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MacroAPE 1083:8-TCGGAGT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;140.026;2.642;821.662;1677.67!2;153.236;2221.922;2.642;264.2!3;2.642;2.642;2449.134;187.582!4;118.89;747.686;1772.782;2.642!5;2634.074;2.642...")
 
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6H5;0.95799!10827-111C8;0.93818!10789-110H6;0.801451!10828-111C9;0.630079!10788-110H5;0.803123!10792-110H9;0.846221!10765-110E9;0.598985!10829-111D1;0.960256!10830-111D2;0.933803!10831-111D3;0.752191!10832-111D4;0.999205!10833-111D5;0.996438!10764-110E8;0.8394!10770-110F5;0.718102!10399-106A3;0.543906!10400-106A4;0.914318!10405-106A9;0.94922!10834-111D6;0.789862!10835-111D7;0.9843!10836-111D8;0.903008!10837-111D9;0.904696!10699-109G6;0.981544!10802-111A1;0.898258!10796-110I4;0.990065!10010-101C1;0.670589!10810-111A9;0.875129!10421-106C7;0.296222!10708-109H6;0.6344!12235-129G3;0.836036!12236-129G4;0.595887!12237-129G5;0.645475!10167-103B5;0.811529!10151-102I7;0.109094!10428-106D5;0.13805!10795-110I3;0.351141!10805-111A4;0.952828!10052-101G7;0.582676!10189-103D9;0.913369!10589-108D4;0.720849!10425-106D2;0.444194!10427-106D4;0.252337!10702-109G9;0.72148!10432-106D9;0.0232687!10496-107C1;0.577691!10718-109I7;0.526043!10011-101C2;0.667829!10053-101G8;0.785257!10686-109F2;0.421887!10084-102B3;0.932091!10012-101C3;0.179057!10085-102B4;0.123356!10482-107A5;0.0457297!10419-106C5;0.668439!10080-102A8;0.432182!10760-110E4;0.786365!10709-109H7;0.722629!10710-109H8;0.704974!10703-109H1;0.694351!10719-109I8;0.150354!10642-109A3;0.138258!10177-103C6;0.0597286!10164-103B2;0.0966801!10173-103C2;0.093345!10166-103B4;0.0152052!10083-102B2;0.041709!10188-103D8;0.0582475!10552-107I3;0.266467!10553-107I4;0.800736!10013-101C4;0.523691!10536-107G5;0.665147!10618-108G6;0.298165!10423-106C9;0.15947!10785-110H2;0.452872!12238-129G6;0.513742!12239-129G7;0.35531!12240-129G8;0.568298!10416-106C2;0.317028!10801-110I9;0.391579!10766-110F1;0.904324!10824-111C5;0.654362!10825-111C6;0.78206!10826-111C7;0.678703!10454-106G4;0.796905!10409-106B4;0.972543!10638-108I8;0.880969!10636-108I6;0.881582!10513-107D9;0.253479!10420-106C6;0.641756!10082-102B1;0.3939!10014-101C5;0.995606!10070-101I7;0.748804!10452-106G2;0.599111!10453-106G3;0.865298!10449-106F8;0.908514!10042-101F6;0.994209!10069-101I6;0.163106!10193-103E4;0.562971!10631-108I1;0.0785293!10438-106E6;0.816379!10488-107B2;0.387573!10196-103E7;0.83388!10071-101I8;0.982268!10071-101I8;0.817749!10041-101F5;0.0623159!10451-106G1;0.885859!10450-106F9;0.289483!10604-108F1;0.191801!10605-108F2;0.133147!10606-108F3;0.421473!10603-108E9;0.103006!10497-107C2;0.275609!10448-106F7;0.211529!10643-109A4;0.400381!10426-106D3;0.627551!10431-106D8;0.554691!10197-103E8;0.447894!10443-106F2;0.625817!10815-111B5;0.441314!10816-111B6;0.957968!10817-111B7;0.849301!10015-101C6;0.963087!10410-106B5;0.794733!10054-101G9;0.298989!10758-110E2;0.992788!10711-109H9;0.90981!10040-101F4;0.308785!10470-106I2;0.111962!10415-106C1;0.208041!10198-103E9;0.168802!10614-108G2;0.809336!10612