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MacroAPE 1083:7-GTKTGWCWC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;362.388;353.418;674.544;403.65!2;274.482;615.342;1.794;902.382!3;1.794;1.794;823.446;966.966!4;529.23;403.65;1.794;861.12!5;270.894;1.794;15...")
 
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8!10455-106G5;0.877846!10534-107G3;0.48231!10429-106D6;0.339504!10464-106H5;0.575413!10827-111C8;0.247523!10789-110H6;0.255742!10828-111C9;0.290058!10788-110H5;0.792381!10792-110H9;0.459543!10765-110E9;0.118051!10829-111D1;0.591845!10830-111D2;0.716428!10831-111D3;0.332733!10832-111D4;0.215419!10833-111D5;0.707245!10764-110E8;0.441198!10770-110F5;0.688937!10399-106A3;0.162733!10400-106A4;0.276827!10405-106A9;0.243187!10834-111D6;0.387144!10835-111D7;0.271767!10836-111D8;0.996568!10837-111D9;0.299568!10699-109G6;0.0910683!10802-111A1;0.161366!10796-110I4;0.299166!10010-101C1;0.701836!10810-111A9;0.862058!10421-106C7;0.138169!10708-109H6;0.602703!12235-129G3;0.923093!12236-129G4;0.178403!12237-129G5;0.29436!10167-103B5;0.464327!10151-102I7;0.577634!10428-106D5;0.39627!10795-110I3;0.53775!10805-111A4;0.716411!10052-101G7;0.138634!10189-103D9;0.719!10589-108D4;0.345652!10425-106D2;0.693045!10427-106D4;0.262615!10702-109G9;0.950889!10432-106D9;0.592949!10496-107C1;0.417615!10718-109I7;0.241919!10011-101C2;0.60178!10053-101G8;0.724453!10686-109F2;0.309664!10084-102B3;0.748071!10012-101C3;0.344184!10085-102B4;0.362719!10482-107A5;0.331391!10419-106C5;0.675785!10080-102A8;0.230309!10760-110E4;0.421254!10709-109H7;0.139251!10710-109H8;0.236783!10703-109H1;0.329533!10719-109I8;0.751302!10642-109A3;0.701749!10177-103C6;0.430474!10164-103B2;0.829131!10173-103C2;0.486257!10166-103B4;0.573599!10083-102B2;0.516144!10188-103D8;0.375303!10552-107I3;0.444507!10553-107I4;0.67604!10013-101C4;0.0486797!10536-107G5;0.890442!10618-108G6;0.457992!10423-106C9;0.883182!10785-110H2;0.692837!12238-129G6;0.773898!12239-129G7;0.285562!12240-129G8;0.938044!10416-106C2;0.487483!10801-110I9;0.0710162!10766-110F1;0.211668!10824-111C5;0.57382!10825-111C6;0.600525!10826-111C7;0.583725!10454-106G4;0.679761!10409-106B4;0.760637!10638-108I8;0.553018!10636-108I6;0.294792!10513-107D9;0.453729!10420-106C6;0.671961!10082-102B1;0.870112!10014-101C5;0.230559!10070-101I7;0.59262!10452-106G2;0.297755!10453-106G3;0.198536!10449-106F8;0.763346!10042-101F6;0.970527!10069-101I6;0.40325!10193-103E4;0.525662!10631-108I1;0.319101!10438-106E6;0.504889!10488-107B2;0.343248!10196-103E7;0.876308!10071-101I8;0.754636!10071-101I8;0.720108!10041-101F5;0.390233!10451-106G1;0.893514!10450-106F9;0.247973!10604-108F1;0.630247!10605-108F2;0.750982!10606-108F3;0.980019!10603-108E9;0.412203!10497-107C2;0.703401!10448-106F7;0.885017!10643-109A4;0.0154981!10426-106D3;0.651727!10431-106D8;0.507055!10197-103E8;0.366937!10443-106F2;0.500966!10815-