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MacroAPE 1083:RREB1 si: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;6.822545901012192;3.088727049493904;10.103514891076204;5.985212158417674!2;2.059151366329265;4.11830273265853;10.748606693100614;9.073939207...")
 
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0347!10717-109I6;0.609718!10455-106G5;0.700986!10534-107G3;0.0184084!10429-106D6;0.0003275!10464-106H5;0.00707261!10827-111C8;0.000569448!10789-110H6;0.00306585!10828-111C9;0.020011!10788-110H5;0.0876009!10792-110H9;0.0013532!10765-110E9;0.00571169!10829-111D1;0.204452!10830-111D2;0.00878425!10831-111D3;0.106805!10832-111D4;0.0249225!10833-111D5;0.0196425!10764-110E8;0.00451691!10770-110F5;0.202332!10399-106A3;0.0126315!10400-106A4;0.00855872!10405-106A9;0.0064452!10834-111D6;0.0043942!10835-111D7;0.0154794!10836-111D8;0.0007673!10837-111D9;0.0137918!10699-109G6;0.0105218!10802-111A1;0.00364476!10796-110I4;0.0193779!10010-101C1;0.642521!10810-111A9;0.0364188!10421-106C7;0.000417893!10708-109H6;0.0444637!12235-129G3;0.314884!12236-129G4;0.239755!12237-129G5;0.54449!10167-103B5;0.13462!10151-102I7;0.658801!10428-106D5;0.90853!10795-110I3;0.979734!10805-111A4;0.278226!10052-101G7;0.883426!10189-103D9;0.0233356!10589-108D4;0.372947!10425-106D2;0.0934028!10427-106D4;0.960527!10702-109G9;0.019641!10432-106D9;0.0491366!10496-107C1;0.342437!10718-109I7;0.0371239!10011-101C2;0.0130346!10053-101G8;0.171119!10686-109F2;0.639837!10084-102B3;0.0267629!10012-101C3;0.927614!10085-102B4;0.810285!10482-107A5;0.961198!10419-106C5;0.787298!10080-102A8;0.540585!10760-110E4;0.0300308!10709-109H7;0.517076!10710-109H8;0.088829!10703-109H1;0.124957!10719-109I8;0.373057!10642-109A3;0.415663!10177-103C6;0.685907!10164-103B2;0.814235!10173-103C2;0.8561!10166-103B4;0.896551!10083-102B2;0.905212!10188-103D8;0.868361!10552-107I3;0.861856!10553-107I4;0.174406!10013-101C4;0.440879!10536-107G5;0.143045!10618-108G6;0.354441!10423-106C9;0.877521!10785-110H2;0.819209!12238-129G6;0.930721!12239-129G7;0.0820311!12240-129G8;0.52776!10416-106C2;0.245373!10801-110I9;3.99733e-05!10766-110F1;0.00851723!10824-111C5;8.98441e-05!10825-111C6;0.0205485!10826-111C7;0.0376777!10454-106G4;0.0218183!10409-106B4;0.000878507!10638-108I8;0.000172679!10636-108I6;0.0278336!10513-107D9;0.151711!10420-106C6;0.485926!10082-102B1;0.0140518!10014-101C5;0.141111!10070-101I7;0.175622!10452-106G2;0.119327!10453-106G3;0.0745744!10449-106F8;0.0685687!10042-101F6;0.111082!10069-101I6;0.902928!10193-103E4;0.372566!10631-108I1;0.694409!10438-106E6;0.00111429!10488-107B2;0.0741024!10196-103E7;0.151838!10071-101I8;0.133713!10071-101I8;0.465665!10041-101F5;0.843484!10451-106G1;0.171874!10450-106F9;0.368!10604-108F1;0.424873!10605-108F2;0.707879!10606-108F3;0.367611!10603-108