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MacroAPE 1083:HOX(A5,B5): Difference between revisions

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|PWM=null
|PWM=null
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|name=HOX{A5,B5}
|name=HOX{A5,B5
|tomtom_result=Pax4#MA0068.1;-1;0.000199829;0.0951184;0.119549;29;TGCCAACTTCCTCATTATTGCTCAACTTCA;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!NHP6A#MA0345.1;-2;0.000287039;0.13663;0.119549;21;TGCCAACTTCCTCATTATTGCTCAACTTCA;ATGACCTATATATAAAAATGA;+!Ubx#MA0094.1;-13;0.000526999;0.250852;0.123723;4;TGCCAACTTCCTCATTATTGCTCAACTTCA;ATTA;-!SMP1#MA0383.1;-7;0.000594125;0.282803;0.123723;21;TGCCAACTTCCTCATTATTGCTCAACTTCA;TTACCTATAATTAAATTAGCA;+!NHP6B#MA0346.1;-5;0.000957096;0.455577;0.126614;20;TGCCAACTTCCTCATTATTGCTCAACTTCA;TTTATTTATATATAATATGA;+!lbl#MA0232.1;-11;0.00123852;0.589538;0.126614;6;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTA;-!ems#MA0219.1;-11;0.00137123;0.652706;0.126614;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TCATTAA;-!E5#MA0189.1;-11;0.00177225;0.84359;0.126614;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAA;-!eve#MA0221.1;-11;0.00177225;0.84359;0.126614;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TCATTAG;-!SFL1#MA0377.1;-1;0.00182402;0.868234;0.126614;21;TGCCAACTTCCTCATTATTGCTCAACTTCA;TTTTATTTCTTCTATTCTCTA;-!ATHB-5#MA0110.1;-10;0.00228511;1.08771;0.127613;9;TGCCAACTTCCTCATTATTGCTCAACTTCA;CCAATTATT;+!HAT5#MA0008.1;-11;0.0023382;1.11298;0.127613;8;TGCCAACTTCCTCATTATTGCTCAACTTCA;CAATTATT;+!btn#MA0215.1;-11;0.00245121;1.16678;0.127613;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TCATTAA;-!zen#MA0256.1;-11;0.00286365;1.3631;0.140315;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TCATTAG;-!USV1#MA0413.1;-4;0.00315028;1.49953;0.145703;20;TGCCAACTTCCTCATTATTGCTCAACTTCA;AAATTCCCCCTGAATTTGTG;+!zen2#MA0257.1;-11;0.00333113;1.58562;0.145703;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAA;-!GCN4#MA0303.1;0;0.00362011;1.72317;0.145703;21;TGCCAACTTCCTCATTATTGCTCAACTTCA;TGAAGTATGACTCATCCCTTG;-!HMG-I/Y#MA0045.1;-5;0.00367329;1.74848;0.145703;16;TGCCAACTTCCTCATTATTGCTCAACTTCA;GTTTTTCCATTTGTTG;-!ARO80#MA0273.1;-2;0.00395613;1.88312;0.149495;21;TGCCAACTTCCTCATTATTGCTCAACTTCA;GATAATTCTCGGCAAGTATGT;+!STB3#MA0390.1;1;0.00413473;1.96813;0.149495;20;TGCCAACTTCCTCATTATTGCTCAACTTCA;GTCCAAAATTTTTCACTCTGG;+!Pph13#MA0200.1;-11;0.00478355;2.27697;0.149495;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAG;-!Nobox#MA0125.1;-9;0.00496989;2.36567;0.149495;8;TGCCAACTTCCTCATTATTGCTCAACTTCA;ACCAATTA;-!HOXA5#MA0158.1;-12;0.00496989;2.36567;0.149495;8;TGCCAACTTCCTCATTATTGCTCAACTTCA;AATTAGTG;-!Scr#MA0203.1;-11;0.00512911;2.44146;0.149495;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TCATTAA;-!pb#MA0238.1;-11;0.00512911;2.44146;0.149495;