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MacroAPE 1083:PLAG1 f1: Difference between revisions

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7-108E3;0.859745!10717-109I6;0.000121815!10455-106G5;0.0118085!10534-107G3;0.653265!10429-106D6;0.523759!10464-106H5;0.52727!10827-111C8;0.644623!10789-110H6;0.385581!10828-111C9;0.00243409!10788-110H5;0.0157532!10792-110H9;0.16946!10765-110E9;0.170525!10829-111D1;0.160213!10830-111D2;0.747239!10831-111D3;0.978956!10832-111D4;0.127334!10833-111D5;0.0780328!10764-110E8;0.198457!10770-110F5;0.464512!10399-106A3;0.89299!10400-106A4;0.846662!10405-106A9;0.814836!10834-111D6;0.796335!10835-111D7;0.358597!10836-111D8;0.999901!10837-111D9;0.659634!10699-109G6;0.0548923!10802-111A1;0.275432!10796-110I4;0.847654!10010-101C1;0.135793!10810-111A9;0.281934!10421-106C7;0.0779084!10708-109H6;0.229981!12235-129G3;0.030053!12236-129G4;0.394377!12237-129G5;0.572956!10167-103B5;0.674105!10151-102I7;0.101126!10428-106D5;0.0402012!10795-110I3;0.00828552!10805-111A4;0.403521!10052-101G7;0.0340867!10189-103D9;0.428768!10589-108D4;0.0350015!10425-106D2;1.32422e-05!10427-106D4;0.000403033!10702-109G9;0.156976!10432-106D9;0.731167!10496-107C1;0.016491!10718-109I7;0.00241101!10011-101C2;0.258449!10053-101G8;0.12238!10686-109F2;0.342694!10084-102B3;0.0991855!10012-101C3;0.0575396!10085-102B4;0.0644868!10482-107A5;0.0913862!10419-106C5;0.000811583!10080-102A8;0.0182653!10760-110E4;0.550091!10709-109H7;0.00199066!10710-109H8;0.000871036!10703-109H1;0.000150972!10719-109I8;0.0646033!10642-109A3;0.134544!10177-103C6;0.00421364!10164-103B2;0.0806685!10173-103C2;0.0720968!10166-103B4;0.0261565!10083-102B2;0.0122956!10188-103D8;0.0294733!10552-107I3;0.120125!10553-107I4;0.0367648!10013-101C4;0.0501757!10536-107G5;0.151592!10618-108G6;0.00367376!10423-106C9;0.0033613!10785-110H2;0.0177697!12238-129G6;0.610272!12239-129G7;0.395021!12240-129G8;0.150686!10416-106C2;0.201482!10801-110I9;0.25506!10766-110F1;0.134309!10824-111C5;0.176494!10825-111C6;0.540972!10826-111C7;0.553145!10454-106G4;0.629744!10409-106B4;0.827126!10638-108I8;0.252343!10636-108I6;0.0257375!10513-107D9;0.00582035!10420-106C6;0.25617!10082-102B1;0.0488125!10014-101C5;0.650505!10070-101I7;0.0702256!10452-106G2;0.102119!10453-106G3;0.540089!10449-106F8;0.632112!10042-101F6;0.627771!10069-101I6;0.119009!10193-103E4;0.0345578!10631-108I1;0.0693265!10438-106E6;0.759535!10488-107B2;0.0122691!10196-103E7;0.00481558!10071-101I8;0.325587!10071-101I8;0.0374631!10041-101F5;0.113617!10451-106G1;0.194035!10450-106F9;0.121082!10604-108F1;0.0625041!10605-108F2;0.00111402!10606-108F3;0.0356614!10603-108E9;0.00174019!10497-107C2;0.000368745!10448-106F7;0.146984!10643-109A4;0.049024!10426-106D3;0.0472914!10431-106D8;0.256273!10197-103E8;0.00999969!10443-106F2;0.0142357!10815-111B5;0.556094!10816-111B6;0.547986!10817-111B7;0.546963!10015-101C6;0.387426!10410-106B5;0.