E9;0.733072!10497-107C2;0.903001!10448-106F7;0.781468!10643-109A4;0.996611!10426-106D3;0.972265!10431-106D8;0.832749!10197-103E8;0.642146!10443-106F2;0.499491!10815-111B5;0.356897!10816-111B6;0.283782!10817-111B7;0.4708!10015-101C6;0.398624!10410-106B5;0.186643!10054-101G9;0.102437!10758-110E2;0.232444!10711-109H9;0.360722!10040-101F4;0.0425131!10470-106I2;0.871861!10415-106C1;0.0822783!10198-103E9;0.0752844!10614-108G2;0.137069!10612-108F9;0.35406!10549-107H9;0.108661!10615-108G3;0.00833142!10487-107B1;0.304695!10433-106E1;0.170977!10688-109F4;0.400069!10444-106F3;0.758029!10444-106F3;0.517647!10485-107A8;0.602091!10413-106B8;0.749768!10175-103C4;0.511587!10161-103A8;0.807982!12131-128D7;0.750152!10624-108H3;0.700385!10712-109I1;0.5591!10205-103F7;0.0555472!10206-103F8;0.101633!10207-103F9;0.308986!10050-101G5;0.050546!10051-101G6;0.832136!10016-101C7;0.411177!10046-101G1;0.280632!10778-110G4;0.573303!10633-108I3;0.0447947!10818-111B8;0.968087!10819-111B9;0.100375!10820-111C1;0.102565!10484-107A7;0.0734846!10808-111A7;0.639527!10169-103B7;0.0295078!10153-102I9;0.628565!13425-144D5;0.760981!13433-144E4;0.626461!13437-144E8;0.536203!11904-125F5;0.619033!11905-125F6;0.393661!10039-101F3;0.71547!10791-110H8;0.907636!10017-101C8;0.647629!10045-101F9;0.140066!10509-107D5;0.0425894!10839-111E2;0.062211!10692-109F8;0.389042!10079-102A7;0.360785!10078-102A6;0.560374!10721-110A1;0.501007!10569-108B2;0.120593!10570-108B3;0.017271!10571-108B4;0.50124!10647-109A8;0.130123!10752-110D5;0.454076!10782-110G8;0.00593753!10726-110A6;0.329463!10018-101C9;0.427309!10086-102B5;0.456329!10182-103D2;0.828467!10165-103B3;0.938792!10499-107C4;0.93576!10408-106B3;0.122685!10019-101D1;0.992661!10068-101I5;0.114332!10075-102A3;0.115328!10077-102A5;0.118127!10727-110A7;0.195792!10775-110G1;0.000985697!10412-106B7;0.00777831!12231-129F8;0.0848619!12232-129F9;0.114781!12233-129G1;0.152348!12234-129G2;0.242394!10414-106B9;0.360347!10170-103B8;0.0863234!10183-103D3;0.774008!10150-102I6;0.791826!10174-103C3;0.836872!10155-103A2;0.711645!10038-101F2;0.838162!10838-111E1;0.978344!10759-110E3;0.638011!10514-107E1;0.674731!10465-106H6;0.853456!10691-109F7;0.665557!10843-111E6;0.755368!10844-111E7;0.0332765!11747-123G1;0.0929849!11748-123G2;0.405761!11749-123G3;0.235373!11750-123G4;0.211664!11751-123G5;0.216586!11840-124H4;0.0530564!11752-123G6;0.104355!11753-123G7;0.443597!11754-123G8;0.0133346!11755-123G9;0.411315!11756-123H1;0.719867!11833-124G6;0.912417!11760-123H5;0.765765!11836-124G9;0.722613!11758-123H3;0.214955!11835-124G8;0.685162!11762-123H7;0.415186!11838-124H2;0.179555!11757-123H2;0.29079!11759-123H4;0.321832!11761-123H6;0.645298!11842-124H6;0.279748!11837-124H1;0.407589!10568-108B1;0.271701!13230-141I8;0.396561!13231-141I9;0.620294!10696-109G3;0.260738!10