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MacroAPE 1083:ATF5 si: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;8.03360655737706;1.9745901639344263;3.164754098360656;19.827049180327883!2;29.213114754098353;0.865573770491803;0.9737704918032796;1.9475409...")
 
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107G3;0.29327!10429-106D6;0.241266!10464-106H5;0.616253!10827-111C8;0.474732!10789-110H6;0.307538!10828-111C9;0.699636!10788-110H5;0.414767!10792-110H9;0.320339!10765-110E9;0.567189!10829-111D1;0.443846!10830-111D2;0.105637!10831-111D3;0.464459!10832-111D4;0.333589!10833-111D5;0.143907!10764-110E8;0.280936!10770-110F5;0.515176!10399-106A3;0.64346!10400-106A4;0.475215!10405-106A9;0.56694!10834-111D6;0.544902!10835-111D7;0.328511!10836-111D8;0.784426!10837-111D9;0.907017!10699-109G6;0.957226!10802-111A1;0.350583!10796-110I4;0.951548!10010-101C1;0.808758!10810-111A9;0.972937!10421-106C7;0.732928!10708-109H6;0.821637!12235-129G3;0.864123!12236-129G4;0.196708!12237-129G5;0.592599!10167-103B5;0.867477!10151-102I7;0.79547!10428-106D5;0.75042!10795-110I3;0.633862!10805-111A4;0.98148!10052-101G7;0.658716!10189-103D9;0.842595!10589-108D4;0.381485!10425-106D2;0.82733!10427-106D4;0.236777!10702-109G9;0.0525128!10432-106D9;0.374396!10496-107C1;0.441058!10718-109I7;0.858932!10011-101C2;0.27937!10053-101G8;0.875772!10686-109F2;0.469027!10084-102B3;0.122306!10012-101C3;0.99161!10085-102B4;0.930384!10482-107A5;0.910552!10419-106C5;0.391968!10080-102A8;0.528796!10760-110E4;0.782384!10709-109H7;0.523548!10710-109H8;0.382691!10703-109H1;0.871593!10719-109I8;0.663927!10642-109A3;0.460137!10177-103C6;0.531495!10164-103B2;0.704076!10173-103C2;0.641891!10166-103B4;0.695692!10083-102B2;0.753191!10188-103D8;0.846931!10552-107I3;0.846805!10553-107I4;0.688898!10013-101C4;0.616635!10536-107G5;0.899501!10618-108G6;0.322138!10423-106C9;0.992508!10785-110H2;0.812522!12238-129G6;0.6209!12239-129G7;0.179382!12240-129G8;0.0172253!10416-106C2;0.36305!10801-110I9;0.294061!10766-110F1;0.326017!10824-111C5;0.317308!10825-111C6;0.542887!10826-111C7;0.604435!10454-106G4;0.395437!10409-106B4;0.584256!10638-108I8;0.30078!10636-108I6;0.758514!10513-107D9;0.221197!10420-106C6;0.568958!10082-102B1;0.746242!10014-101C5;0.837196!10070-101I7;0.985072!10452-106G2;0.975034!10453-106G3;0.543081!10449-106F8;0.710311!10042-101F6;0.574535!10069-101I6;0.615555!10193-103E4;0.563439!10631-108I1;0.918711!10438-106E6;0.169055!10488-107B2;0.399076!10196-103E7;0.604194!10071-101I8;0.755903!10071-101I8;0.538169!10041-101F5;0.920877!10451-106G1;0.780991!10450-106F9;0.686021!10604-108F1;0.577507!10605-108F2;0.406798!10606-108F3;0.925994!10603-108E9;0.773827!10497-107C2;0.457581!10448-106F7;0.972037!10643-109A4;0.657963!10426-106D3;0.851728!10431-106D8;0.912029!10197-103E8;0.690895!10443-106F2;0.832202!10815-111B5;0.19931!10816-111B6;0.680115!10817-111B7;0.7318!10015-101C6;0.613866!10410-106B5;0.917687