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAA;-!HGTX#MA0191.1;-11;0.00588236;2.8;0.149495;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAA;-!br_Z1#MA0010.1;-4;0.00588933;2.80332;0.149495;14;TGCCAACTTCCTCATTATTGCTCAACTTCA;GATTTGTCTATTAC;-!CG18599#MA0177.1;-11;0.0062914;2.99471;0.149495;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAA;-!Lim3#MA0195.1;-11;0.0067231;3.2002;0.149495;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAA;-!tup#MA0248.1;-11;0.0067231;3.2002;0.149495;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;CAATTAA;-!Tal1::Gata1#MA0140.1;-13;0.00674739;3.21176;0.149495;17;TGCCAACTTCCTCATTATTGCTCAACTTCA;CTTATCTGTCCCCACCAG;-!CG9876#MA0184.1;-10;0.0071788;3.41711;0.149495;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;CTAATTA;+!Dfd#MA0186.1;-11;0.0071788;3.41711;0.149495;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TCATTAA;-!ap#MA0209.1;-11;0.0071788;3.41711;0.149495;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAG;-!bsh#MA0214.1;-11;0.0071788;3.41711;0.149495;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;CAATTAA;-!ro#MA0241.1;-10;0.00766014;3.64623;0.151922;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;CTAATTA;+!slou#MA0245.1;-11;0.00766014;3.64623;0.151922;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;CAATTAA;-!Pdx1#MA0132.1;-12;0.00796108;3.78947;0.154219;6;TGCCAACTTCCTCATTATTGCTCAACTTCA;AATTAG;-!Pax5#MA0014.1;-4;0.00862993;4.10785;0.154512;20;TGCCAACTTCCTCATTATTGCTCAACTTCA;CCGCTACGCTTCAGTGCTCT;-!GSM1#MA0308.1;-2;0.00892284;4.24727;0.154512;21;TGCCAACTTCCTCATTATTGCTCAACTTCA;TATACTCCGGAGTTTTTTAAT;-!Awh#MA0167.1;-10;0.00927221;4.41357;0.154512;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TTAATTA;+!PHDP#MA0457.1;-11;0.00927221;4.41357;0.154512;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAA;-!Oct#MA0197.1;-11;0.00928621;4.42024;0.154512;8;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAAA;-!Rx#MA0202.1;-10;0.0098704;4.69831;0.154512;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;CTAATTA;+!CG13424#MA0175.1;-11;0.0105019;4.9989;0.154512;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;CAATTAA;-!NFYA#MA0060.1;-7;0.0108639;5.1712;0.154512;16;TGCCAACTTCCTCATTATTGCTCAACTTCA;GCGCTGATTGGCTGAG;-!otp#MA0236.1;-10;0.0111684;5.31616;0.154512;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TTAATTA;+!Vsx1#MA0181.1;-10;0.0118716;5.65087;0.154512;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TTAATTA;+!Dll#MA0187.1;-10;0.0118716;5.65087;0.154512;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;GTAATTA;-!OdsH#MA0455.1;-10;0.0118716;5.65087;0.154512;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;CTAATTA;+!ftz#MA0225.1;-11;0.0118716;5.65087;0.154512;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAA;-!ind#MA0228.1;-11;0.0118716;5.65087;0.154512;