493-107B7;0.211501!10494-107B8;0.211153!10850-111F4;0.0173634!10851-111F5;0.120641!10852-111F6;0.803176!10853-111F7;0.942199!10854-111F8;0.326857!10855-111F9;0.532378!10856-111G1;0.319035!10847-111F1;0.471346!10846-111E9;0.127578!10848-111F2;0.447541!10845-111E8;0.39868!10857-111G2;0.494075!10858-111G3;0.918322!10156-103A3;0.49665!11901-125F2;0.893087!11902-125F3;0.576176!11903-125F4;0.678731!10689-109F5;0.949884!10648-109A9;0.70518!10784-110H1;0.822257!10744-110C6;0.394818!10772-110F7;0.426219!10474-106I6;0.0133401!10600-108E6;0.602661!10684-109E9;0.272504!12226-129F3;0.668105!12227-129F4;0.911381!10508-107D4;0.146488!10539-107G8;0.062288!10607-108F4;0.125146!10555-107I6;0.0111463!10774-110F9;0.219532!10637-108I7;0.153757!10663-109C6;0.0889843!10728-110A8;0.229702!10729-110A9;0.574535!10430-106D7;0.000642761!10730-110B1;0.0315555!10813-111B3;0.0035115!10812-111B2;0.00252052!10037-101F1;0.0359429!10172-103C1;0.853162!10163-103B1;0.769412!10076-102A4;0.71977!10073-102A1;0.879964!10036-101E9;0.900186!10195-103E6;0.957877!10277-104E7;0.974208!10434-106E2;0.967326!10550-107I1;0.797911!10545-107H5;0.655631!10544-107H4;0.459846!10704-109H2;0.469721!10510-107D6;0.334988!10558-107I9;0.511961!10020-101D2;0.789647!10732-110B3;0.101527!10049-101G4;0.879911!10698-109G5;0.256549!10437-106E5;0.775365!10417-106C3;0.317464!10035-101E8;0.0380108!10171-103B9;0.844614!10157-103A4;0.598337!10034-101E7;0.934755!10072-101I9;0.901031!10199-103F1;0.696056!10200-103F2;0.83469!10697-109G4;0.267369!10723-110A3;0.108681!10179-103C8;0.0820557!10160-103A7;0.727346!10180-103C9;0.927123!10162-103A9;0.279753!10021-101D3;0.615476!10840-111E3;0.0285816!10706-109H4;0.0157704!10033-101E6;0.349381!10032-101E5;0.755624!10490-107B4;0.874829!10439-106E7;0.700263!10022-101D4;0.855415!10176-103C5;0.274639!10469-106I1;0.578195!10067-101I4;0.637925!10411-106B6;0.220493!10471-106I3;0.503362!10030-101E3;0.890382!10475-106I7;0.0844652!10787-110H4;0.163469!10477-106I9;0.14198!10695-109G2;0.782039!11771-123I7;0.00832847!11772-123I8;0.629983!11773-123I9;0.11228!10093-102C3;0.0120146!10442-106F1;0.943787!10442-106F1;0.45447!10201-103F3;0.424321!10639-108I9;0.317293!11843-124H7;0.840227!11841-124H5;0.799492!10693-109F9;0.606643!10436-106E4;0.947249!10483-107A6;0.155884!10282-104F3;0.18528!10023-101D5;0.717909!10066-101I3;0.365034!10065-101I2;0.455559!10800-110I8;0.40231!10610-108F7;0.165413!10841-111E4;0.198981!10541-107H1;0.0642868!10842-111E5;0.00273724!10562-108A4;0.158697!10024-101D6;0.042234!10064-101I1;0.442201!10609-108F6;0.472057!10048-101G3;0.0864368!10781-110G7;0.0554261!10181-103D1;0.0286074!10159-103A6;0.825333!10056-101H2;0.763101!10737-110B8;0.552304!10025-101D7;0.0367503!10044-101F8;0.875625!10424-106D1;0.216887!10463-106H4;0.00878628!10616-108G4;0.178727!10486-107