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MacroAPE 1083:GGTGACACAKC,motif113: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;163.128;53.405;568.035;186.432!2;78.651;8.739;570.948;312.662!3;3.884;0.971;0.971;965.174!4;77.68;135.94;756.409;0.971!5;760.293;96.129;55.3...")
 
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717-109I6;0.4971!10455-106G5;0.526099!10534-107G3;0.125124!10429-106D6;0.0517006!10464-106H5;0.189907!10827-111C8;0.0256631!10789-110H6;0.132665!10828-111C9;0.103048!10788-110H5;0.768773!10792-110H9;0.43308!10765-110E9;0.566936!10829-111D1;0.059724!10830-111D2;0.686403!10831-111D3;0.307326!10832-111D4;0.204496!10833-111D5;0.141395!10764-110E8;0.135798!10770-110F5;0.770787!10399-106A3;0.466235!10400-106A4;0.280448!10405-106A9;0.24066!10834-111D6;0.356146!10835-111D7;0.40171!10836-111D8;0.71476!10837-111D9;0.128097!10699-109G6;0.0961881!10802-111A1;0.0536587!10796-110I4;0.031817!10010-101C1;0.439119!10810-111A9;0.559538!10421-106C7;0.0423961!10708-109H6;0.825704!12235-129G3;0.462767!12236-129G4;0.0250965!12237-129G5;0.3635!10167-103B5;0.296885!10151-102I7;0.639068!10428-106D5;0.686582!10795-110I3;0.22289!10805-111A4;0.411342!10052-101G7;0.00717113!10189-103D9;0.480703!10589-108D4;0.775837!10425-106D2;0.317722!10427-106D4;0.00783764!10702-109G9;0.981023!10432-106D9;0.69799!10496-107C1;0.052248!10718-109I7;0.924927!10011-101C2;0.39571!10053-101G8;0.800641!10686-109F2;0.184478!10084-102B3;0.784258!10012-101C3;0.716535!10085-102B4;0.707446!10482-107A5;0.101242!10419-106C5;0.222212!10080-102A8;0.037125!10760-110E4;0.648962!10709-109H7;0.318729!10710-109H8;0.519879!10703-109H1;0.0811587!10719-109I8;0.287997!10642-109A3;0.308143!10177-103C6;0.016443!10164-103B2;0.487286!10173-103C2;0.410223!10166-103B4;0.366926!10083-102B2;0.423878!10188-103D8;0.358923!10552-107I3;0.770565!10553-107I4;0.321779!10013-101C4;0.756944!10536-107G5;0.723726!10618-108G6;0.377997!10423-106C9;0.939637!10785-110H2;0.666169!12238-129G6;0.668862!12239-129G7;0.00696592!12240-129G8;0.836409!10416-106C2;0.0282384!10801-110I9;0.115401!10766-110F1;0.284876!10824-111C5;0.399075!10825-111C6;0.240378!10826-111C7;0.193307!10454-106G4;0.224782!10409-106B4;0.242045!10638-108I8;0.0783435!10636-108I6;0.163273!10513-107D9;0.974138!10420-106C6;0.153872!10082-102B1;0.134445!10014-101C5;0.272528!10070-101I7;0.955707!10452-106G2;0.761774!10453-106G3;0.632473!10449-106F8;0.880101!10042-101F6;0.595724!10069-101I6;0.669288!10193-103E4;0.897499!10631-108I1;0.490454!10438-106E6;0.0959553!10488-107B2;0.412562!10196-103E7;0.601926!10071-101I8;0.50376!10071-101I8;0.748285!10041-101F5;0.355288!10451-106G1;0.231329!10450-106F9;0.941869!10604-108F1;0.154476!10605-108F2;0.549789!10606-108F3;0.493644!10603-108E9;0.842592!10497-107C2;0.624922!10448-106F7;0.934733!10643-109A4;0.0410186!10426-106D3;0.426123!10431-106D8;0.635033!10197-103E8;0.266515!10443-106F2;0.933978!10815-111B5;0.973863!10816-111B6;0.310353!10817-111B7;0.465987!10015-101C6;0.409969!10410-106B5;0.98638!10054-101G9;0.377814!10758-110E2;0.485968!10711-109H9;0.290412!10040-101F4;0.381199!10470-106I2;0.519887!10415-106C1;0.388614!10198-103E9;0.181165!10614-108G2;0.724012!10612-108F9;0.344