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAG;-!H2.0#MA0448.1;-11;0.0118716;5.65087;0.154512;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAA;-!OdsH#MA0455.1;-10;0.0118716;5.65087;0.154512;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;CTAATTA;+!TBP#MA0108.2;-5;0.012889;6.13515;0.158183;15;TGCCAACTTCCTCATTATTGCTCAACTTCA;CCCCGCCTTTTATAC;-!Dr#MA0188.1;-10;0.0133958;6.37641;0.158183;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;CCAATTA;+!SOX9#MA0077.1;-11;0.0134162;6.38613;0.158183;9;TGCCAACTTCCTCATTATTGCTCAACTTCA;CCATTGTTC;-!TBP#MA0108.2;-5;0.013483;6.41788;0.158183;15;TGCCAACTTCCTCATTATTGCTCAACTTCA;CCCCGCCTTTTATAC;-!CG4328#MA0182.1;-13;0.014221;6.76919;0.164525;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TTTATTA;+!MGA1#MA0336.1;-1;0.0145126;6.90799;0.165598;21;TGCCAACTTCCTCATTATTGCTCAACTTCA;TTTAGAGTGTTCTATAGTCCT;-!Prrx2#MA0075.1;-12;0.0147147;7.0042;0.165636;5;TGCCAACTTCCTCATTATTGCTCAACTTCA;AATTA;+!CG32105#MA0178.1;-10;0.0150907;7.18315;0.167603;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TTAATTA;+!AG#MA0005.1;-8;0.0154097;7.33502;0.168894;11;TGCCAACTTCCTCATTATTGCTCAACTTCA;ACCAAATTTGG;-!NK7.1#MA0196.1;-11;0.0160062;7.61895;0.170238;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;CAATTAA;-!unpg#MA0251.1;-10;0.0169702;8.07779;0.170238;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TTAATTA;+!D#MA00445.1;-10;0.0169816;8.08323;0.170238;11;TGCCAACTTCCTCATTATTGCTCAACTTCA;TCCATTGTTCT;+!lbe#MA0231.1;-11;0.0172766;8.22366;0.170238;6;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAGTTA;-!Antp#MA0166.1;-11;0.0179848;8.56076;0.170238;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TCATTAA;-!CG11294#MA0172.1;-10;0.0179848;8.56076;0.170238;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TTAATTA;+!en#MA0220.1;-11;0.0179848;8.56076;0.170238;7;TGCCAACTTCCTCATTATTGCTCAACTTCA;TAATTAA;-!CG7056#MA0183.1;-9;0.0185016;8.80678;0.173163;8;TGCCAACTTCCTCATTATTGCTCAACTTCA;TTTAATTA;+!SUT2#MA0400.1;-2;0.0209942;9.99325;0.183431;20;TGCCAACTTCCTCATTATTGCTCAACTTCA;AAATTTTCGGAGTTTATCAT;-
}}
}}

Latest revision as of 14:54, 7 September 2012

Full Name: HOX{A5,B5

Motif matrix
null

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

Pax4#MA0068.1-10.0001998290.09511840.11954929TGCCAACTTCCTCATTATTGCTCAACTTCAGAAAAATTTCCCATACTCCACTCCCCCCCC+
NHP6A#MA0345.1-20.0002870390.136630.11954921TGCCAACTTCCTCATTATTGCTCAACTTCAATGACCTATATATAAAAATGA+
Ubx#MA0094.1-130.0005269990.2508520.1237234TGCCAACTTCCTCATTATTGCTCAACTTCAATTA-
SMP1#MA0383.1-70.0005941250.2828030.12372321TGCCAACTTCCTCATTATTGCTCAACTTCATTACCTATAATTAAATTAGCA+
NHP6B#MA0346.1-50.0009570960.4555770.12661420TGCCAACTTCCTCATTATTGCTCAACTTCATTTATTTATATATAATATGA+
lbl#MA0232.1-110.001238520.5895380.1266146TGCCAACTTCCTCATTATTGCTCAACTTCATAATTA-
ems#MA0219.1-110.001371230.6527060.1266147TGCCAACTTCCTCATTATTGCTCAACTTCATCATTAA-