274007!10054-101G9;0.0947773!10758-110E2;0.454551!10711-109H9;0.00851209!10040-101F4;0.0504898!10470-106I2;0.0478183!10415-106C1;0.0635769!10198-103E9;0.0519879!10614-108G2;0.0924194!10612-108F9;0.0743622!10549-107H9;0.0112077!10615-108G3;0.0833548!10487-107B1;0.0132872!10433-106E1;0.402097!10688-109F4;0.000627193!10444-106F3;0.0529556!10444-106F3;7.13029e-07!10485-107A8;4.89879e-06!10413-106B8;0.279894!10175-103C4;0.479811!10161-103A8;0.0253459!12131-128D7;0.00980536!10624-108H3;0.0441635!10712-109I1;0.00130402!10205-103F7;0.246632!10206-103F8;0.548042!10207-103F9;0.764526!10050-101G5;0.253986!10051-101G6;0.663973!10016-101C7;0.493794!10046-101G1;0.909323!10778-110G4;0.364385!10633-108I3;0.321613!10818-111B8;0.0119049!10819-111B9;0.618134!10820-111C1;0.733894!10484-107A7;0.618824!10808-111A7;0.0212175!10169-103B7;0.50584!10153-102I9;0.099551!13425-144D5;0.0392144!13433-144E4;0.543221!13437-144E8;0.468974!11904-125F5;0.742643!11905-125F6;0.645407!10039-101F3;0.210504!10791-110H8;0.0574683!10017-101C8;0.0138245!10045-101F9;0.183971!10509-107D5;0.0323884!10839-111E2;0.0821072!10692-109F8;0.0269627!10079-102A7;0.0138442!10078-102A6;0.374291!10721-110A1;0.456118!10569-108B2;0.0709486!10570-108B3;0.0612803!10571-108B4;0.0613399!10647-109A8;0.0547933!10752-110D5;0.00726831!10782-110G8;0.191434!10726-110A6;0.042533!10018-101C9;0.462614!10086-102B5;0.0655528!10182-103D2;0.0103063!10165-103B3;0.026257!10499-107C4;0.0285128!10408-106B3;0.000155402!10019-101D1;0.022414!10068-101I5;0.101772!10075-102A3;0.0126929!10077-102A5;0.21577!10727-110A7;0.0341804!10775-110G1;0.788788!10412-106B7;0.452959!12231-129F8;0.0355622!12232-129F9;0.018948!12233-129G1;0.299519!12234-129G2;0.16177!10414-106B9;0.00350866!10170-103B8;0.00721825!10183-103D3;0.0682825!10150-102I6;0.0558346!10174-103C3;0.0293271!10155-103A2;0.0958709!10038-101F2;0.0777209!10838-111E1;0.143739!10759-110E3;0.0381035!10514-107E1;0.0001743!10465-106H6;0.0579515!10691-109F7;0.0250384!10843-111E6;0.299586!10844-111E7;0.0191401!11747-123G1;0.05684!11748-123G2;0.0232136!11749-123G3;0.0124038!11750-123G4;0.013685!11751-123G5;0.216813!11840-124H4;0.217975!11752-123G6;0.0237832!11753-123G7;0.106912!11754-123G8;0.100537!11755-123G9;0.0312438!11756-123H1;0.109545!11833-124G6;0.480694!11760-123H5;0.130106!11836-124G9;0.333464!11758-123H3;0.0179131!11835-124G8;0.389141!11762-123H7;0.0910332!11838-124H2;0.222327!11757-123H2;0.292671!11759-123H4;0.146404!11761-123H6;0.185446!11842-124H6;0.238359!11837-124H1;0.47823!10568-108B1;0.187372!13230-141I8;0.904112!13231-141I9;0.0856076!10696-109G3;0.0573097!10493-107B7;0.0421045!10494-107B8;0.177572!10850-111F4;0.280985!10851-111F5;0.204386!10852-111F6;0.745719!10853-111F7;0.402361!10854-111F8;0.746052!10855-111F9;0.206998!10856-111G1;0.00910823!10847-111F1;0.857765!10846-111E9;0.0954814!10848-111F2;0.98916!10845-111E8;0.181951!10857-111G2;0.000651748!10858-111G3