!10054-101G9;0.677885!10758-110E2;0.703146!10711-109H9;0.255255!10040-101F4;0.464066!10470-106I2;0.98821!10415-106C1;0.819565!10198-103E9;0.613437!10614-108G2;0.80259!10612-108F9;0.455751!10549-107H9;0.955131!10615-108G3;0.881398!10487-107B1;0.308109!10433-106E1;0.721431!10688-109F4;0.878112!10444-106F3;0.761561!10444-106F3;0.033266!10485-107A8;0.0314339!10413-106B8;0.0704542!10175-103C4;0.456747!10161-103A8;0.712677!12131-128D7;0.487838!10624-108H3;0.406926!10712-109I1;0.295186!10205-103F7;0.151651!10206-103F8;0.339699!10207-103F9;0.374187!10050-101G5;0.573747!10051-101G6;0.260426!10016-101C7;0.0800217!10046-101G1;0.107513!10778-110G4;0.429243!10633-108I3;0.0985321!10818-111B8;0.45632!10819-111B9;0.504933!10820-111C1;0.597061!10484-107A7;0.573906!10808-111A7;0.128117!10169-103B7;0.1824!10153-102I9;0.974401!13425-144D5;0.68669!13433-144E4;0.438389!13437-144E8;0.478464!11904-125F5;0.420565!11905-125F6;0.0902286!10039-101F3;0.146311!10791-110H8;0.967027!10017-101C8;0.754466!10045-101F9;0.613803!10509-107D5;0.377481!10839-111E2;0.66746!10692-109F8;0.373296!10079-102A7;0.447767!10078-102A6;0.787073!10721-110A1;0.119289!10569-108B2;0.973801!10570-108B3;0.182522!10571-108B4;0.159796!10647-109A8;0.045325!10752-110D5;0.134373!10782-110G8;0.308073!10726-110A6;0.0744373!10018-101C9;0.202705!10086-102B5;0.491751!10182-103D2;0.775618!10165-103B3;0.680943!10499-107C4;0.649696!10408-106B3;0.769263!10019-101D1;0.924967!10068-101I5;0.914972!10075-102A3;0.97841!10077-102A5;0.611738!10727-110A7;0.613992!10775-110G1;0.144522!10412-106B7;0.0987005!12231-129F8;0.802799!12232-129F9;0.967026!12233-129G1;0.795589!12234-129G2;0.863637!10414-106B9;0.814062!10170-103B8;0.413339!10183-103D3;0.971475!10150-102I6;0.9946!10174-103C3;0.842734!10155-103A2;0.576765!10038-101F2;0.478659!10838-111E1;0.777916!10759-110E3;0.937105!10514-107E1;0.775045!10465-106H6;0.988704!10691-109F7;0.607161!10843-111E6;0.0200825!10844-111E7;0.516826!11747-123G1;0.786515!11748-123G2;0.0342022!11749-123G3;0.0447671!11750-123G4;0.216707!11751-123G5;0.324003!11840-124H4;0.429445!11752-123G6;0.0436211!11753-123G7;0.013548!11754-123G8;0.388491!11755-123G9;0.102965!11756-123H1;0.219687!11833-124G6;0.307154!11760-123H5;0.218418!11836-124G9;0.228621!11758-123H3;0.00104251!11835-124G8;0.0186678!11762-123H7;0.22502!11838-124H2;0.420451!11757-123H2;0.482699!11759-123H4;0.638587!11761-123H6;0.351859!11842-124H6;0.361944!11837-124H1;0.101544!10568-108B1;0.536268!13230-141I8;0.370902!13231-141I9;0.0125937!10696-109G3;0.0472208!10493-107B7;0.0599869!10494-107B8;0.830285!10850-111F4;0.477829!10851-111F5;0.32896!10852-111F6;0.558394!10853-111F7;0.918818!10854-111F8;0.993761!10855-111F9;0.575723!10856-111G1;0.250127!10847-111F1;0.61331!10846-111E9;0.223664!10848-111F2;0.819499!10845-111E8;0.760704!10857-111G2;0.495072!10858-111G3;0.266603!10156-103A3;0.414919!11901-125F2;0.860162!11902-125F3;0.134038!11903-125F4;0.306438!10689-