E5#MA0189.1-110.001772250.843590.1266147TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAA-
eve#MA0221.1-110.001772250.843590.1266147TGCCAACTTCCTCATTATTGCTCAACTTCATCATTAG-
SFL1#MA0377.1-10.001824020.8682340.12661421TGCCAACTTCCTCATTATTGCTCAACTTCATTTTATTTCTTCTATTCTCTA-
ATHB-5#MA0110.1-100.002285111.087710.1276139TGCCAACTTCCTCATTATTGCTCAACTTCACCAATTATT+
HAT5#MA0008.1-110.00233821.112980.1276138TGCCAACTTCCTCATTATTGCTCAACTTCACAATTATT+
btn#MA0215.1-110.002451211.166780.1276137TGCCAACTTCCTCATTATTGCTCAACTTCATCATTAA-
zen#MA0256.1-110.002863651.36310.1403157TGCCAACTTCCTCATTATTGCTCAACTTCATCATTAG-
USV1#MA0413.1-40.003150281.499530.14570320TGCCAACTTCCTCATTATTGCTCAACTTCAAAATTCCCCCTGAATTTGTG+
zen2#MA0257.1-110.003331131.585620.1457037TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAA-
GCN4#MA0303.100.003620111.723170.14570321TGCCAACTTCCTCATTATTGCTCAACTTCATGAAGTATGACTCATCCCTTG-
HMG-I/Y#MA0045.1-50.003673291.748480.14570316TGCCAACTTCCTCATTATTGCTCAACTTCAGTTTTTCCATTTGTTG-
ARO80#MA0273.1-20.003956131.883120.14949521TGCCAACTTCCTCATTATTGCTCAACTTCAGATAATTCTCGGCAAGTATGT+
STB3#MA0390.110.004134731.968130.14949520TGCCAACTTCCTCATTATTGCTCAACTTCAGTCCAAAATTTTTCACTCTGG+
Pph13#MA0200.1-110.004783552.276970.1494957TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAG-
Nobox#MA0125.1-90.004969892.365670.1494958TGCCAACTTCCTCATTATTGCTCAACTTCAACCAATTA-
HOXA5#MA0158.1-120.004969892.365670.1494958TGCCAACTTCCTCATTATTGCTCAACTTCAAATTAGTG-
Scr#MA0203.1-110.005129112.441460.1494957TGCCAACTTCCTCATTATTGCTCAACTTCATCATTAA-
pb#MA0238.1-110.005129112.441460.1494957TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAA-
HGTX#MA0191.1-110.005882362.80.1494957TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAA-
br_Z1#MA0010.1-40.005889332.803320.14949514TGCCAACTTCCTCATTATTGCTCAACTTCAGATTTGTCTATTAC-
CG18599#MA0177.1-110.00629142.994710.1494957TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAA-
Lim3#MA0195.1-110.00672313.20020.1494957TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAA-
tup#MA0248.1-110.00672313.20020.1494957TGCCAACTTCCTCATTATTGCTCAACTTCACAATTAA-
Tal1::Gata1#MA0140.1-130.006747393.211760.14949517TGCCAACTTCCTCATTATTGCTCAACTTCACTTATCTGTCCCCACCAG-
CG9876#MA0184.1-100.00717883.417110.1494957TGCCAACTTCCTCATTATTGCTCAACTTCACTAATTA+
Dfd#MA0186.1-110.00717883.417110.1494957TGCCAACTTCCTCATTATTGCTCAACTTCATCATTAA-
ap#MA0209.1-110.00717883.417110.1494957TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAG-
bsh#MA0214.1-110.00717883.417110.1494957TGCCAACTTCCTCATTATTGCTCAACTTCACAATTAA-
ro#MA0241.1-100.007660143.646230.1519227TGCCAACTTCCTCATTATTGCTCAACTTCACTAATTA+
slou#MA0245.1-110.007660143.646230.1519227TGCCAACTTCCTCATTATTGCTCAACTTCACAATTAA-
Pdx1#MA0132.1-120.007961083.789470.1542196TGCCAACTTCCTCATTATTGCTCAACTTCAAATTAG-
Pax5#MA0014.1-40.008629934.107850.15451220TGCCAACTTCCTCATTATTGCTCAACTTCACCGCTACGCTTCAGTGCTCT-