111B5;0.757575!10816-111B6;0.914998!10817-111B7;0.681705!10015-101C6;0.975046!10410-106B5;0.788461!10054-101G9;0.71238!10758-110E2;0.741508!10711-109H9;0.798425!10040-101F4;0.88228!10470-106I2;0.406397!10415-106C1;0.517104!10198-103E9;0.735558!10614-108G2;0.907476!10612-108F9;0.543235!10549-107H9;0.282604!10615-108G3;0.428949!10487-107B1;0.335154!10433-106E1;0.0817194!10688-109F4;0.755713!10444-106F3;0.703545!10444-106F3;0.252815!10485-107A8;0.220596!10413-106B8;0.488066!10175-103C4;0.825953!10161-103A8;0.558071!12131-128D7;0.340705!10624-108H3;0.354046!10712-109I1;0.288173!10205-103F7;0.859195!10206-103F8;0.918806!10207-103F9;0.552301!10050-101G5;0.299098!10051-101G6;0.698336!10016-101C7;0.751495!10046-101G1;0.859102!10778-110G4;0.966608!10633-108I3;0.903144!10818-111B8;0.0695662!10819-111B9;0.570714!10820-111C1;0.615255!10484-107A7;0.647652!10808-111A7;0.196008!10169-103B7;0.514293!10153-102I9;0.532923!13425-144D5;0.37094!13433-144E4;0.23483!13437-144E8;0.110371!11904-125F5;0.12293!11905-125F6;0.00641788!10039-101F3;0.000339393!10791-110H8;0.444895!10017-101C8;0.877475!10045-101F9;0.760167!10509-107D5;0.641612!10839-111E2;0.195385!10692-109F8;0.693271!10079-102A7;0.843149!10078-102A6;0.481731!10721-110A1;0.703669!10569-108B2;0.302554!10570-108B3;0.9684!10571-108B4;0.851555!10647-109A8;0.898156!10752-110D5;0.749114!10782-110G8;0.975871!10726-110A6;0.369262!10018-101C9;0.239538!10086-102B5;0.869085!10182-103D2;0.659831!10165-103B3;0.518535!10499-107C4;0.450609!10408-106B3;0.0776513!10019-101D1;0.841376!10068-101I5;0.630405!10075-102A3;0.388935!10077-102A5;0.842332!10727-110A7;0.806293!10775-110G1;0.988725!10412-106B7;0.40537!12231-129F8;0.730355!12232-129F9;0.265605!12233-129G1;0.250491!12234-129G2;0.334546!10414-106B9;0.177143!10170-103B8;0.347399!10183-103D3;0.428677!10150-102I6;0.429067!10174-103C3;0.37617!10155-103A2;0.696047!10038-101F2;0.486101!10838-111E1;0.578902!10759-110E3;0.903061!10514-107E1;0.835732!10465-106H6;0.326904!10691-109F7;0.732466!10843-111E6;0.613037!10844-111E7;0.436799!11747-123G1;0.827601!11748-123G2;0.859264!11749-123G3;0.481419!11750-123G4;0.392825!11751-123G5;0.516321!11840-124H4;0.939922!11752-123G6;0.68006!11753-123G7;0.0501058!11754-123G8;0.158289!11755-123G9;0.416036!11756-123H1;0.925574!11833-124G6;0.86129!11760-123H5;0.122431!11836-124G9;0.9918!11758-123H3;0.104289!11835-124G8;0.71624!11762-123H7;0.738899!11838-124H2;0.486325!11757-123H2;0.886592!11759-123H4;0.778779!11761-123H6;0.455649!11842-124H6;0.771674!11837-124H1;0.0883079!10568-108B1;0.405415!13230-141I8;0.0418389!13231-141I9;0.678985!10696-109G3;0.675594!10493-107B7;0.443372!10494-107B8;0.690738!10850-111F4;0.0224205!10851-111F5;0.452102!10852-111F6;0.193413!10853-111F7;0.198!10854-111F8;0.410204!10855-111F9;0.430206!10856-111G1;0.00632625!10847-111F1;0.29537!10846-111E9;0.186476!10848-111F2;0.319613!10845-111