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MacroAPE 1083:AAACTATA,motif684: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;937.56;123.806;45.676;94.958!2;828.178;76.928;193.522;103.372!3;950.782;78.13;131.018;42.07!4;39.666;933.954;163.472;64.908!5;86.544;76.928;...")
 
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0H6;0.143464!10828-111C9;0.169391!10788-110H5;0.270251!10792-110H9;0.256931!10765-110E9;0.0832053!10829-111D1;0.230726!10830-111D2;0.103054!10831-111D3;0.132309!10832-111D4;0.0268811!10833-111D5;0.322227!10764-110E8;0.272563!10770-110F5;0.736651!10399-106A3;0.533497!10400-106A4;0.394917!10405-106A9;0.431287!10834-111D6;0.405411!10835-111D7;0.154291!10836-111D8;0.170541!10837-111D9;0.273765!10699-109G6;0.0935476!10802-111A1;0.0706253!10796-110I4;0.355824!10010-101C1;0.905634!10810-111A9;0.14007!10421-106C7;0.0577327!10708-109H6;0.257133!12235-129G3;0.213003!12236-129G4;0.327901!12237-129G5;0.06124!10167-103B5;0.296191!10151-102I7;0.105145!10428-106D5;0.0929097!10795-110I3;0.433492!10805-111A4;0.31869!10052-101G7;0.967596!10189-103D9;0.0245889!10589-108D4;0.143208!10425-106D2;0.537284!10427-106D4;0.0910696!10702-109G9;0.207528!10432-106D9;0.658694!10496-107C1;0.567716!10718-109I7;0.831269!10011-101C2;0.258638!10053-101G8;0.0954675!10686-109F2;0.924932!10084-102B3;0.629935!10012-101C3;0.103173!10085-102B4;0.137678!10482-107A5;0.0661146!10419-106C5;0.219513!10080-102A8;0.0842426!10760-110E4;0.00881505!10709-109H7;0.349655!10710-109H8;0.752742!10703-109H1;0.193071!10719-109I8;0.18042!10642-109A3;0.500557!10177-103C6;0.819771!10164-103B2;0.258787!10173-103C2;0.272503!10166-103B4;0.201767!10083-102B2;0.215582!10188-103D8;0.240145!10552-107I3;0.0886748!10553-107I4;0.000508837!10013-101C4;0.832132!10536-107G5;0.0602915!10618-108G6;0.140648!10423-106C9;0.119972!10785-110H2;0.284916!12238-129G6;0.264131!12239-129G7;0.862083!12240-129G8;0.758123!10416-106C2;0.667951!10801-110I9;0.0502519!10766-110F1;0.325388!10824-111C5;0.10605!10825-111C6;0.224617!10826-111C7;0.21005!10454-106G4;0.247785!10409-106B4;0.107909!10638-108I8;0.408549!10636-108I6;0.295592!10513-107D9;0.906529!10420-106C6;0.617076!10082-102B1;0.374187!10014-101C5;0.107348!10070-101I7;0.112328!10452-106G2;0.0274551!10453-106G3;0.418304!10449-106F8;0.1767!10042-101F6;0.230692!10069-101I6;0.111656!10193-103E4;0.510762!10631-108I1;0.39751!10438-106E6;0.343342!10488-107B2;0.447846!10196-103E7;0.148448!10071-101I8;0.685677!10071-101I8;0.0167121!10041-101F5;0.139321!10451-106G1;0.0449459!10450-106F9;0.238081!10604-108F1;0.0403935!10605-108F2;0.277574!10606-108F3;0.422944!10603-108E9;0.293372!10497-107C2;0.275933!10448-106F7;0.292104!10643-109A4;0.309825!10426-106D3;0.999519!10431-106D8;0.40432!10197-103E8;0.314874!10443-106F2;0.240041!10815-111B5;0.477399!10816-111B6;0.046393!10817-111B7;0.113918!10015-101C6;0.0390925!10410-106B5;0.0331368!10054-101G9;0.317687!10758-110E2;0.0752691!10711-109H9;0.0219483!10040-101F4;0.050722!10470-106I2;0.168533!10415-106C1;0.331983!10198-103E9;0.376128!10614-108G2;0.00591665!10612-108F9;0.296333!10549-107H9;0.578447!10615-108G3;0.163996!10487-107B1;0.483687!10433-106E1;0.0325419!10688-109F4;0.0201128!10444-106F3;0.246927!10444-106F3;0.130841!10485-107A8;0.133505!10413-106B8;0.058637!10175-103C4;0.220089!10161-103A8;0.197951!12131-128D7;0.130106!10624-108H3;0.620859!10712-109I1;0.61019!10205-103F7;0.626494!10206-103F8;0.298949!10207-103F9;0.53542!10050-101G5;0.314756!10051-101G6;0.547662!10016-101C7;0.835586!10046-101G1;0.745708!10778-110G4;0.54