-108F9;0.869385!10549-107H9;0.8195!10615-108G3;0.462063!10487-107B1;0.0687363!10433-106E1;0.473576!10688-109F4;0.0785378!10444-106F3;0.589907!10444-106F3;0.214906!10485-107A8;0.133589!10413-106B8;0.693304!10175-103C4;0.305566!10161-103A8;0.0592684!12131-128D7;0.0776038!10624-108H3;0.417409!10712-109I1;0.607771!10205-103F7;0.608027!10206-103F8;0.815002!10207-103F9;0.724104!10050-101G5;0.979485!10051-101G6;0.490391!10016-101C7;0.318467!10046-101G1;0.535387!10778-110G4;0.995766!10633-108I3;0.304398!10818-111B8;0.292912!10819-111B9;0.916385!10820-111C1;0.999115!10484-107A7;0.86122!10808-111A7;0.171634!10169-103B7;0.423234!10153-102I9;0.078797!13425-144D5;0.149913!13433-144E4;0.261218!13437-144E8;0.202828!11904-125F5;0.35679!11905-125F6;0.698641!10039-101F3;0.783882!10791-110H8;0.110079!10017-101C8;0.923566!10045-101F9;0.869091!10509-107D5;0.446456!10839-111E2;0.304715!10692-109F8;0.524951!10079-102A7;0.120572!10078-102A6;0.559603!10721-110A1;0.373615!10569-108B2;0.392885!10570-108B3;0.169119!10571-108B4;0.270802!10647-109A8;0.247207!10752-110D5;0.0761624!10782-110G8;0.700371!10726-110A6;0.978139!10018-101C9;0.653626!10086-102B5;0.248661!10182-103D2;0.185469!10165-103B3;0.0898247!10499-107C4;0.10017!10408-106B3;0.882703!10019-101D1;0.224825!10068-101I5;0.896751!10075-102A3;0.738008!10077-102A5;0.7946!10727-110A7;0.919858!10775-110G1;0.910689!10412-106B7;0.901314!12231-129F8;0.163862!12232-129F9;0.811674!12233-129G1;0.853802!12234-129G2;0.845615!10414-106B9;0.601271!10170-103B8;0.158507!10183-103D3;0.0853608!10150-102I6;0.0823277!10174-103C3;0.125065!10155-103A2;0.197207!10038-101F2;0.215079!10838-111E1;0.24946!10759-110E3;0.141503!10514-107E1;0.113471!10465-106H6;0.667612!10691-109F7;0.985984!10843-111E6;0.409563!10844-111E7;0.140783!11747-123G1;0.0243449!11748-123G2;0.0672684!11749-123G3;0.0214431!11750-123G4;0.0548236!11751-123G5;0.0623927!11840-124H4;0.0432308!11752-123G6;0.153351!11753-123G7;0.0207285!11754-123G8;0.0810592!11755-123G9;0.0140795!11756-123H1;0.0465868!11833-124G6;0.48155!11760-123H5;0.585439!11836-124G9;0.477863!11758-123H3;0.626952!11835-124G8;0.154664!11762-123H7;0.416692!11838-124H2;0.264876!11757-123H2;0.648344!11759-123H4;0.111446!11761-123H6;0.0839063!11842-124H6;0.31708!11837-124H1;0.449599!10568-108B1;0.612959!13230-141I8;0.424038!13231-141I9;0.0435094!10696-109G3;0.0452464!10493-107B7;0.278892!10494-107B8;0.775278!10850-111F4;0.385669!10851-111F5;0.990557!10852-111F6;0.99888!10853-111F7;0.987144!10854-111F8;0.659931!10855-111F9;0.982105!10856-111G1;0.812714!10847-111F1;0.437013!10846-111E9;0.435352!10848-111F2;0.703979!10845-111E8;0.997554!10857-111G2;0.234782!10858-111G3;0.277507!10156-103A3;0.806859!11901-125F2;0.132502!11902-125F3;0.704228!11903-125F4;0.6768!10689-109F5;0.625009!10648-109A9;0.99406!10784-110H1;0.849042!10744-110C6;0.40073!10772-110F7;0.423085!10474-106I6;0.805446!10600-108E6;0.250545!10684-109E9;0.785781!12226-129F3;0.512583!12227-129F4;0.375809!10508-107D4;0.352509!10539-107G8;0.136566!10607-108F4;0.117975!10555-107I6;0.340377!10774-110F9;0.173305