;0.592326!10156-103A3;0.411319!11901-125F2;0.02711!11902-125F3;0.864921!11903-125F4;0.789897!10689-109F5;0.918997!10648-109A9;0.645196!10784-110H1;0.0502835!10744-110C6;0.00706838!10772-110F7;0.216594!10474-106I6;0.540315!10600-108E6;0.258159!10684-109E9;0.0162689!12226-129F3;0.366657!12227-129F4;0.0451058!10508-107D4;0.0367695!10539-107G8;0.124455!10607-108F4;0.152717!10555-107I6;0.226856!10774-110F9;0.173238!10637-108I7;0.888226!10663-109C6;0.596982!10728-110A8;0.695379!10729-110A9;0.228763!10430-106D7;0.436158!10730-110B1;0.0525298!10813-111B3;0.00148394!10812-111B2;0.0534486!10037-101F1;0.219686!10172-103C1;0.0686975!10163-103B1;0.0441704!10076-102A4;0.0167661!10073-102A1;0.0536154!10036-101E9;0.064415!10195-103E6;0.056468!10277-104E7;0.0723164!10434-106E2;0.0104074!10550-107I1;0.0201905!10545-107H5;0.0130764!10544-107H4;0.0745943!10704-109H2;0.000897765!10510-107D6;0.0151572!10558-107I9;0.004144!10020-101D2;0.848186!10732-110B3;0.0593484!10049-101G4;0.0582815!10698-109G5;0.709647!10437-106E5;0.0112184!10417-106C3;0.0275588!10035-101E8;0.16125!10171-103B9;0.0391239!10157-103A4;0.0446103!10034-101E7;0.0363567!10072-101I9;0.0390344!10199-103F1;0.0685288!10200-103F2;0.390859!10697-109G4;0.0970254!10723-110A3;0.626837!10179-103C8;0.0233531!10160-103A7;0.158207!10180-103C9;0.140883!10162-103A9;0.116079!10021-101D3;0.0568009!10840-111E3;0.108482!10706-109H4;0.422824!10033-101E6;0.37692!10032-101E5;0.0142451!10490-107B4;0.063479!10439-106E7;0.147328!10022-101D4;0.0158091!10176-103C5;0.154335!10469-106I1;0.0580808!10067-101I4;0.242588!10411-106B6;0.767016!10471-106I3;0.309914!10030-101E3;0.735556!10475-106I7;0.345458!10787-110H4;0.011238!10477-106I9;0.579873!10695-109G2;0.773076!11771-123I7;0.561681!11772-123I8;0.00119147!11773-123I9;0.0246793!10093-102C3;1.75644e-05!10442-106F1;0.934586!10442-106F1;0.137323!10201-103F3;0.137299!10639-108I9;0.0448091!11843-124H7;0.0115341!11841-124H5;0.0683367!10693-109F9;0.0459272!10436-106E4;0.00161454!10483-107A6;0.821128!10282-104F3;0.134328!10023-101D5;0.952004!10066-101I3;0.449363!10065-101I2;0.0339679!10800-110I8;0.113176!10610-108F7;0.00223509!10841-111E4;0.0305541!10541-107H1;0.105811!10842-111E5;0.035087!10562-108A4;0.02872!10024-101D6;0.000680842!10064-101I1;0.0183148!10609-108F6;0.00817603!10048-101G3;3.78833e-06!10781-110G7;0.607823!10181-103D1;3.89069e-05!10159-103A6;0.0738143!10056-101H2;0.0245735!10737-110B8;0.575543!10025-101D7;0.00821152!10044-101F8;0.0251372!10424-106D1;0.00223307!10463-106H4;0.536946!10616-108G4;0.000300034!10486-107A9;0.0118058!10062-101H8;0.0437819!10202-103F4;0.731274!10158-103A5;0.606667!10441-106E9;0.00486877!10031-101E4;0.383852!10063-101H9;0.0932662!10063-101H9;0.0640386!11763-123H8;0.0162814!11765-123I1;0.165104!11768-123I4;0.0950635!10807-111A6;0.102758!10790-110H7;0.00878832!10798-110I6;0.139138!10786-110H3;0.426281!10591-108D6;0.0232825!10593-108D8;0.0887106!