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MacroAPE 1083:CACACTTTTTA,motif844: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;76.544;358.202;81.328;81.926!2;419.796;63.986;47.242;66.976!3;86.112;444.912;5.98;60.996!4;499.33;86.112;11.96;0.598!5;77.74;399.464;61.594;...")
 
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0255612!10494-107B8;0.669482!10850-111F4;0.255106!10851-111F5;0.905793!10852-111F6;0.29817!10853-111F7;0.461705!10854-111F8;0.255877!10855-111F9;0.630425!10856-111G1;0.215057!10847-111F1;0.934993!10846-111E9;0.0769918!10848-111F2;0.756747!10845-111E8;0.645749!10857-111G2;0.971238!10858-111G3;0.302323!10156-103A3;0.551887!11901-125F2;0.376813!11902-125F3;0.598646!11903-125F4;0.693221!10689-109F5;0.992791!10648-109A9;0.134043!10784-110H1;0.392939!10744-110C6;0.762457!10772-110F7;0.806025!10474-106I6;0.75278!10600-108E6;0.598256!10684-109E9;0.28413!12226-129F3;0.0495904!12227-129F4;0.679782!10508-107D4;0.119561!10539-107G8;0.634547!10607-108F4;0.570418!10555-107I6;0.619653!10774-110F9;0.528197!10637-108I7;0.968582!10663-109C6;0.440043!10728-110A8;0.676303!10729-110A9;0.838294!10430-106D7;0.939767!10730-110B1;0.664452!10813-111B3;0.521085!10812-111B2;0.312106!10037-101F1;0.391205!10172-103C1;0.264253!10163-103B1;0.498345!10076-102A4;0.291393!10073-102A1;0.360995!10036-101E9;0.709712!10195-103E6;0.107814!10277-104E7;0.370882!10434-106E2;0.250569!10550-107I1;0.497573!10545-107H5;0.76697!10544-107H4;0.52561!10704-109H2;0.378995!10510-107D6;0.581066!10558-107I9;0.760904!10020-101D2;0.363454!10732-110B3;0.0269953!10049-101G4;0.35542!10698-109G5;0.093318!10437-106E5;0.85401!10417-106C3;0.696579!10035-101E8;0.298722!10171-103B9;0.265324!10157-103A4;0.40648!10034-101E7;0.370507!10072-101I9;0.176356!10199-103F1;0.960482!10200-103F2;0.749329!10697-109G4;0.470917!10723-110A3;0.188486!10179-103C8;0.961564!10160-103A7;0.885231!10180-103C9;0.86013!10162-103A9;0.895256!10021-101D3;0.823502!10840-111E3;0.947378!10706-109H4;0.215636!10033-101E6;0.587283!10032-101E5;0.192485!10490-107B4;0.173598!10439-106E7;0.381208!10022-101D4;0.270649!10176-103C5;0.216181!10469-106I1;0.455455!10067-101I4;0.368886!10411-106B6;0.523611!10471-106I3;0.237744!10030-101E3;0.229779!10475-106I7;0.879145!10787-110H4;0.804633!10477-106I9;0.738583!10695-109G2;0.760311!11771-123I7;0.603363!11772-123I8;0.172157!11773-123I9;0.268833!10093-102C3;0.181293!10442-106F1;0.992538!10442-106F1;0.0114825!10201-103F3;0.017638!10639-108I9;0.33624!11843-124H7;0.178016!11841-124H5;0.579347!10693-109F9;0.780413!10436-106E4;0.836352!10483-107A6;0.450936!10282-104F3;0.494073!10023-101D5;0.0829255!10066-101I3;0.0696566!10065-101I2;0.367713!10800-110I8;0.345486!10610-108F7;0.896394!10841-111E4;0.975302!10