109F5;0.144563!10648-109A9;0.467007!10784-110H1;0.628477!10744-110C6;0.458493!10772-110F7;0.753895!10474-106I6;0.673736!10600-108E6;0.147324!10684-109E9;0.206481!12226-129F3;0.400786!12227-129F4;0.770178!10508-107D4;0.676897!10539-107G8;0.919307!10607-108F4;0.790489!10555-107I6;0.596055!10774-110F9;0.874503!10637-108I7;0.929357!10663-109C6;0.972609!10728-110A8;0.86069!10729-110A9;0.376988!10430-106D7;0.019785!10730-110B1;0.437792!10813-111B3;0.677837!10812-111B2;0.825211!10037-101F1;0.146828!10172-103C1;0.962126!10163-103B1;0.787049!10076-102A4;0.831955!10073-102A1;0.882952!10036-101E9;0.891676!10195-103E6;0.858549!10277-104E7;0.981605!10434-106E2;0.89774!10550-107I1;0.953831!10545-107H5;0.764272!10544-107H4;0.789206!10704-109H2;0.865086!10510-107D6;0.0344136!10558-107I9;0.22906!10020-101D2;0.377587!10732-110B3;0.975572!10049-101G4;0.269954!10698-109G5;0.286532!10437-106E5;0.969671!10417-106C3;0.692541!10035-101E8;0.183141!10171-103B9;0.917592!10157-103A4;0.890588!10034-101E7;0.836441!10072-101I9;0.949711!10199-103F1;0.749041!10200-103F2;0.824614!10697-109G4;0.604447!10723-110A3;0.862249!10179-103C8;0.198267!10160-103A7;0.668123!10180-103C9;0.243302!10162-103A9;0.574295!10021-101D3;0.766771!10840-111E3;0.44338!10706-109H4;0.0960704!10033-101E6;0.181168!10032-101E5;0.785198!10490-107B4;0.865724!10439-106E7;0.65859!10022-101D4;0.550641!10176-103C5;0.851274!10469-106I1;0.654834!10067-101I4;0.617651!10411-106B6;0.983745!10471-106I3;0.3624!10030-101E3;0.952276!10475-106I7;0.799534!10787-110H4;0.935304!10477-106I9;0.714989!10695-109G2;0.528993!11771-123I7;0.0130735!11772-123I8;0.820873!11773-123I9;0.81206!10093-102C3;0.948274!10442-106F1;0.880452!10442-106F1;0.490193!10201-103F3;0.480695!10639-108I9;0.984088!11843-124H7;0.399781!11841-124H5;0.0990079!10693-109F9;0.270785!10436-106E4;0.983196!10483-107A6;0.50342!10282-104F3;0.473086!10023-101D5;0.923365!10066-101I3;0.592171!10065-101I2;0.455197!10800-110I8;0.533993!10610-108F7;0.241214!10841-111E4;0.55401!10541-107H1;0.646187!10842-111E5;0.460259!10562-108A4;0.929128!10024-101D6;0.991387!10064-101I1;0.611944!10609-108F6;0.548211!10048-101G3;0.469715!10781-110G7;0.832123!10181-103D1;0.679738!10159-103A6;0.60411!10056-101H2;0.437524!10737-110B8;0.792885!10025-101D7;0.00580546!10044-101F8;0.79065!10424-106D1;0.77835!10463-106H4;0.237283!10616-108G4;0.979249!10486-107A9;0.661268!10062-101H8;0.831973!10202-103F4;0.782464!10158-103A5;0.804957!10441-106E9;0.441751!10031-101E4;0.633504!10063-101H9;0.852057!10063-101H9;0.94424!11763-123H8;0.944925!11765-123I1;0.0234197!11768-123I4;0.0158802!10807-111A6;0.0807704!10790-110H7;0.516389!10798-110I6;0.957992!10786-110H3;0.880114!10591-108D6;0.592195!10593-108D8;0.355005!10590-108D5;0.263452!10026-101D8;0.388494!10096-102C6;0.843295!10168-103B6;0.992387!10154-103A1;0.75212!10209-103G2;0.568972!10061-101H7;0.708519!10027-101D9;0.602194!10043-101F7;0.428221!10783-110G9;0.45401!10028-101E1;0.612902!10060-101H6;0.64141!10203-103F5;0.916926!10059-101H5;0.841314!10047-101G2;0.91276!10029-101E2;0.630224!10058-101H4;0.893243!10418-106C4;0.450827!10492-107B6;0.579311!10694-109G1;0.436304!10797-110I5;0.0446369!10057-101H3;0.384208!10100-102D1;0.763368!10055-101H1;0.942286!10204-103F6;0.482532!10191-103E2;0.792383!10563-108A5;0.946889