824!10549-107H9;0.682256!10615-108G3;0.0766618!10487-107B1;0.781139!10433-106E1;0.673532!10688-109F4;0.237721!10444-106F3;0.670642!10444-106F3;0.282077!10485-107A8;0.23217!10413-106B8;0.146471!10175-103C4;0.831586!10161-103A8;0.477706!12131-128D7;0.536365!10624-108H3;0.792353!10712-109I1;0.853006!10205-103F7;0.309075!10206-103F8;0.590845!10207-103F9;0.804656!10050-101G5;0.223987!10051-101G6;0.449639!10016-101C7;0.871239!10046-101G1;0.758171!10778-110G4;0.796684!10633-108I3;0.83145!10818-111B8;0.283937!10819-111B9;0.251904!10820-111C1;0.256163!10484-107A7;0.248813!10808-111A7;0.651485!10169-103B7;0.879832!10153-102I9;0.640653!13425-144D5;0.761489!13433-144E4;0.146812!13437-144E8;0.157663!11904-125F5;0.148894!11905-125F6;0.399497!10039-101F3;0.0239471!10791-110H8;0.489352!10017-101C8;0.812673!10045-101F9;0.929465!10509-107D5;0.655685!10839-111E2;0.711533!10692-109F8;0.088361!10079-102A7;0.238115!10078-102A6;0.655742!10721-110A1;0.744617!10569-108B2;0.101493!10570-108B3;0.150836!10571-108B4;0.194652!10647-109A8;0.246233!10752-110D5;0.195786!10782-110G8;0.601589!10726-110A6;0.57299!10018-101C9;0.320397!10086-102B5;0.127866!10182-103D2;0.142937!10165-103B3;0.973813!10499-107C4;0.798618!10408-106B3;0.10131!10019-101D1;0.339679!10068-101I5;0.145793!10075-102A3;0.902272!10077-102A5;0.402961!10727-110A7;0.33069!10775-110G1;0.966497!10412-106B7;0.184509!12231-129F8;0.272677!12232-129F9;0.158998!12233-129G1;0.203745!12234-129G2;0.100021!10414-106B9;0.112024!10170-103B8;0.637955!10183-103D3;0.611486!10150-102I6;0.691105!10174-103C3;0.782165!10155-103A2;0.864058!10038-101F2;0.825!10838-111E1;0.975774!10759-110E3;0.23913!10514-107E1;0.258345!10465-106H6;0.893148!10691-109F7;0.239675!10843-111E6;0.243378!10844-111E7;0.0412427!11747-123G1;0.124099!11748-123G2;0.823957!11749-123G3;0.550838!11750-123G4;0.369289!11751-123G5;0.471697!11840-124H4;0.52429!11752-123G6;0.625396!11753-123G7;0.0230548!11754-123G8;0.342909!11755-123G9;0.216174!11756-123H1;0.816303!11833-124G6;0.238512!11760-123H5;0.0804423!11836-124G9;0.420993!11758-123H3;0.015054!11835-124G8;0.264777!11762-123H7;0.224189!11838-124H2;0.624982!11757-123H2;0.0669363!11759-123H4;0.548615!11761-123H6;0.580194!11842-124H6;0.0916694!11837-124H1;0.393441!10568-108B1;0.246444!13230-141I8;0.331775!13231-141I9;0.439767!10696-109G3;0.322883!10493-107B7;0.344373!10494-107B8;0.642308!10850-111F4;0.0129003!10851-111F5;0.233716!10852-111F6;0.254607!10853-111F7;0.587536!10854-111F8;0.357032!10855-111F9;0.271063!10856-111G1;0.0554164!10847-111F1;0.128766!10846-111E9;0.734375!10848-111F2;0.442069!10845-111E8;0.772742!10857-111G2;0.603992!10858-111G3;0.0690869!10156-103A3;0.599819!11901-125F2;0.701748!11902-125F3;0.380187!11903-125F4;0.743441!10689-109F5;0.231564!10648-109A9;0.695082!10784-110H1;0.0868996!10744-110C6;0.46838!10772-110F7;0.909005!10474-106I6;0.167008!10600-108E6;0.0512883!10684-109E9;0.554426!12226-129F3;0.879312!12227-129F4;0.231237!10508-107D4;0.124938!10539-107G8;0.255115!10607-108F4;0.158287!10555-107I6;0.14264!10774-110F9;0.142225!10637-108I7;0.1199!10663-109C6;0.140345!10728-110A8;0.221025!10729-110A9;0.218567!10430-106D7;0.634241!10730-110B1;0.0182934!10813-111B3;0.700001