678!10633-108I3;0.587324!10818-111B8;0.896671!10819-111B9;0.479501!10820-111C1;0.492061!10484-107A7;0.528674!10808-111A7;0.220457!10169-103B7;0.10058!10153-102I9;0.277899!13425-144D5;0.0974799!13433-144E4;0.473997!13437-144E8;0.465003!11904-125F5;0.355624!11905-125F6;0.903179!10039-101F3;0.920922!10791-110H8;0.162278!10017-101C8;0.197231!10045-101F9;0.421023!10509-107D5;0.361415!10839-111E2;0.379466!10692-109F8;0.124606!10079-102A7;0.0816596!10078-102A6;0.511801!10721-110A1;0.863955!10569-108B2;0.390501!10570-108B3;0.803733!10571-108B4;0.84!10647-109A8;0.352325!10752-110D5;0.726358!10782-110G8;0.325499!10726-110A6;0.79243!10018-101C9;0.137293!10086-102B5;0.151126!10182-103D2;0.0621229!10165-103B3;0.201687!10499-107C4;0.206629!10408-106B3;0.0272132!10019-101D1;0.110329!10068-101I5;0.00916935!10075-102A3;0.022697!10077-102A5;0.00960563!10727-110A7;0.0776996!10775-110G1;0.232246!10412-106B7;0.218394!12231-129F8;0.853363!12232-129F9;0.497248!12233-129G1;0.408787!12234-129G2;0.52087!10414-106B9;0.664761!10170-103B8;0.519536!10183-103D3;0.315256!10150-102I6;0.209707!10174-103C3;0.150037!10155-103A2;0.149431!10038-101F2;0.107236!10838-111E1;0.0928423!10759-110E3;0.59077!10514-107E1;0.356801!10465-106H6;0.0847103!10691-109F7;0.301945!10843-111E6;0.250913!10844-111E7;0.728362!11747-123G1;0.192879!11748-123G2;0.824997!11749-123G3;0.55133!11750-123G4;0.720411!11751-123G5;0.68831!11840-124H4;0.74399!11752-123G6;0.830885!11753-123G7;0.870303!11754-123G8;0.755507!11755-123G9;0.684159!11756-123H1;0.985793!11833-124G6;0.539456!11760-123H5;0.551042!11836-124G9;0.503678!11758-123H3;0.737636!11835-124G8;0.644282!11762-123H7;0.222493!11838-124H2;0.888879!11757-123H2;0.977979!11759-123H4;0.921435!11761-123H6;0.767284!11842-124H6;0.472098!11837-124H1;0.532431!10568-108B1;0.219947!13230-141I8;0.309227!13231-141I9;0.932531!10696-109G3;0.900087!10493-107B7;0.448386!10494-107B8;0.0453184!10850-111F4;0.261136!10851-111F5;0.715508!10852-111F6;0.440648!10853-111F7;0.20775!10854-111F8;0.894849!10855-111F9;0.453022!10856-111G1;0.411503!10847-111F1;0.559376!10846-111E9;0.586992!10848-111F2;0.326598!10845-111E8;0.803837!10857-111G2;0.467982!10858-111G3;0.408743!10156-103A3;0.178145!11901-125F2;0.162555!11902-125F3;0.371389!11903-125F4;0.230038!10689-109F5;0.247527!10648-109A9;0.0276682!10784-110H1;0.154027!10744-110C6;0.983333!10772-110F7;0.177555!10474-106I6;0.19047!10600-108E6;0.0140365!10684-109E9;0.353698!12226-129F3;0.142624!12227-129F4;0.30494!10508-107D4;0.850975!10539-107G8;0.369753!10607-108F4;0.291425!10555-107I6;0.685598!10774-110F9;0.385396!10637-108I7;0.000206767!10663-109C6;0.174555!10728-110A8;0.0711762!10729-110A9;0.0012451!10430-106D7;0.549722!10730-110B1;0.483053!10813-111B3;0.100546!10812-111B2;0.906748!10037-101F1;0.747381!10172-103C1;0.147454!10163-103B1;0.300129!10076-102A4;0.121921!10073-102A1;0.15349!10036-101E9;0.228188!10195-103E6;0.21763!10277-104E7;0.0977503!10434-106E2;0.396278!10550-107I1;0.20738!10545-107H5;0.165381!10544-107H4;0.401492!10704-109H2;0.0781743!10510-107D6;0.671912!10558-107I9;0.556941!10020-101D2;0.226913!10732-110B3;0.186098!10049-101G4;0.930319!10698-109G5;0.228662!10437-106E5;0.198699!10417-106C3;0.746362!10035-101E8;0.901713!10171-103B9;0.182509!10157-103A4;0.300912!10034-101E7;0.15865!10072-101I9;0.180794!10199-103F1;0.206727!10200-103F2;0.195635!10697-109G4;0.173367!10723-110A3;0.123394!10179-103C8;0.274908!10160-103A7;0.235921!10180-103C9;0.282138!10162-103A9;0.267544!10021-101D3;0.261104!10840-111E3;0.984765!10706-109H4;0.288364!10