A9;0.821408!10062-101H8;0.00270329!10202-103F4;0.0390684!10158-103A5;0.929492!10441-106E9;0.834503!10031-101E4;0.851708!10063-101H9;0.932668!10063-101H9;0.73026!11763-123H8;0.352067!11765-123I1;0.142673!11768-123I4;0.0164616!10807-111A6;0.0755781!10790-110H7;0.937624!10798-110I6;0.366697!10786-110H3;0.714021!10591-108D6;0.617838!10593-108D8;0.643991!10590-108D5;0.368793!10026-101D8;0.798198!10096-102C6;0.518667!10168-103B6;0.99226!10154-103A1;0.884614!10209-103G2;0.973463!10061-101H7;0.671305!10027-101D9;0.708792!10043-101F7;0.0229426!10783-110G9;0.561555!10028-101E1;0.47373!10060-101H6;0.275091!10203-103F5;0.0980189!10059-101H5;0.457063!10047-101G2;0.399324!10029-101E2;0.874381!10058-101H4;0.776653!10418-106C4;0.335579!10492-107B6;0.186543!10694-109G1;0.105957!10797-110I5;0.0534778!10057-101H3;0.651973!10100-102D1;0.330667!10055-101H1;0.308226!10204-103F6;0.0660046!10191-103E2;0.0157143!10563-108A5;0.494567
|name=RREB1_si
|name=RREB1_si
|tomtom_result=RREB1#MA0073.1;-1;2.49717e-34;1.18865e-31;2.37731e-31;20;GGGGGGGGGGGTGGTTTGGGGT;TGGGGGGGGGTGGTTTGGGG;-!Pax4#MA0068.1;1;5.99012e-07;0.00028513;0.00028513;22;GGGGGGGGGGGTGGTTTGGGGT;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!ADR1#MA0268.1;-15;0.00157934;0.751767;0.501178;7;GGGGGGGGGGGTGGTTTGGGGT;GTGGGGT;-!YGR067C#MA0425.1;-8;0.00477413;2.27249;0.859624;14;GGGGGGGGGGGTGGTTTGGGGT;TGAAAAAGTGGGGT;-!HAP4#MA0315.1;-4;0.00566648;2.69724;0.859624;15;GGGGGGGGGGGTGGTTTGGGGT;TCGCCTCTGATTGGT;-!RUNX1#MA0002.2;-6;0.00648601;3.08734;0.859624;11;GGGGGGGGGGGTGGTTTGGGGT;GTCTGTGGTTT;+!Macho-1#MA0118.1;-4;0.00754096;3.5895;0.859624;9;GGGGGGGGGGGTGGTTTGGGGT;TGGGGGGTC;+!RPH1#MA0372.1;-14;0.00781245;3.71872;0.859624;8;GGGGGGGGGGGTGGTTTGGGGT;TTAGGGGT;-!SP1#MA0079.1;-6;0.010211;4.86042;0.859624;10;GGGGGGGGGGGTGGTTTGGGGT;GGGGCGGGGT;+!ESR1#MA0112.2;-2;0.010607;5.04892;0.859624;20;GGGGGGGGGGGTGGTTTGGGGT;AGGTCAGGGTGACCTGGGCC;-!BRCA1#MA0133.1;-12;0.0109376;5.20629;0.859624;7;GGGGGGGGGGGTGGTTTGGGGT;GTGTTGT;-!Gfi#MA0038.1;-8;0.0112731;5.366;0.859624;10;GGGGGGGGGGGTGGTTTGGGGT;CAGTGATTTG;-!SWI5#MA0402.1;-8;0.0125731;5.98477;0.859624;8;GGGGGGGGGGGTGGTTTGGGGT;TGCTGGTT;+!AFT1#MA0269.1;-2;0.0130466;6.21018;0.859624;20;GGGGGGGGGGGTGGTTTGGGGT;CCAATCGGGTGCAATATGTAA;-!NDT80#MA0343.1;0;0.0135445;6.44718;0.859624;21;GGGGGGGGGGGTGGTTTGGGGT;TTGCGTTTTTGTGGCCGGAAA;-!AFT2#MA0270.1;-7;0.016696;7.94729;0.993412;8;GGGGGGGGGGGTGGTTTGGGGT;GGGGTGTG;-!INSM1#MA0155.1;-11;0.0180609;8.59697;1;11;GGGGGGGGGGGTGGTTTGGGGT;TGTCAGGGGGCG;+!Gamyb#MA0034.1;-9;0.0200171;9.52816;1;10;GGGGGGGGGGGTGGTTTGGGGT;GGCGGTTGTC;-
}}
}}

Latest revision as of 14:29, 7 September 2012

Full Name: RREB1_si

Motif matrix
POACGT
16.8225459010121923.08872704949390410.1035148910762045.985212158417674
22.0591513663292654.1183027326585310.7486066931006149.073939207911577