!10812-111B2;0.446508!10037-101F1;0.765213!10172-103C1;0.488824!10163-103B1;0.57101!10076-102A4;0.725946!10073-102A1;0.717267!10036-101E9;0.217947!10195-103E6;0.550342!10277-104E7;0.542248!10434-106E2;0.805118!10550-107I1;0.935069!10545-107H5;0.770353!10544-107H4;0.633444!10704-109H2;0.622275!10510-107D6;0.620162!10558-107I9;0.34334!10020-101D2;0.509723!10732-110B3;0.666336!10049-101G4;0.752114!10698-109G5;0.984281!10437-106E5;0.52458!10417-106C3;0.535986!10035-101E8;0.792177!10171-103B9;0.613118!10157-103A4;0.553706!10034-101E7;0.68162!10072-101I9;0.624862!10199-103F1;0.18552!10200-103F2;0.727005!10697-109G4;0.935237!10723-110A3;0.369316!10179-103C8;0.677951!10160-103A7;0.81662!10180-103C9;0.879948!10162-103A9;0.141023!10021-101D3;0.823955!10840-111E3;0.15518!10706-109H4;0.936484!10033-101E6;0.775108!10032-101E5;0.852218!10490-107B4;0.547768!10439-106E7;0.3207!10022-101D4;0.217608!10176-103C5;0.527906!10469-106I1;0.508004!10067-101I4;0.28449!10411-106B6;0.0747812!10471-106I3;0.393749!10030-101E3;0.162902!10475-106I7;0.694869!10787-110H4;0.115666!10477-106I9;0.0908829!10695-109G2;0.24901!11771-123I7;0.777231!11772-123I8;0.646655!11773-123I9;0.878611!10093-102C3;0.718685!10442-106F1;0.68281!10442-106F1;0.741036!10201-103F3;0.451172!10639-108I9;0.468888!11843-124H7;0.114023!11841-124H5;0.894329!10693-109F9;0.128303!10436-106E4;0.343221!10483-107A6;0.966729!10282-104F3;0.803129!10023-101D5;0.911536!10066-101I3;0.693674!10065-101I2;0.632526!10800-110I8;0.953969!10610-108F7;0.123113!10841-111E4;0.119778!10541-107H1;0.149714!10842-111E5;0.904086!10562-108A4;0.410293!10024-101D6;0.994049!10064-101I1;0.902581!10609-108F6;0.38534!10048-101G3;0.0913695!10781-110G7;0.336541!10181-103D1;0.0126788!10159-103A6;0.888597!10056-101H2;0.972071!10737-110B8;0.716264!10025-101D7;0.733606!10044-101F8;0.266156!10424-106D1;0.643669!10463-106H4;0.856034!10616-108G4;0.511!10486-107A9;0.123606!10062-101H8;0.566281!10202-103F4;0.987169!10158-103A5;0.922726!10441-106E9;0.766893!10031-101E4;0.00422716!10063-101H9;0.655353!10063-101H9;0.196972!11763-123H8;0.773281!11765-123I1;0.652782!11768-123I4;0.960574!10807-111A6;0.954592!10790-110H7;0.0206281!10798-110I6;0.0444143!10786-110H3;0.0428222!10591-108D6;0.967594!10593-108D8;0.150202!10590-108D5;0.937926!10026-101D8;0.180215!10096-102C6;0.217125!10168-103B6;0.01279!10154-103A1;0.753931!10209-103G2;0.635454!10061-101H7;0.431851!10027-101D9;0.852328!10043-101F7;0.150148!10783-110G9;0.615759!10028-101E1;0.0066848!10060-101H6;0.990515!10203-103F5;0.833176!10059-101H5;0.651727!10047-101G2;0.898953!10029-101E2;0.755597!10058-101H4;0.205028!10418-106C4;0.615612!10492-107B6;0.22331!10694-109G1;0.0145634!10797-110I5;0.980658!10057-101H3;0.503398!10100-102D1;0.808598!10055-101H1;0.2468!10204-103F6;0.239374!10191-103E2;0.776519!10563-108A5;0.972872
|name=GGTGACACAKC,motif113,CNhs13495,T:971.0(17.79%),B:8595.4(10.95%),P:1e-50
|name=GGTGACACAKC,motif113,CNhs13495,T:971.0(17.79%),B:8595.4(10.95%),P:1e-50