!10637-108I7;0.810278!10663-109C6;0.177678!10728-110A8;0.162077!10729-110A9;0.0958458!10430-106D7;0.10336!10730-110B1;0.816859!10813-111B3;0.30704!10812-111B2;0.139907!10037-101F1;0.305643!10172-103C1;0.108458!10163-103B1;0.0615025!10076-102A4;0.117254!10073-102A1;0.125251!10036-101E9;0.0458043!10195-103E6;0.153033!10277-104E7;0.137213!10434-106E2;0.110228!10550-107I1;0.983954!10545-107H5;0.40542!10544-107H4;0.648379!10704-109H2;0.7877!10510-107D6;0.600365!10558-107I9;0.0447655!10020-101D2;0.0934086!10732-110B3;0.679115!10049-101G4;0.575003!10698-109G5;0.95538!10437-106E5;0.315947!10417-106C3;0.491055!10035-101E8;0.631762!10171-103B9;0.119427!10157-103A4;0.0462543!10034-101E7;0.1195!10072-101I9;0.120359!10199-103F1;0.0419131!10200-103F2;0.731484!10697-109G4;0.763945!10723-110A3;0.0942637!10179-103C8;0.827932!10160-103A7;0.226066!10180-103C9;0.148595!10162-103A9;0.197778!10021-101D3;0.0916701!10840-111E3;0.892528!10706-109H4;0.875684!10033-101E6;0.809008!10032-101E5;0.115567!10490-107B4;0.142561!10439-106E7;0.726541!10022-101D4;0.310583!10176-103C5;0.662643!10469-106I1;0.0575012!10067-101I4;0.293427!10411-106B6;0.386512!10471-106I3;0.096621!10030-101E3;0.692748!10475-106I7;0.837928!10787-110H4;0.384359!10477-106I9;0.618676!10695-109G2;0.0154384!11771-123I7;0.627105!11772-123I8;0.53665!11773-123I9;0.806985!10093-102C3;0.0955536!10442-106F1;0.872245!10442-106F1;0.561427!10201-103F3;0.477793!10639-108I9;0.860866!11843-124H7;0.481409!11841-124H5;0.886258!10693-109F9;0.817145!10436-106E4;0.427912!10483-107A6;0.547204!10282-104F3;0.956742!10023-101D5;0.506986!10066-101I3;0.458692!10065-101I2;0.508566!10800-110I8;0.780872!10610-108F7;0.215332!10841-111E4;0.0418709!10541-107H1;0.351502!10842-111E5;0.136549!10562-108A4;0.14641!10024-101D6;0.0651017!10064-101I1;0.989589!10609-108F6;0.982236!10048-101G3;0.347686!10781-110G7;0.896243!10181-103D1;0.0377206!10159-103A6;0.16368!10056-101H2;0.144686!10737-110B8;0.344123!10025-101D7;0.167635!10044-101F8;0.553719!10424-106D1;0.833518!10463-106H4;0.80679!10616-108G4;0.381995!10486-107A9;0.641465!10062-101H8;0.821145!10202-103F4;0.733255!10158-103A5;0.791242!10441-106E9;0.17075!10031-101E4;0.180872!10063-101H9;0.172523!10063-101H9;0.0491317!11763-123H8;0.816051!11765-123I1;0.0187779!11768-123I4;0.0231548!10807-111A6;0.0160018!10790-110H7;0.204467!10798-110I6;0.172298!10786-110H3;0.385929!10591-108D6;0.615987!10593-108D8;0.428961!10590-108D5;0.0664151!10026-101D8;0.86789!10096-102C6;0.963629!10168-103B6;0.10321!10154-103A1;0.102686!10209-103G2;0.0932599!10061-101H7;0.496062!10027-101D9;0.893858!10043-101F7;0.536052!10783-110G9;0.536672!10028-101E1;0.855879!10060-101H6;0.934553!10203-103F5;0.994395!10059-101H5;0.475842!10047-101G2;0.500887!10029-101E2;0.798185!10058-101H4;0.865124!10418-106C4;0.68414!10492-107B6;0.0568749!10694-109G1;0.562221!10797-110I5;0.231957!10057-101H3;0.421413!10100-102D1;0.573321!10055-101H1;0.635886!10204-103F6;0.666501!10191-103E2;0.338527!10563-108A5;0.832514
|name=8-TCGGAGT,CNhs12321,BestGuess:MECP2_f1_HM09(0.592917130005684),T:2642.0(63.37%),B:24125.2(54.78%),P:1e-28
