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MacroAPE 1083:CNhs13458 bu f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;55.09388573374563;9.656936405136669;139.39729434755907;43.76482328654897!2;8.778805259405566;31.865430671207292;118.19291663443694;89.075787...")
 
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6!10788-110H5;0.573469!10792-110H9;0.522317!10765-110E9;0.458118!10829-111D1;0.602558!10830-111D2;0.623771!10831-111D3;0.530055!10832-111D4;0.452673!10833-111D5;0.541484!10764-110E8;0.486042!10770-110F5;0.390226!10399-106A3;0.186656!10400-106A4;0.293015!10405-106A9;0.323069!10834-111D6;0.376692!10835-111D7;0.523567!10836-111D8;0.685639!10837-111D9;0.413288!10699-109G6;0.2082!10802-111A1;0.838558!10796-110I4;0.564162!10010-101C1;0.561087!10810-111A9;0.908416!10421-106C7;0.706814!10708-109H6;0.578462!12235-129G3;0.739783!12236-129G4;0.411314!12237-129G5;0.219886!10167-103B5;0.518981!10151-102I7;0.366551!10428-106D5;0.178585!10795-110I3;0.0550844!10805-111A4;0.347024!10052-101G7;0.610692!10189-103D9;0.854966!10589-108D4;0.832214!10425-106D2;0.874259!10427-106D4;0.174703!10702-109G9;0.995612!10432-106D9;0.931418!10496-107C1;0.661137!10718-109I7;0.379151!10011-101C2;0.235889!10053-101G8;0.815009!10686-109F2;0.530625!10084-102B3;0.74854!10012-101C3;0.411962!10085-102B4;0.401627!10482-107A5;0.186515!10419-106C5;0.116271!10080-102A8;0.796464!10760-110E4;0.789556!10709-109H7;0.885658!10710-109H8;0.939966!10703-109H1;0.480676!10719-109I8;0.973959!10642-109A3;0.872073!10177-103C6;0.714735!10164-103B2;0.251647!10173-103C2;0.235432!10166-103B4;0.209897!10083-102B2;0.175677!10188-103D8;0.292899!10552-107I3;0.33477!10553-107I4;0.848174!10013-101C4;0.912871!10536-107G5;0.911657!10618-108G6;0.498886!10423-106C9;0.362753!10785-110H2;0.958593!12238-129G6;0.793846!12239-129G7;0.266123!12240-129G8;0.863224!10416-106C2;0.325823!10801-110I9;0.354525!10766-110F1;0.487214!10824-111C5;0.355121!10825-111C6;0.385151!10826-111C7;0.352527!10454-106G4;0.465959!10409-106B4;0.375209!10638-108I8;0.533686!10636-108I6;0.611622!10513-107D9;0.943718!10420-106C6;0.5976!10082-102B1;0.655754!10014-101C5;0.956406!10070-101I7;0.735618!10452-106G2;0.953446!10453-106G3;0.780962!10449-106F8;0.962292!10042-101F6;0.987524!10069-101I6;0.327638!10193-103E4;0.728324!10631-108I1;0.264642!10438-106E6;0.482995!10488-107B2;0.0884893!10196-103E7;0.723076!10071-101I8;0.921182!10071-101I8;0.663499!10041-101F5;0.188528!10451-106G1;0.938515!10450-106F9;0.633332!10604-108F1;0.727838!10605-108F2;0.0835156!10606-108F3;0.165885!10603-108E9;0.0923469!10497-107C2;0.19109!10448-106F7;0.61522!10643-109A4;0.866546!10426-106D3;0.854146!10431-106D8;0.761726!10197-103E8;0.934424!10443-106F2;0.956833!10815-111B5;0.535572!10816-111B6;0.77524!10817-111B7;0.952888!10015-101C6;0.823026!10410-106B5;0.658542!10054-101G9;0.384835!10758-110E2;0.876323!10711-109H9;0.344169!10040-101F4;0.95795!10470-106I2;0.247583!10415-106C1;0.872182!10198-103E9;0.341451!10614-108G2;0.852839!10612-108F9;0.582187!10549-107H9;0.817689!10615-108G3;0.449967!10487-107B1;0.487014!10433-106E1;0.416359!10688-109F4;0.133809!10444-106F3;0.350399!10444-106F3;0.762129!10485-107A8;0.866724!10413-106B8;0.743331!10175-103C4;0.656971!10161-103A8;0.336743!12131-128D7;0.317515!10624-108H3;0.684579!10712-109I1;0.220914!10205-103F7;0.181499!10206-103F8;0.982558!10207-103F9;0.904293!10050-101G5;0.689305!10051-101G6;0.544144!10016-101C7;0.626794!10046-101G1;0.933165!10778-110G4;0.960189!10633-108I3;0.630299!10818-111B8;0.211648!10819-111B9;0.753011!10820-111C1;0.726025!10484-107A7;0.68831!10808-111A7;0.359326!10169-103B7;0.988771!10153-102I9;0.29382!13425-144D5;0.247746!13433-144E4;0.959384!13437-144E8;0.860311!11904-125F5;0.758229!11905-125F6;0.382399!10039-101F3;0.322235!10791-110H8;0.265434!10017-101C8;0.41625!10045-101F9;0.86719!10509-107D5;0.354632!10839-111E2;0.132571!10692-109F8;0.63004!10079-102A7;0.728755!10078-102A6;0.743639!10721-110A1;0.579696!10569-108B2;0.663295!10570-108B3;0.511456!10571-108B4;0.998334!10647-109A8;0.387419!10752-110D5;0.502887!10782-110G8;0.867049!10726-110A6;0.86608!10018-101C9;0.753261!10086-102B5;0.960985!10182-103D2;0.847648!10165-103B3;0.455005!10499-107C4;0.325285!10408-106B3;0.0916819!10019-101D1;0.372275!10068-101I5;0.979075!10075-102A3;0.640241!10077-102A5;0.929045!10727-110A7;0.965074!10775-110G1;0.426789!10412-106B7;0.616487!12231-129F8;0.422536!12232-129F9;0.860218!12233-129G1;0.462389!12234-129G2;0.935901!10414-106B9;0.881404!10170-103B8;0.200011!10183-103D3;0.413567!10150-102I6;0.461046!10174-103C3;0.269346!10155-103A2;0.575614!10038-101F2;0.315654!10838-111E1;0.429328!10759-110E3;0.717547!10514-107E1;0.304502!10465-106H6;0.803113!10691