GSM1#MA0308.1-20.008922844.247270.15451221TGCCAACTTCCTCATTATTGCTCAACTTCATATACTCCGGAGTTTTTTAAT-
Awh#MA0167.1-100.009272214.413570.1545127TGCCAACTTCCTCATTATTGCTCAACTTCATTAATTA+
PHDP#MA0457.1-110.009272214.413570.1545127TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAA-
Oct#MA0197.1-110.009286214.420240.1545128TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAAA-
Rx#MA0202.1-100.00987044.698310.1545127TGCCAACTTCCTCATTATTGCTCAACTTCACTAATTA+
CG13424#MA0175.1-110.01050194.99890.1545127TGCCAACTTCCTCATTATTGCTCAACTTCACAATTAA-
NFYA#MA0060.1-70.01086395.17120.15451216TGCCAACTTCCTCATTATTGCTCAACTTCAGCGCTGATTGGCTGAG-
otp#MA0236.1-100.01116845.316160.1545127TGCCAACTTCCTCATTATTGCTCAACTTCATTAATTA+
Vsx1#MA0181.1-100.01187165.650870.1545127TGCCAACTTCCTCATTATTGCTCAACTTCATTAATTA+
Dll#MA0187.1-100.01187165.650870.1545127TGCCAACTTCCTCATTATTGCTCAACTTCAGTAATTA-
OdsH#MA0455.1-100.01187165.650870.1545127TGCCAACTTCCTCATTATTGCTCAACTTCACTAATTA+
ftz#MA0225.1-110.01187165.650870.1545127TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAA-
ind#MA0228.1-110.01187165.650870.1545127TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAG-
H2.0#MA0448.1-110.01187165.650870.1545127TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAA-
OdsH#MA0455.1-100.01187165.650870.1545127TGCCAACTTCCTCATTATTGCTCAACTTCACTAATTA+
TBP#MA0108.2-50.0128896.135150.15818315TGCCAACTTCCTCATTATTGCTCAACTTCACCCCGCCTTTTATAC-
Dr#MA0188.1-100.01339586.376410.1581837TGCCAACTTCCTCATTATTGCTCAACTTCACCAATTA+
SOX9#MA0077.1-110.01341626.386130.1581839TGCCAACTTCCTCATTATTGCTCAACTTCACCATTGTTC-
TBP#MA0108.2-50.0134836.417880.15818315TGCCAACTTCCTCATTATTGCTCAACTTCACCCCGCCTTTTATAC-
CG4328#MA0182.1-130.0142216.769190.1645257TGCCAACTTCCTCATTATTGCTCAACTTCATTTATTA+
MGA1#MA0336.1-10.01451266.907990.16559821TGCCAACTTCCTCATTATTGCTCAACTTCATTTAGAGTGTTCTATAGTCCT-
Prrx2#MA0075.1-120.01471477.00420.1656365TGCCAACTTCCTCATTATTGCTCAACTTCAAATTA+
CG32105#MA0178.1-100.01509077.183150.1676037TGCCAACTTCCTCATTATTGCTCAACTTCATTAATTA+
AG#MA0005.1-80.01540977.335020.16889411TGCCAACTTCCTCATTATTGCTCAACTTCAACCAAATTTGG-
NK7.1#MA0196.1-110.01600627.618950.1702387TGCCAACTTCCTCATTATTGCTCAACTTCACAATTAA-
unpg#MA0251.1-100.01697028.077790.1702387TGCCAACTTCCTCATTATTGCTCAACTTCATTAATTA+
D#MA00445.1-100.01698168.083230.17023811TGCCAACTTCCTCATTATTGCTCAACTTCATCCATTGTTCT+
lbe#MA0231.1-110.01727668.223660.1702386TGCCAACTTCCTCATTATTGCTCAACTTCATAGTTA-
Antp#MA0166.1-110.01798488.560760.1702387TGCCAACTTCCTCATTATTGCTCAACTTCATCATTAA-
CG11294#MA0172.1-100.01798488.560760.1702387TGCCAACTTCCTCATTATTGCTCAACTTCATTAATTA+
en#MA0220.1-110.01798488.560760.1702387TGCCAACTTCCTCATTATTGCTCAACTTCATAATTAA-
CG7056#MA0183.1-90.01850168.806780.1731638TGCCAACTTCCTCATTATTGCTCAACTTCATTTAATTA+
SUT2#MA0400.1-20.02099429.993250.18343120TGCCAACTTCCTCATTATTGCTCAACTTCAAAATTTTCGGAGTTTATCAT-