|name=ATF5_si
|name=ATF5_si
|tomtom_result=ELF5#MA0136.1;-1;0.00257949;1.22784;1;9;TAAGGAAGAAGG;AAGGAAGTA;-!SPI1#MA0080.2;-2;0.00260791;1.24137;1;7;TAAGGAAGAAGG;AGGAAGT;+!id1#MA0120.1;3;0.00511068;2.43268;1;9;TAAGGAAGAAGG;CGAAAAGGAAAA;-!Klf4#MA0039.1;0;0.00575583;2.73977;1;10;TAAGGAAGAAGG;TAAAGGAAGG;+!SPI1#MA0080.2;-2;0.00598017;2.84656;1;6;TAAGGAAGAAGG;CGGAAG;+!PPARG::RXRA#MA0065.2;1;0.00737655;3.51124;1;12;TAAGGAAGAAGG;GTAGGGCAAAGGTCA;+!GCR2#MA0305.1;-2;0.00829764;3.94968;1;7;TAAGGAAGAAGG;AGGAAGC;-!ETS1#MA0098.1;-2;0.0093507;4.45093;1;6;TAAGGAAGAAGG;CGGAAA;-!RXR::RAR_DR5#MA0159.1;3;0.0107226;5.10396;1;12;TAAGGAAGAAGG;AGGTCATGGAGAGGTCA;+!HSF1#MA0319.1;-1;0.01156;5.50255;1;8;TAAGGAAGAAGG;ATGGAACA;+!Trl#MA0205.1;-1;0.0143288;6.82051;1;10;TAAGGAAGAAGG;GAGAGAGCAA;-!SFL1#MA0377.1;5;0.0145043;6.90404;1;12;TAAGGAAGAAGG;TAGAGAATAGAAGAAATAAAA;+!USV1#MA0413.1;7;0.018378;8.74792;1;12;TAAGGAAGAAGG;CACAAATTCAGGGGGAATTT;-
}}
}}

Latest revision as of 14:53, 7 September 2012

Full Name: ATF5_si

Motif matrix
POACGT
18.033606557377061.97459016393442633.16475409836065619.827049180327883
229.2131147540983530.8655737704918030.97377049180327961.9475409836065556
330.186885245901650.00.02.8131147540983616
40.00.031.0524590163934421.9475409836065556
50.97377049180327960.032.026229508196710.0
616.6622950819672050.86557377049180312.6590163934426182.8131147540983616
728.1311475409835870.97377049180327960.97377049180327962.921311475409835
80.8655737704918030.86557377049180331.2688524590163830.0
933.00.00.00.0
1014.3901639344262353.895081967213118313.7409836065573840.9737704918032796
116.708196721311470.973770491803279620.4491803278688564.868852459016382
125.3827868852459124.409016393442616514.1467213114754129.061475409836058

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

ELF5#MA0136.1-10.002579491.2278419TAAGGAAGAAGGAAGGAAGTA-
SPI1#MA0080.2-20.002607911.2413717TAAGGAAGAAGGAGGAAGT+
id1#MA0120.130.005110682.4326819TAAGGAAGAAGGCGAAAAGGAAAA-
Klf4#MA0039.100.005755832.73977110TAAGGAAGAAGGTAAAGGAAGG+
SPI1#MA0080.2-20.005980172.8465616TAAGGAAGAAGGCGGAAG+
PPARG::RXRA#MA0065.210.007376553.51124112TAAGGAAGAAGGGTAGGGCAAAGGTCA+
GCR2#MA0305.1-20.008297643.9496817TAAGGAAGAAGGAGGAAGC-
ETS1#MA0098.1-20.00935074.4509316TAAGGAAGAAGGCGGAAA-
RXR::RAR_DR5#MA0159.130.01072265.10396112TAAGGAAGAAGGAGGTCATGGAGAGGTCA+
HSF1#MA0319.1-10.011565.5025518TAAGGAAGAAGGATGGAACA+
Trl#MA0205.1-10.01432886.82051110TAAGGAAGAAGGGAGAGAGCAA-
SFL1#MA0377.150.01450436.90404112TAAGGAAGAAGGTAGAGAATAGAAGAAATAAAA+
USV1#MA0413.170.0183788.74792112TAAGGAAGAAGGCACAAATTCAGGGGGAATTT-