E8;0.263369!10857-111G2;0.968827!10858-111G3;0.786697!10156-103A3;0.58882!11901-125F2;0.336974!11902-125F3;0.43676!11903-125F4;0.540503!10689-109F5;0.938687!10648-109A9;0.40423!10784-110H1;0.627143!10744-110C6;0.836088!10772-110F7;0.781752!10474-106I6;0.268857!10600-108E6;0.921202!10684-109E9;0.635367!12226-129F3;0.0543356!12227-129F4;0.260995!10508-107D4;0.479436!10539-107G8;0.781355!10607-108F4;0.533913!10555-107I6;0.780321!10774-110F9;0.811629!10637-108I7;0.992626!10663-109C6;0.663561!10728-110A8;0.5046!10729-110A9;0.883004!10430-106D7;0.97051!10730-110B1;0.783888!10813-111B3;0.738963!10812-111B2;0.173845!10037-101F1;0.399436!10172-103C1;0.523842!10163-103B1;0.41493!10076-102A4;0.322492!10073-102A1;0.379414!10036-101E9;0.452756!10195-103E6;0.442008!10277-104E7;0.349194!10434-106E2;0.517201!10550-107I1;0.618154!10545-107H5;0.81891!10544-107H4;0.240393!10704-109H2;0.656486!10510-107D6;0.26874!10558-107I9;0.290425!10020-101D2;0.299816!10732-110B3;0.702672!10049-101G4;0.423714!10698-109G5;0.554105!10437-106E5;0.892526!10417-106C3;0.507172!10035-101E8;0.132096!10171-103B9;0.424805!10157-103A4;0.482337!10034-101E7;0.360597!10072-101I9;0.463177!10199-103F1;0.514966!10200-103F2;0.345415!10697-109G4;0.730046!10723-110A3;0.472091!10179-103C8;0.914036!10160-103A7;0.967595!10180-103C9;0.547022!10162-103A9;0.870338!10021-101D3;0.90972!10840-111E3;0.614616!10706-109H4;0.93844!10033-101E6;0.280815!10032-101E5;0.385388!10490-107B4;0.405987!10439-106E7;0.444108!10022-101D4;0.987339!10176-103C5;0.959306!10469-106I1;0.640879!10067-101I4;0.0182487!10411-106B6;0.168438!10471-106I3;0.832894!10030-101E3;0.431131!10475-106I7;0.691294!10787-110H4;0.478993!10477-106I9;0.177872!10695-109G2;0.568851!11771-123I7;0.324429!11772-123I8;0.647758!11773-123I9;0.369174!10093-102C3;0.236352!10442-106F1;0.636003!10442-106F1;0.555377!10201-103F3;0.386984!10639-108I9;0.847436!11843-124H7;0.262638!11841-124H5;0.201647!10693-109F9;0.747533!10436-106E4;0.104816!10483-107A6;0.924602!10282-104F3;0.376151!10023-101D5;0.789539!10066-101I3;0.589285!10065-101I2;0.491109!10800-110I8;0.598498!10610-108F7;0.676542!10841-111E4;0.622163!10541-107H1;0.829503!10842-111E5;0.324828!10562-108A4;0.961667!10024-101D6;0.118269!10064-101I1;0.584462!10609-108F6;0.201011!10048-101G3;0.447052!10781-110G7;0.756037!10181-103D1;0.384055!10159-103A6;0.443383!10056-101H2;0.460146!10737-110B8;0.312621!10025-101D7;0.881264!10044-101F8;0.588778!10424-106D1;0.488536!10463-106H4;0.631409!10616-108G4;0.847715!10486-107A9;0.20392!10062-101H8;0.213158!10202-103F4;0.792593!10158-103A5;0.38284!10441-106E9;0.406323!10031-101E4;0.92133!10063-101H9;0.467996!10063-101H9;0.4211!11763-123H8;0.594667!11765-123I1;0.211908!11768-123I4;0.404937!10807-111A6;0.395708!10790-110H7;0.0578478!10798-110I6;0.488601!10786-110H3;0.359793!10591-108D6;0.975369!10593-108D8;0.876263!10590-108D5;0.329