10590-108D5;0.00830906!10026-101D8;0.150759!10096-102C6;0.00920599!10168-103B6;0.954211!10154-103A1;0.0304976!10209-103G2;0.0168614!10061-101H7;0.0369561!10027-101D9;0.108441!10043-101F7;0.302284!10783-110G9;0.0012192!10028-101E1;0.0721925!10060-101H6;0.849788!10203-103F5;0.584258!10059-101H5;0.11511!10047-101G2;0.183149!10029-101E2;0.0227748!10058-101H4;0.0729324!10418-106C4;0.160275!10492-107B6;0.00688939!10694-109G1;0.0105356!10797-110I5;0.335461!10057-101H3;0.0242542!10100-102D1;0.0290015!10055-101H1;0.350077!10204-103F6;0.457553!10191-103E2;0.210804!10563-108A5;0.0105372
|name=PLAG1_f1
|name=PLAG1_f1
|tomtom_result=YGR067C#MA0425.1;-4;2.67769e-05;0.0127458;0.0172596;13;GGGGGCATCAGGAGGGG;TGAAAAAGTGGGGT;-!MSN4#MA0342.1;-12;4.34581e-05;0.020686;0.0172596;5;GGGGGCATCAGGAGGGG;AGGGG;+!Pax4#MA0068.1;4;5.51788e-05;0.0262651;0.0172596;17;GGGGGCATCAGGAGGGG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!RGM1#MA0366.1;-12;8.98479e-05;0.0427676;0.0208549;5;GGGGGCATCAGGAGGGG;AGGGG;+!MSN2#MA0341.1;-12;0.000122951;0.0585247;0.0208549;5;GGGGGCATCAGGAGGGG;AGGGG;+!MZF1_5-13#MA0057.1;-10;0.000133346;0.0634727;0.0208549;7;GGGGGCATCAGGAGGGG;GGAGGGGGAA;+!PLAG1#MA0163.1;-1;0.000191292;0.0910548;0.0256436;14;GGGGGCATCAGGAGGGG;GGGGCCCAAGGGGG;+!GIS1#MA0306.1;-9;0.000459004;0.218486;0.0469188;8;GGGGGCATCAGGAGGGG;TTTAGGGGT;-!YER130C#MA0423.1;-9;0.000499996;0.237998;0.0469188;8;GGGGGCATCAGGAGGGG;AATAGGGGT;-!YML081W#MA0431.1;-9;0.000499996;0.237998;0.0469188;8;GGGGGCATCAGGAGGGG;GTGCGGGGT;-!RXR::RAR_DR5#MA0159.1;-1;0.0011888;0.565868;0.101414;16;GGGGGCATCAGGAGGGG;AGGTCATGGAGAGGTCA;+!Pax5#MA0014.1;0;0.00212882;1.01332;0.166471;17;GGGGGCATCAGGAGGGG;GGAGCACTGAAGCGTAACCG;+!SP1#MA0079.2;-7;0.00254779;1.21275;0.183908;10;GGGGGCATCAGGAGGGG;GGGGGCGGGG;-!MIG2#MA0338.1;-10;0.00387771;1.84579;0.259913;7;GGGGGCATCAGGAGGGG;TGCGGGG;-!ADR1#MA0268.1;-11;0.00444295;2.11485;0.263738;6;GGGGGCATCAGGAGGGG;GTGGGGT;-!Kr#MA0452.1;-8;0.00449689;2.14052;0.263738;9;GGGGGCATCAGGAGGGG;CAAAAGGGTTA;+!MIG3#MA0339.1;-10;0.00579361;2.75776;0.302035;7;GGGGGCATCAGGAGGGG;TGCGGGG;-!YPR022C#MA0436.1;-10;0.00579361;2.75776;0.302035;7;GGGGGCATCAGGAGGGG;CGTGGGG;-!ZMS1#MA0441.1;-10;0.00627664;2.98768;0.309995;7;GGGGGCATCAGGAGGGG;TGCGGGGAA;-!MZF1_1-4#MA0056.1;-12;0.00697983;3.3224;0.327488;5;GGGGGCATCAGGAGGGG;TGGGGA;+!SP1#MA0079.2;-8;0.00797953;3.79826;0.356565;9;GGGGGCATCAGGAGGGG;GGGGCGGGGT;+!MIG1#MA0337.1;-11;0.00960381;4.57141;0.392697;6;GGGGGCATCAGGAGGGG;GCGGGGG;-!Zfp423#MA0116.1;-3;0.00962509;4.58154;0.392697;14;GGGGGCATCAGGAGGGG;GGCACCCAGGGGTGC;+!RPH1#MA0372.1;-10;0.0101148;4.81462;0.39548;7;GGGGGCATCAGGAGGGG;TTAGGGGT;-!SUT1#MA0399.1;-10;0.0115082;5.47789;0.41109;7;GGGGGCATCAGGAGGGG;CGCGGGG;+!Klf4#MA0039.1;-6;0.0115515;5.49849;0.41109;10;GGGGGCATCAGGAGGGG;TAAAGGAAGG;+!TBF1#MA0403.1;-10;0.0121203;5.76926;0.41109;7;GGGGGCATCAGGAGGGG;TTAGGGTT;-!btd#MA0443.1;-11;0.0122663;5.83876;0.41109;6;GGGGGCATCAGGAGGGG;AGGGGGCGGA;+!RDS2#MA0362.1;-10;0.0129572;6.16762;0.41927;7;GGGGGCATCAGGAGGGG;CTCGGGG;+!REI1#MA0364.1;-10;0.0184012;8.75897;0.575579;7;GGGGGCATCAGGAGGGG;TCAGGGG;-