541-107H1;0.921137!10842-111E5;0.426611!10562-108A4;0.730216!10024-101D6;0.0577679!10064-101I1;0.134766!10609-108F6;0.248667!10048-101G3;0.912281!10781-110G7;0.333465!10181-103D1;0.99937!10159-103A6;0.477152!10056-101H2;0.370601!10737-110B8;0.355816!10025-101D7;0.604693!10044-101F8;0.151172!10424-106D1;0.641857!10463-106H4;0.54328!10616-108G4;0.247376!10486-107A9;0.561791!10062-101H8;0.792564!10202-103F4;0.629211!10158-103A5;0.2947!10441-106E9;0.311635!10031-101E4;0.580004!10063-101H9;0.249496!10063-101H9;0.77864!11763-123H8;0.891786!11765-123I1;0.876182!11768-123I4;0.85598!10807-111A6;0.62423!10790-110H7;0.00812999!10798-110I6;0.278428!10786-110H3;0.309655!10591-108D6;0.0821707!10593-108D8;0.089145!10590-108D5;0.0630541!10026-101D8;0.690858!10096-102C6;0.153846!10168-103B6;0.687118!10154-103A1;0.966754!10209-103G2;0.422133!10061-101H7;0.445261!10027-101D9;0.598709!10043-101F7;0.857767!10783-110G9;0.814957!10028-101E1;0.997938!10060-101H6;0.0690939!10203-103F5;0.791438!10059-101H5;0.359486!10047-101G2;0.575246!10029-101E2;0.771184!10058-101H4;0.395638!10418-106C4;0.992074!10492-107B6;0.585911!10694-109G1;0.46486!10797-110I5;0.298569!10057-101H3;0.0736415!10100-102D1;0.82885!10055-101H1;0.623383!10204-103F6;0.441649!10191-103E2;0.429922!10563-108A5;0.59931
|name=CACACTTTTTA,motif844,CNhs13817,T:598.0(15.38%),B:7445.3(9.73%),P:1e-27
|name=CACACTTTTTA,motif844,CNhs13817,T:598.0(15.38%),B:7445.3(9.73%),P:1e-27
|tomtom_result=TBP#MA0108.2;1;0.00292652;1.39302;1;11;CACACTTTTTA;CCCCGCCTTTTATAC;-!TBP#MA0108.2;1;0.00292652;1.39302;1;11;CACACTTTTTA;CCCCGCCTTTTATAC;-!Dof3#MA0021.1;-2;0.00903245;4.29944;1;6;CACACTTTTTA;CGCTTT;-!SUM1#MA0398.1;-1;0.01063;5.0599;1;9;CACACTTTTTA;AAAATTTTT;+!PEND#MA0127.1;-3;0.0110089;5.24025;1;8;CACACTTTTTA;ACTTCTTATT;+!Hltf#MA0109.1;-1;0.0174499;8.30613;1;10;CACACTTTTTA;AACCTTATAT;+
}}
}}

Latest revision as of 14:59, 7 September 2012

Full Name: CACACTTTTTA,motif844,CNhs13817,T:598.0(15.38%),B:7445.3(9.73%),P:1e-27

Motif matrix
POACGT
176.544358.20281.32881.926
2419.79663.98647.24266.976
386.112444.9125.9860.996
4499.3386.11211.960.598
577.74399.46461.59459.202
687.906101.660.598407.836
768.7785.5140.598443.118
813.15655.61480.73448.5
959.20256.21267.574415.012
1080.13216.1460.598501.124
11485.5760.598105.2486.578

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TBP#MA0108.210.002926521.39302111CACACTTTTTACCCCGCCTTTTATAC-
TBP#MA0108.210.002926521.39302111CACACTTTTTACCCCGCCTTTTATAC-
Dof3#MA0021.1-20.009032454.2994416CACACTTTTTACGCTTT-
SUM1#MA0398.1-10.010635.059919CACACTTTTTAAAAATTTTT+
PEND#MA0127.1-30.01100895.2402518CACACTTTTTAACTTCTTATT+
Hltf#MA0109.1-10.01744998.30613110CACACTTTTTAAACCTTATAT+
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