483!10026-101D8;0.404647!10096-102C6;0.996994!10168-103B6;0.539026!10154-103A1;0.667882!10209-103G2;0.41686!10061-101H7;0.77819!10027-101D9;0.454197!10043-101F7;0.123286!10783-110G9;0.898677!10028-101E1;0.896924!10060-101H6;0.690676!10203-103F5;0.825073!10059-101H5;0.747225!10047-101G2;0.562326!10029-101E2;0.877684!10058-101H4;0.794773!10418-106C4;0.610883!10492-107B6;0.798241!10694-109G1;0.995448!10797-110I5;0.0968015!10057-101H3;0.000476807!10100-102D1;0.714594!10055-101H1;0.72554!10204-103F6;0.64343!10191-103E2;0.325148!10563-108A5;0.420422
|name=7-GTKTGWCWC,CNhs10854,BestGuess:SMRC1_f1_HM09(0.670836627198942),T:1794.0(46.06%),B:14293.9(33.10%),P:1e-62
|name=7-GTKTGWCWC,CNhs10854,BestGuess:SMRC1_f1_HM09(0.670836627198942),T:1794.0(46.06%),B:14293.9(33.10%),P:1e-62
|tomtom_result=ARG80#MA0271.1;-3;0.000289269;0.137692;0.275314;6;GTTTGTCAC;AGACGC;+!ARG81#MA0272.1;-2;0.00324163;1.54302;0.773145;7;GTTTGTCAC;GTGACTCT;+!BAS1#MA0278.1;3;0.00347693;1.65502;0.773145;9;GTTTGTCAC;TTGACTTGACTCTGGCTGTGC;-!Pax2#MA0067.1;-3;0.00387119;1.84269;0.773145;6;GTTTGTCAC;AGTCACGG;+!AP1#MA0099.2;-3;0.00406166;1.93335;0.773145;6;GTTTGTCAC;TGACTCA;+!CUP9#MA0288.1;-3;0.0086616;4.12292;0.999747;6;GTTTGTCAC;TGACACATT;+!TOS8#MA0408.1;-1;0.0112404;5.35043;0.999747;8;GTTTGTCAC;TTTGACAG;-!NFE2L2#MA0150.1;2;0.0113402;5.39794;0.999747;9;GTTTGTCAC;TGCTGAGTCAT;-!Fos#MA0099.1;-1;0.0161631;7.69365;0.999747;8;GTTTGTCAC;TGACTCAC;-!Six4#MA0204.1;-3;0.0168431;8.01733;0.999747;6;GTTTGTCAC;TGATAC;+!exd#MA0222.1;0;0.0173493;8.25826;0.999747;8;GTTTGTCAC;TTTTGACA;+!GCN4#MA0303.1;4;0.0196318;9.34471;0.999747;9;GTTTGTCAC;TGAAGTATGACTCATCCCTTG;-
}}
}}

Latest revision as of 14:42, 7 September 2012

Full Name: 7-GTKTGWCWC,CNhs10854,BestGuess:SMRC1_f1_HM09(0.670836627198942),T:1794.0(46.06%),B:14293.9(33.10%),P:1e-62

Motif matrix
POACGT
1362.388353.418674.544403.65
2274.482615.3421.794902.382
31.7941.794823.446966.966
4529.23403.651.794861.12
5270.8941.7941519.5181.794
6785.772154.2841.794852.15
71.7941573.338217.0741.794
8748.0981.794340.86703.248
91.7941788.6181.7941.794

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

ARG80#MA0271.1-30.0002892690.1376920.2753146GTTTGTCACAGACGC+
ARG81#MA0272.1-20.003241631.543020.7731457GTTTGTCACGTGACTCT+
BAS1#MA0278.130.003476931.655020.7731459GTTTGTCACTTGACTTGACTCTGGCTGTGC-
Pax2#MA0067.1-30.003871191.842690.7731456GTTTGTCACAGTCACGG+
AP1#MA0099.2-30.004061661.933350.7731456GTTTGTCACTGACTCA+
CUP9#MA0288.1-30.00866164.122920.9997476GTTTGTCACTGACACATT+
TOS8#MA0408.1-10.01124045.350430.9997478GTTTGTCACTTTGACAG-
NFE2L2#MA0150.120.01134025.397940.9997479GTTTGTCACTGCTGAGTCAT-
Fos#MA0099.1-10.01616317.693650.9997478GTTTGTCACTGACTCAC-
Six4#MA0204.1-30.01684318.017330.9997476GTTTGTCACTGATAC+
exd#MA0222.100.01734938.258260.9997478GTTTGTCACTTTTGACA+
GCN4#MA0303.140.01963189.344710.9997479GTTTGTCACTGAAGTATGACTCATCCCTTG-