-109F7;0.624071!10843-111E6;0.513533!10844-111E7;0.80707!11747-123G1;0.928728!11748-123G2;0.373318!11749-123G3;0.796271!11750-123G4;0.402973!11751-123G5;0.523587!11840-124H4;0.614865!11752-123G6;0.0328955!11753-123G7;0.538696!11754-123G8;0.836082!11755-123G9;0.833958!11756-123H1;0.632076!11833-124G6;0.589654!11760-123H5;0.933416!11836-124G9;0.959552!11758-123H3;0.440601!11835-124G8;0.657203!11762-123H7;0.780282!11838-124H2;0.388145!11757-123H2;0.553207!11759-123H4;0.196993!11761-123H6;0.990244!11842-124H6;0.86214!11837-124H1;0.614762!10568-108B1;0.721868!13230-141I8;0.176763!13231-141I9;0.516202!10696-109G3;0.655605!10493-107B7;0.361276!10494-107B8;0.949423!10850-111F4;0.816873!10851-111F5;0.850127!10852-111F6;0.290737!10853-111F7;0.269806!10854-111F8;0.181594!10855-111F9;0.895383!10856-111G1;0.691935!10847-111F1;0.139857!10846-111E9;0.946055!10848-111F2;0.382667!10845-111E8;0.435404!10857-111G2;0.45926!10858-111G3;0.743187!10156-103A3;0.348989!11901-125F2;0.277595!11902-125F3;0.16457!11903-125F4;0.283062!10689-109F5;0.262259!10648-109A9;0.312193!10784-110H1;0.847851!10744-110C6;0.821912!10772-110F7;0.583995!10474-106I6;0.626472!10600-108E6;0.577104!10684-109E9;0.162235!12226-129F3;0.677434!12227-129F4;0.307979!10508-107D4;0.963344!10539-107G8;0.424707!10607-108F4;0.268236!10555-107I6;0.814175!10774-110F9;0.33267!10637-108I7;0.947368!10663-109C6;0.691593!10728-110A8;0.9296!10729-110A9;0.352756!10430-106D7;0.809636!10730-110B1;0.781554!10813-111B3;0.508456!10812-111B2;0.635501!10037-101F1;0.76296!10172-103C1;0.202645!10163-103B1;0.309996!10076-102A4;0.266358!10073-102A1;0.333742!10036-101E9;0.271669!10195-103E6;0.322595!10277-104E7;0.313731!10434-106E2;0.53086!10550-107I1;0.913924!10545-107H5;0.752359!10544-107H4;0.720538!10704-109H2;0.396836!10510-107D6;0.0596553!10558-107I9;0.322842!10020-101D2;0.736256!10732-110B3;0.691644!10049-101G4;0.583019!10698-109G5;0.469466!10437-106E5;0.985598!10417-106C3;0.987346!10035-101E8;0.0751782!10171-103B9;0.258024!10157-103A4;0.437009!10034-101E7;0.302354!10072-101I9;0.282711!10199-103F1;0.286333!10200-103F2;0.701497!10697-109G4;0.707441!10723-110A3;0.966496!10179-103C8;0.645337!10160-103A7;0.565449!10180-103C9;0.139131!10162-103A9;0.975669!10021-101D3;0.274258!10840-111E3;0.503116!10706-109H4;0.588967!10033-101E6;0.829461!10032-101E5;0.383175!10490-107B4;0.304015!10439-106E7;0.922127!10022-101D4;0.140064!10176-103C5;0.816661!10469-106I1;0.289677!10067-101I4;0.211873!10411-106B6;0.869061!10471-106I3;0.47304!10030-101E3;0.203852!10475-106I7;0.501224!10787-110H4;0.922362!10477-106I9;0.80184!10695-109G2;0.775963!11771-123I7;0.59098!11772-123I8;0.366473!11773-123I9;0.642056!10093-102C3;0.583801!10442-106F1;0.816293!10442-106F1;0.945373!10201-103F3;0.897779!10639-108I9;0.83709!11843-124H7;0.305507!11841-124H5;0.939114!10693-109F9;0.611046!10436-106E4;0.483283!10483-107A6;0.849557!10282-104F3;0.613075!10023-101D5;0.591602!10066-101I3;0.847494!10065-101I2;0.99648!10800-110I8;0.927041!10610-108F7;0.994053!10841-111E4;0.237297!10541-107H1;0.783978!10842-111E5;0.356787!10562-108A4;0.624726!10024-101D6;0.469204!10064-101I1;0.785309!10609-108F6;0.722804!10048-101G3;0.983793!10781-110G7;0.935892!10181-103D1;0.557781!10159-103A6;0.671948!10056-101H2;0.339464!10737-110B8;0.450793!10025-101D7;0.912729!10044-101F8;0.64676!10424-106D1;0.442187!10463-106H4;0.663918!10616-108G4;0.383837!10486-107A9;0.391255!10062-101H8;0.603004!10202-103F4;0.940202!10158-103A5;0.812201!10441-106E9;0.394113!10031-101E4;0.319344!10063-101H9;0.317317!10063-101H9;0.181367!11763-123H8;0.866126!11765-123I1;0.412223!11768-123I4;0.689561!10807-111A6;0.232131!10790-110H7;0.208464!10798-110I6;0.639871!10786-110H3;0.904036!10591-108D6;0.767935!10593-108D8;0.504861!10590-108D5;0.672273!10026-101D8;0.989113!10096-102C6;0.806009!10168-103B6;0.314004!10154-103A1;0.394607!10209-103G2;0.273046!10061-101H7;0.756857!10027-101D9;0.975878!10043-101F7;0.79276!10783-110G9;0.801623!10028-101E1;0.666902!10060-101H6;0.870616!10203-103F5;0.781058!10059-101H5;0.52293!10047-101G2;0.66509!10029-101E2;0.962939!10058-101H4;0.912897!10418-106C4;0.899596!10492-107B6;0.215833!10694-109G1;0.976774!10797-110I5;0.737348!10057-101H3;0.799359!10100-102D1;0.509963!10055-101H1;0.545697!10204-103F6;0.901814!10191-103E2;0.660275!10563-108A5;0.974837
|name=CNhs13458_bu_f2
|name=CNhs13458_bu_f2
|tomtom_result=ARO80#MA0273.1;10;0.00255732;1.21729;1;10;GGCAAGAGAT;GATAATTCTCGGCAAGTATGT;+!SPI1#MA0080.1;0;0.00866306;4.12362;1;6;GGCAAGAGAT;CGGAAG;+!Klf4#MA0039.1;3;0.0154594;7.35869;1;7;GGCAAGAGAT;TAAAGGAAGG;+!GAL4#MA0299.1;2;0.0185424;8.82617;1;10;GGCAAGAGAT;CGGGGAACAGTACTC;+!GABPA#MA0062.1;2;0.0198027;9.4261;1;8;GGCAAGAGAT;ACCGGAAGAG;+
}}
}}