033-101E6;0.338798!10032-101E5;0.189854!10490-107B4;0.214738!10439-106E7;0.036397!10022-101D4;0.511948!10176-103C5;0.127584!10469-106I1;0.370045!10067-101I4;0.168858!10411-106B6;0.26489!10471-106I3;0.273013!10030-101E3;0.569552!10475-106I7;0.0488945!10787-110H4;0.235375!10477-106I9;0.0346851!10695-109G2;0.366749!11771-123I7;0.881271!11772-123I8;0.851902!11773-123I9;0.437126!10093-102C3;0.283399!10442-106F1;0.191612!10442-106F1;0.698369!10201-103F3;0.782479!10639-108I9;0.747618!11843-124H7;0.806499!11841-124H5;0.251236!10693-109F9;0.236438!10436-106E4;0.819297!10483-107A6;0.364262!10282-104F3;0.751818!10023-101D5;0.960349!10066-101I3;0.807419!10065-101I2;0.407827!10800-110I8;0.220442!10610-108F7;0.272951!10841-111E4;0.831531!10541-107H1;0.0933747!10842-111E5;0.565952!10562-108A4;0.650281!10024-101D6;0.60874!10064-101I1;0.180018!10609-108F6;0.30348!10048-101G3;0.538893!10781-110G7;0.166729!10181-103D1;0.637425!10159-103A6;0.164152!10056-101H2;0.0580584!10737-110B8;0.0986149!10025-101D7;0.542681!10044-101F8;0.0043772!10424-106D1;0.000235137!10463-106H4;0.11447!10616-108G4;0.540726!10486-107A9;0.112504!10062-101H8;0.0998961!10202-103F4;0.0190604!10158-103A5;0.329131!10441-106E9;0.227765!10031-101E4;0.229882!10063-101H9;0.126783!10063-101H9;0.220592!11763-123H8;0.0128422!11765-123I1;0.923816!11768-123I4;0.80161!10807-111A6;0.761315!10790-110H7;0.624869!10798-110I6;0.212404!10786-110H3;0.285422!10591-108D6;0.502156!10593-108D8;0.629447!10590-108D5;0.686745!10026-101D8;0.542413!10096-102C6;0.00886469!10168-103B6;0.114428!10154-103A1;0.242702!10209-103G2;0.174934!10061-101H7;0.372031!10027-101D9;0.251675!10043-101F7;0.886359!10783-110G9;0.0967964!10028-101E1;0.33727!10060-101H6;0.397023!10203-103F5;0.39447!10059-101H5;0.474448!10047-101G2;0.66136!10029-101E2;0.234612!10058-101H4;0.0115908!10418-106C4;0.193565!10492-107B6;0.385698!10694-109G1;0.254428!10797-110I5;0.486619!10057-101H3;0.54811!10100-102D1;0.727385!10055-101H1;0.0568338!10204-103F6;0.0494148!10191-103E2;0.0919589!10563-108A5;0.204672
|name=AAACTATA,motif684,CNhs11065,T:1202.0(43.35%),B:23571.4(33.01%),P:1e-29
|name=AAACTATA,motif684,CNhs11065,T:1202.0(43.35%),B:23571.4(33.01%),P:1e-29
|tomtom_result=br_Z3#MA0012.1;1;0.00105799;0.503602;0.880117;8;AAACTATA;TAAACTAAAAG;+!Foxq1#MA0040.1;3;0.00184898;0.880117;0.880117;8;AAACTATA;AATAAACAATA;-!THI2#MA0407.1;2;0.00980259;4.66603;1;8;AAACTATA;GGAAACTCTAAGAAC;+!Sox5#MA0087.1;0;0.0128027;6.09411;1;7;AAACTATA;AAACAAT;+!SOX9#MA0077.1;0;0.0133057;6.33352;1;8;AAACTATA;GAACAATGG;+!kni#MA0451.1;0;0.0148732;7.07963;1;8;AAACTATA;AAACTAGAGCAC;+!br_Z4#MA0013.1;4;0.0200076;9.5236;1;7;AAACTATA;TAGTAAACAAA;+
}}
}}

Latest revision as of 14:54, 7 September 2012

Full Name: AAACTATA,motif684,CNhs11065,T:1202.0(43.35%),B:23571.4(33.01%),P:1e-29

Motif matrix
POACGT
1937.56123.80645.67694.958
2828.17876.928193.522103.372
3950.78278.13131.01842.07
439.666933.954163.47264.908
586.54476.92815.6261022.902
6805.3468.514191.118137.028
776.928158.66475.726890.682
8848.61288.94899.766164.674

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
br_Z3#MA0012.110.001057990.5036020.8801178AAACTATATAAACTAAAAG+
Foxq1#MA0040.130.001848980.8801170.8801178AAACTATAAATAAACAATA-
THI2#MA0407.120.009802594.6660318AAACTATAGGAAACTCTAAGAAC+
Sox5#MA0087.100.01280276.0941117AAACTATAAAACAAT+
SOX9#MA0077.100.01330576.3335218AAACTATAGAACAATGG+
kni#MA0451.100.01487327.0796318AAACTATAAAACTAGAGCAC+
br_Z4#MA0013.140.02000769.523617AAACTATATAGTAAACAAA+
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