|tomtom_result=NFE2L2#MA0150.1;-1;0.000260413;0.123956;0.141575;10;GGTGACACATC;ATGACTCAGCA;+!CUP9#MA0288.1;-2;0.000298131;0.14191;0.141575;9;GGTGACACATC;TGACACATT;+!Six4#MA0204.1;-2;0.000593132;0.282331;0.187775;6;GGTGACACATC;TGATAC;+!vis#MA0252.1;-2;0.00137119;0.652687;0.325572;6;GGTGACACATC;TGACAG;+!AP1#MA0099.2;-2;0.00265189;1.2623;0.503727;7;GGTGACACATC;TGACTCA;+!GCN4#MA0303.1;5;0.00331245;1.57672;0.524332;11;GGTGACACATC;TGAAGTATGACTCATCCCTTG;-!Fos#MA0099.1;-1;0.00480809;2.28865;0.570112;8;GGTGACACATC;GTGAGTCA;+!TOS8#MA0408.1;0;0.00507904;2.41762;0.570112;8;GGTGACACATC;TTTGACAG;-!STE12#MA0393.1;-2;0.00540249;2.57159;0.570112;7;GGTGACACATC;TGAAACA;+!ESR1#MA0112.2;7;0.00609047;2.89906;0.57421;11;GGTGACACATC;AGGTCAGGGTGACCTGGGCC;-!ARG81#MA0272.1;-1;0.0066505;3.16564;0.57421;8;GGTGACACATC;GTGACTCT;+!achi#MA0207.1;-2;0.00821958;3.91252;0.600503;6;GGTGACACATC;TGACAG;+!ARG80#MA0271.1;-2;0.01024;4.87425;0.694675;6;GGTGACACATC;AGACGC;+!PPARG#MA0066.1;9;0.0112043;5.33326;0.70942;11;GGTGACACATC;GTAGGTCACGGTGACCTACT;+!hth#MA0227.1;-2;0.0135452;6.44751;0.747711;6;GGTGACACATC;TGACAG;+!Foxa2#MA0047.2;1;0.0137433;6.54181;0.747711;11;GGTGACACATC;TGTTTACTTAGG;+!so#MA0246.1;-2;0.0143304;6.82128;0.747711;6;GGTGACACATC;TGATAC;+!Pax2#MA0067.1;1;0.0165147;7.861;0.747711;7;GGTGACACATC;GCGTGACT;-!NFE2L1::MafG#MA0089.1;0;0.0169708;8.0781;0.747711;6;GGTGACACATC;CATGAC;+!exd#MA0222.1;1;0.01732;8.24431;0.747711;7;GGTGACACATC;TTTTGACA;+!HAC1#MA0310.1;-3;0.01732;8.24431;0.747711;8;GGTGACACATC;GACACGTG;+
}}
}}

Latest revision as of 14:34, 7 September 2012

Full Name: GGTGACACAKC,motif113,CNhs13495,T:971.0(17.79%),B:8595.4(10.95%),P:1e-50

Motif matrix
POACGT
1163.12853.405568.035186.432
278.6518.739570.948312.662
33.8840.9710.971965.174
477.68135.94756.4090.971
5760.29396.12955.34759.231
618.449777.771102.92671.854
7671.932142.73739.811116.52
8305.865644.7443.88416.507
9572.8931.072327.22739.811
10145.65146.621278.677400.052
1133.014712.71493.216132.056

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFE2L2#MA0150.1-10.0002604130.1239560.14157510GGTGACACATCATGACTCAGCA+
CUP9#MA0288.1-20.0002981310.141910.1415759GGTGACACATCTGACACATT+
Six4#MA0204.1-20.0005931320.2823310.1877756GGTGACACATCTGATAC+
vis#MA0252.1-20.001371190.6526870.3255726GGTGACACATCTGACAG+
AP1#MA0099.2-20.002651891.26230.5037277GGTGACACATCTGACTCA+
GCN4#MA0303.150.003312451.576720.52433211GGTGACACATCTGAAGTATGACTCATCCCTTG-
Fos#MA0099.1-10.004808092.288650.5701128GGTGACACATCGTGAGTCA+
TOS8#MA0408.100.005079042.417620.5701128GGTGACACATCTTTGACAG-
STE12#MA0393.1-20.005402492.571590.5701127GGTGACACATCTGAAACA+
ESR1#MA0112.270.006090472.899060.5742111GGTGACACATCAGGTCAGGGTGACCTGGGCC-
ARG81#MA0272.1-10.00665053.165640.574218GGTGACACATCGTGACTCT+
achi#MA0207.1-20.008219583.912520.6005036GGTGACACATCTGACAG+
ARG80#MA0271.1-20.010244.874250.6946756GGTGACACATCAGACGC+
PPARG#MA0066.190.01120435.333260.7094211GGTGACACATCGTAGGTCACGGTGACCTACT+
hth#MA0227.1-20.01354526.447510.7477116GGTGACACATCTGACAG+
Foxa2#MA0047.210.01374336.541810.74771111GGTGACACATCTGTTTACTTAGG+
so#MA0246.1-20.01433046.821280.7477116GGTGACACATCTGATAC+
Pax2#MA0067.110.01651477.8610.7477117GGTGACACATCGCGTGACT-
NFE2L1::MafG#MA0089.100.01697088.07810.7477116GGTGACACATCCATGAC+
exd#MA0222.110.017328.244310.7477117GGTGACACATCTTTTGACA+
HAC1#MA0310.1-30.017328.244310.7477118GGTGACACATCGACACGTG+
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