;0.401592;8;TTACTGTA;ATTTCCATTTTTGG;-!ovo#MA0126.1;4;0.00714804;3.40247;0.737461;5;TTACTGTA;ACTGTTACT;-!prd#MA0239.1;4;0.00714804;3.40247;0.737461;5;TTACTGTA;ACTGTTACT;-!Klf4#MA0039.1;2;0.0083671;3.98274;0.737461;8;TTACTGTA;CCTTCCTTTA;-!FKH1#MA0296.1;10;0.0119083;5.66837;0.942495;8;TTACTGTA;TCCTCTTTGTTTACAATTCA;-!br_Z4#MA0013.1;5;0.0170823;8.13117;0.997635;6;TTACTGTA;TTTGTTTACTA;-!HOXA5#MA0158.1;2;0.0192925;9.18325;0.997635;6;TTACTGTA;AATTAGTG;-
}}
}}

Latest revision as of 14:23, 7 September 2012

Full Name: TTHCTVTW,motif188,CNhs13466,T:1766.0(42.22%),B:25488.8(32.16%),P:1e-41

Motif matrix
POACGT
11.76688.3132.451543.484
21.7661.7661.7661760.702
3656.952445.032118.322545.694
4363.796932.44884.768384.988
5434.436256.07201.324874.17
6513.906605.738644.591.766
7558.0561.766301.986904.192
8817.658132.451.766814.126

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SFP1#MA0378.1140.0005792240.275710.4015927TTACTGTACCGTAGAAAATTTTTTTCAAT-
SPIB#MA0081.100.001279780.6091750.4015927TTACTGTATTCCTCT-
GSM1#MA0308.1130.001850610.8808910.4015928TTACTGTATATACTCCGGAGTTTTTTAAT-
sd#MA0243.140.002218091.055810.4015928TTACTGTAGACATTCCTCGA+
TBP#MA0386.1120.002727491.298290.4015928TTACTGTAATCGAATATATATATCTAGTC-
SUT2#MA0400.1120.002880451.37110.4015928TTACTGTAAAATTTTCGGAGTTTATCAT-
squamosa#MA0082.110.002959881.40890.4015928TTACTGTAATTTCCATTTTTGG-
ovo#MA0126.140.007148043.402470.7374615TTACTGTAACTGTTACT-
prd#MA0239.140.007148043.402470.7374615TTACTGTAACTGTTACT-
Klf4#MA0039.120.00836713.982740.7374618TTACTGTACCTTCCTTTA-
FKH1#MA0296.1100.01190835.668370.9424958TTACTGTATCCTCTTTGTTTACAATTCA-
br_Z4#MA0013.150.01708238.131170.9976356TTACTGTATTTGTTTACTA-
HOXA5#MA0158.120.01929259.183250.9976356TTACTGTAAATTAGTG-
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