30.07.01478784158232616.0887270494939052.896485108923796
42.0591513663292650.014.8669094257591459.073939207911577
52.0591513663292652.89648510892379611.9704243168353739.073939207911577
64.118302732658530.837333742594520611.1330905742408579.911272950506095
70.00.837333742594520620.2070297821524364.955636475253048
80.03.733818851518314413.1922419405701069.073939207911577
90.00.837333742594520617.3105446732286377.852121584176844
100.00.837333742594520623.1035148910762052.059151366329265
110.02.512001227783561515.2513933068993868.23660546531706
120.00.01.674667485189041324.325332514810967
130.83733374259452060.024.3253325148109670.8373337425945206
142.0591513663292652.512001227783561512.354908197975599.073939207911577
150.00.83733374259452066.17745409898780818.985212158417674
161.67466748518904130.83733374259452064.1183027326585319.369696039557915
170.00.83733374259452068.2366054653170616.92606079208842
180.01.674667485189041324.3253325148109670.0
191.67466748518904130.017.3105446732286377.014787841582326
200.00.837333742594520622.2661811484816852.896485108923796
210.00.017.3105446732286378.689455326771363
223.9260607920884223.54157691094820635.14787841582315613.384483881140218

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RREB1#MA0073.1-12.49717e-341.18865e-312.37731e-3120GGGGGGGGGGGTGGTTTGGGGTTGGGGGGGGGTGGTTTGGGG-
Pax4#MA0068.115.99012e-070.000285130.0002851322GGGGGGGGGGGTGGTTTGGGGTGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
ADR1#MA0268.1-150.001579340.7517670.5011787GGGGGGGGGGGTGGTTTGGGGTGTGGGGT-
YGR067C#MA0425.1-80.004774132.272490.85962414GGGGGGGGGGGTGGTTTGGGGTTGAAAAAGTGGGGT-
HAP4#MA0315.1-40.005666482.697240.85962415GGGGGGGGGGGTGGTTTGGGGTTCGCCTCTGATTGGT-
RUNX1#MA0002.2-60.006486013.087340.85962411GGGGGGGGGGGTGGTTTGGGGTGTCTGTGGTTT+
Macho-1#MA0118.1-40.007540963.58950.8596249GGGGGGGGGGGTGGTTTGGGGTTGGGGGGTC+
RPH1#MA0372.1-140.007812453.718720.8596248GGGGGGGGGGGTGGTTTGGGGTTTAGGGGT-
SP1#MA0079.1-60.0102114.860420.85962410GGGGGGGGGGGTGGTTTGGGGTGGGGCGGGGT+
ESR1#MA0112.2-20.0106075.048920.85962420GGGGGGGGGGGTGGTTTGGGGTAGGTCAGGGTGACCTGGGCC-
BRCA1#MA0133.1-120.01093765.206290.8596247GGGGGGGGGGGTGGTTTGGGGTGTGTTGT-
Gfi#MA0038.1-80.01127315.3660.85962410GGGGGGGGGGGTGGTTTGGGGTCAGTGATTTG-
SWI5#MA0402.1-80.01257315.984770.8596248GGGGGGGGGGGTGGTTTGGGGTTGCTGGTT+
AFT1#MA0269.1-20.01304666.210180.85962420GGGGGGGGGGGTGGTTTGGGGTCCAATCGGGTGCAATATGTAA-
NDT80#MA0343.100.01354456.447180.85962421GGGGGGGGGGGTGGTTTGGGGTTTGCGTTTTTGTGGCCGGAAA-
AFT2#MA0270.1-70.0166967.947290.9934128GGGGGGGGGGGTGGTTTGGGGTGGGGTGTG-
INSM1#MA0155.1-110.01806098.59697111GGGGGGGGGGGTGGTTTGGGGTTGTCAGGGGGCG+
Gamyb#MA0034.1-90.02001719.52816110GGGGGGGGGGGTGGTTTGGGGTGGCGGTTGTC-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:RREB1_si&oldid=2134376"