|name=8-TCGGAGT,CNhs12321,BestGuess:MECP2_f1_HM09(0.592917130005684),T:2642.0(63.37%),B:24125.2(54.78%),P:1e-28
|tomtom_result=YLR278C#MA0430.1;0;0.000172044;0.0818927;0.137982;7;TCGGAGT;CCGGAGTT;+!SUT2#MA0400.1;6;0.0002918;0.138897;0.137982;7;TCGGAGT;AAATTTTCGGAGTTTATCAT;-!YNR063W#MA0432.1;0;0.000606576;0.28873;0.191219;7;TCGGAGT;TCGGAGAT;+!YDR520C#MA0422.1;0;0.000866986;0.412685;0.192933;7;TCGGAGT;CCGGAGATAA;+!HAL9#MA0311.1;-1;0.0011231;0.534594;0.192933;5;TCGGAGT;CGGAA;+!HAP1#MA0312.1;-1;0.00122403;0.582637;0.192933;6;TCGGAGT;CGGAGATA;+!CHA4#MA0283.1;1;0.00210217;1.00063;0.254903;7;TCGGAGT;GGCGGAGA;+!OAF1#MA0348.1;0;0.00228644;1.08835;0.254903;7;TCGGAGT;TCGGAGATA;+!RGT1#MA0367.1;0;0.00242578;1.15467;0.254903;7;TCGGAGT;CCGGAAAAACT;-!CEP3#MA0282.1;1;0.00432758;2.05993;0.40347;7;TCGGAGT;CTCGGAAA;+!STB4#MA0391.1;1;0.00469286;2.2338;0.40347;6;TCGGAGT;CTCGGAA;+!YPR196W#MA0437.1;-1;0.00633129;3.01369;0.498973;6;TCGGAGT;CGGAGAAAT;-!STB5#MA0392.1;-1;0.00829687;3.94931;0.603584;6;TCGGAGT;CGGTGTTA;+!YRR1#MA0439.1;0;0.00981065;4.66987;0.61466;7;TCGGAGT;GCGGAGATAAG;-!SIP4#MA0380.1;1;0.00992706;4.72528;0.61466;6;TCGGAGT;TCCGGAG;-!LYS14#MA0325.1;0;0.0103989;4.94989;0.61466;7;TCGGAGT;CCGGAATT;+!PDR8#MA0354.1;0;0.0128761;6.12902;0.716311;7;TCGGAGT;GCGGAGAT;+!YKL222C#MA0428.1;1;0.0155972;7.42426;0.819484;7;TCGGAGT;AACGGAAAT;+!YBR239C#MA0420.1;1;0.017459;8.3105;0.869026;7;TCGGAGT;ACCGGAAC;+
}}
}}

Latest revision as of 14:42, 7 September 2012

Full Name: 8-TCGGAGT,CNhs12321,BestGuess:MECP2_f1_HM09(0.592917130005684),T:2642.0(63.37%),B:24125.2(54.78%),P:1e-28

Motif matrix
POACGT
1140.0262.642821.6621677.67
2153.2362221.9222.642264.2
32.6422.6422449.134187.582
4118.89747.6861772.7822.642
52634.0742.6422.6422.642
6626.154198.151305.148512.548
7565.388285.3362.6421788.634

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YLR278C#MA0430.100.0001720440.08189270.1379827TCGGAGTCCGGAGTT+
SUT2#MA0400.160.00029180.1388970.1379827TCGGAGTAAATTTTCGGAGTTTATCAT-
YNR063W#MA0432.100.0006065760.288730.1912197TCGGAGTTCGGAGAT+
YDR520C#MA0422.100.0008669860.4126850.1929337TCGGAGTCCGGAGATAA+
HAL9#MA0311.1-10.00112310.5345940.1929335TCGGAGTCGGAA+
HAP1#MA0312.1-10.001224030.5826370.1929336TCGGAGTCGGAGATA+
CHA4#MA0283.110.002102171.000630.2549037TCGGAGTGGCGGAGA+
OAF1#MA0348.100.002286441.088350.2549037TCGGAGTTCGGAGATA+
RGT1#MA0367.100.002425781.154670.2549037TCGGAGTCCGGAAAAACT-
CEP3#MA0282.110.004327582.059930.403477TCGGAGTCTCGGAAA+
STB4#MA0391.110.004692862.23380.403476TCGGAGTCTCGGAA+
YPR196W#MA0437.1-10.006331293.013690.4989736TCGGAGTCGGAGAAAT-
STB5#MA0392.1-10.008296873.949310.6035846TCGGAGTCGGTGTTA+
YRR1#MA0439.100.009810654.669870.614667TCGGAGTGCGGAGATAAG-
SIP4#MA0380.110.009927064.725280.614666TCGGAGTTCCGGAG-
LYS14#MA0325.100.01039894.949890.614667TCGGAGTCCGGAATT+
PDR8#MA0354.100.01287616.129020.7163117TCGGAGTGCGGAGAT+
YKL222C#MA0428.110.01559727.424260.8194847TCGGAGTAACGGAAAT+
YBR239C#MA0420.110.0174598.31050.8690267TCGGAGTACCGGAAC+
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