Latest revision as of 14:56, 7 September 2012

Full Name: CNhs13458_bu_f2

Motif matrix
POACGT
155.093885733745639.656936405136669139.3972943475590743.76482328654897
28.77880525940556631.865430671207292118.1929166344369489.07578720794058
323.23923798131304107.3110667872912185.5712631672051231.791371837181057
4230.392602882969275.5579987105163287.2371368449459434.725201334558821
5246.004988982943870.20309743719084651.50175591566480020.2030974371908465
63.9364627653528660.16463136913171453240.828179992385322.9836656461204614
7158.63760547835490.620011028269745787.235752881254681.4195703851110777
825.33330023503817781.2968406721403298.6054835094765742.67731535633533
9107.73786802264813105.908373890643499.79180370334680824.474894156352015
1018.16040324496829331.89470551985971395.82385236290426102.03397864525819

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ARO80#MA0273.1100.002557321.21729110GGCAAGAGATGATAATTCTCGGCAAGTATGT+
SPI1#MA0080.100.008663064.1236216GGCAAGAGATCGGAAG+
Klf4#MA0039.130.01545947.3586917GGCAAGAGATTAAAGGAAGG+
GAL4#MA0299.120.01854248.82617110GGCAAGAGATCGGGGAACAGTACTC+
GABPA#MA0062.120.01980279.426118GGCAAGAGATACCGGAAGAG+
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