}}
}}

Latest revision as of 15:01, 7 September 2012

Full Name: PLAG1_f1

Motif matrix
POACGT
15.50.516.52.5
25.00.020.00.0
310.00.015.00.0
40.00.025.00.0
50.08.017.00.0
61.014.0000000000000027.0000000000000013.0
713.09.02.01.0
85.08.03.09.0
95.08.06.06.0
1011.02.05.07.000000000000001
118.06.011.00.0
124.02.012.07.000000000000001
1317.04.03.01.0
142.00.020.03.0
151.00.024.00.0
160.00.025.00.0
172.01.017.05.0

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YGR067C#MA0425.1-42.67769e-050.01274580.017259613GGGGGCATCAGGAGGGGTGAAAAAGTGGGGT-
MSN4#MA0342.1-124.34581e-050.0206860.01725965GGGGGCATCAGGAGGGGAGGGG+
Pax4#MA0068.145.51788e-050.02626510.017259617GGGGGCATCAGGAGGGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
RGM1#MA0366.1-128.98479e-050.04276760.02085495GGGGGCATCAGGAGGGGAGGGG+
MSN2#MA0341.1-120.0001229510.05852470.02085495GGGGGCATCAGGAGGGGAGGGG+
MZF1_5-13#MA0057.1-100.0001333460.06347270.02085497GGGGGCATCAGGAGGGGGGAGGGGGAA+
PLAG1#MA0163.1-10.0001912920.09105480.025643614GGGGGCATCAGGAGGGGGGGGCCCAAGGGGG+
GIS1#MA0306.1-90.0004590040.2184860.04691888GGGGGCATCAGGAGGGGTTTAGGGGT-
YER130C#MA0423.1-90.0004999960.2379980.04691888GGGGGCATCAGGAGGGGAATAGGGGT-
YML081W#MA0431.1-90.0004999960.2379980.04691888GGGGGCATCAGGAGGGGGTGCGGGGT-
RXR::RAR_DR5#MA0159.1-10.00118880.5658680.10141416GGGGGCATCAGGAGGGGAGGTCATGGAGAGGTCA+
Pax5#MA0014.100.002128821.013320.16647117GGGGGCATCAGGAGGGGGGAGCACTGAAGCGTAACCG+
SP1#MA0079.2-70.002547791.212750.18390810GGGGGCATCAGGAGGGGGGGGGCGGGG-
MIG2#MA0338.1-100.003877711.845790.2599137GGGGGCATCAGGAGGGGTGCGGGG-
ADR1#MA0268.1-110.004442952.114850.2637386GGGGGCATCAGGAGGGGGTGGGGT-
Kr#MA0452.1-80.004496892.140520.2637389GGGGGCATCAGGAGGGGCAAAAGGGTTA+
MIG3#MA0339.1-100.005793612.757760.3020357GGGGGCATCAGGAGGGGTGCGGGG-
YPR022C#MA0436.1-100.005793612.757760.3020357GGGGGCATCAGGAGGGGCGTGGGG-
ZMS1#MA0441.1-100.006276642.987680.3099957GGGGGCATCAGGAGGGGTGCGGGGAA-
MZF1_1-4#MA0056.1-120.006979833.32240.3274885GGGGGCATCAGGAGGGGTGGGGA+
SP1#MA0079.2-80.007979533.798260.3565659GGGGGCATCAGGAGGGGGGGGCGGGGT+
MIG1#MA0337.1-110.009603814.571410.3926976GGGGGCATCAGGAGGGGGCGGGGG-
Zfp423#MA0116.1-30.009625094.581540.39269714GGGGGCATCAGGAGGGGGGCACCCAGGGGTGC+
RPH1#MA0372.1-100.01011484.814620.395487GGGGGCATCAGGAGGGGTTAGGGGT-
SUT1#MA0399.1-100.01150825.477890.411097GGGGGCATCAGGAGGGGCGCGGGG+
Klf4#MA0039.1-60.01155155.498490.4110910GGGGGCATCAGGAGGGGTAAAGGAAGG+
TBF1#MA0403.1-100.01212035.769260.411097GGGGGCATCAGGAGGGGTTAGGGTT-
btd#MA0443.1-110.01226635.838760.411096GGGGGCATCAGGAGGGGAGGGGGCGGA+
RDS2#MA0362.1-100.01295726.167620.419277GGGGGCATCAGGAGGGGCTCGGGG+
REI1#MA0364.1-100.01840128.758970.5755797GGGGGCATCAGGAGGGGTCAGGGG-
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