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MacroAPE 1083:ACGAGACGGATGA,motif936: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2139.45;372.516;2.517;2.517!2;188.775;1560.54;375.033;392.652!3;2.517;2.517;2509.449;2.517!4;2141.967;186.258;2.517;186.258!5;2.517;2.517;25...")
 
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9!10597-108E3;0.0122307!10717-109I6;0.124854!10455-106G5;0.0640327!10534-107G3;0.242781!10429-106D6;0.258649!10464-106H5;0.187853!10827-111C8;0.842169!10789-110H6;0.0606879!10828-111C9;0.290124!10788-110H5;0.101221!10792-110H9;0.086305!10765-110E9;0.0757299!10829-111D1;0.0865096!10830-111D2;0.0551856!10831-111D3;0.093647!10832-111D4;0.0883268!10833-111D5;0.201953!10764-110E8;0.206121!10770-110F5;0.0337822!10399-106A3;0.254974!10400-106A4;0.00187906!10405-106A9;0.00167349!10834-111D6;0.000947216!10835-111D7;0.12507!10836-111D8;0.0205465!10837-111D9;0.0014471!10699-109G6;0.118074!10802-111A1;0.176654!10796-110I4;0.0604632!10010-101C1;0.53738!10810-111A9;0.847009!10421-106C7;0.252714!10708-109H6;0.279897!12235-129G3;0.894702!12236-129G4;0.878901!12237-129G5;0.605838!10167-103B5;0.908249!10151-102I7;0.694833!10428-106D5;0.527105!10795-110I3;0.709899!10805-111A4;0.0812927!10052-101G7;0.993669!10189-103D9;0.246555!10589-108D4;0.278372!10425-106D2;0.410292!10427-106D4;0.310962!10702-109G9;0.147471!10432-106D9;0.968162!10496-107C1;0.869015!10718-109I7;0.0564469!10011-101C2;0.0950411!10053-101G8;0.497723!10686-109F2;0.30764!10084-102B3;0.966021!10012-101C3;0.220262!10085-102B4;0.426105!10482-107A5;0.442226!10419-106C5;0.0248074!10080-102A8;0.15797!10760-110E4;0.183529!10709-109H7;0.693299!10710-109H8;0.641004!10703-109H1;0.624687!10719-109I8;0.0736384!10642-109A3;0.623342!10177-103C6;0.895829!10164-103B2;0.411507!10173-103C2;0.494624!10166-103B4;0.577524!10083-102B2;0.501307!10188-103D8;0.342937!10552-107I3;0.814773!10553-107I4;0.797452!10013-101C4;0.410938!10536-107G5;0.110443!10618-108G6;0.695733!10423-106C9;0.554932!10785-110H2;0.395108!12238-129G6;0.815357!12239-129G7;0.945796!12240-129G8;0.37774!10416-106C2;0.904058!10801-110I9;0.520564!10766-110F1;0.00718747!10824-111C5;0.00289684!10825-111C6;0.0028021!10826-111C7;0.00224237!10454-106G4;0.00144746!10409-106B4;0.00705186!10638-108I8;0.00201069!10636-108I6;0.901354!10513-107D9;0.989842!10420-106C6;0.409354!10082-102B1;0.620182!10014-101C5;0.0184329!10070-101I7;0.163543!10452-106G2;0.266034!10453-106G3;0.326148!10449-106F8;0.475973!10042-101F6;0.544367!10069-101I6;0.066371!10193-103E4;0.936639!10631-108I1;0.412986!10438-106E6;0.280363!10488-107B2;0.902091!10196-103E7;0.627752!10071-101I8;0.0846576!10071-101I8;0.0686372!10041-101F5;0.919662!10451-106G1;0.705367!10450-106F9;0.822711!10604-108F1;0.92232!10605-108F2;0.729949!10606-108F3;0.845315!10603-108E9;0.945989!10497-107C2;0.532316!10448-106F7;0.894414!10643-109A4;0.768449!10426-106D3;0.550066!10431-106D8;0.620423!10197-103E8;0.979423!10443-106F2;0.285525!10815-111B5;0.88564!10816-111B6;0.670373!10817-111B7;0.612195!10015-101C6;0.771623!10410-106B5;0.213133!10054-101G9;0.0562687!10758-110E2;0.0380474!10711-109H9;0.882604!10040-101F4;0.731559!10470-106I2;0.448301!10415-106C1;0.119978!10198-103E9;0.794283!10614-108G2;0.129148!10612-108F9;0.546305!10549-107H9;0.855803!10615-108G3;0.204514!10487-107B1;0.810115!10433-106E1;0.577871!10688-109F4;0.309333!10444-106F3;0.580558!10444-106F3;0.754954!10485-107A8;0.676487!10413-106B8;0.822511!10175-103C4;0.875583!10161-103A8;0.102215!12131-128D7;0.119386!10624-108H3;0.0349262!10712-109I1;0.828638!10205-103F7;0.0796513!10206-103F8;0.778183!10207-103F9;0.903723!10050-101G5;0.362044!10051-101G6;0.276117!10016-101C7;0.466448!10046-101G1;0.935351!10778-110G4;0.909731!10633-108I3;0.396476!10818-111B8;0.264713!10819-111B9;0.777939!10820-111C1;0.861413!10484-107A7;0.753479!10808-111A7;0.792764!10169-103B7;0.229262!10153-102I9;0.76469!13425-144D5;0.432295!13433-144E4;0.963281!13437-144E8;0.964358!11904-125F5;0.851587!11905-125F6;4.55351e-06!10039-101F3;0.0260038!10791-110H8;0.332151!10017-101C8;0.300835!10045-101F9;0.0368188!10509-107D5;0.00598758!10839-111E2;0.45825!10692-109F8;0.0144285!10079-102A7;0.386789!10078-102A6;0.690322!10721-110A1;0.829677!10569-108B2;0.00461!10570-108B3;0.619742!10571-108B4;0.67861!10647-109A8;0.696636!10752-110D5;0.643666!10782-110G8;0.000171064!10726-110A6;0.791539!10018-101C9;0.444214!10086-102B5;0.605941!10182-103D2;0.34794!10165-103B3;0.13743!10499-107C4;0.145982!10408-106B3;0.631824!10019-101D1;0.213502!10068-101I5;0.239607!10075-102A3;0.961279!10077-102A5;0.103649!10727-110A7;0.804676!10775-110G1;0.84785!10412-106B7;0.118509!12231-129F8;0.523408!12232-129F9;0.559717!12233-129G1;0.549254!12234-129G2;0.471999!10414-106B9;0.330444!10170-103B8;0.107302!10183-103D3;0.534124!10150-102I6;0.531599!10174-103C3;0.41937!10155-103A2;0.0926176!10038-101F2;0.105361!10838-111E1;0.0705106!10759-110E3;0.632134!10514-107E1;0.184448!10465-106H6;0.23984!10691-109F7;0.318414!10843-111E6;0.602094!10844-111E7;0.872964!11747-123G1;0.144195!11748-123G2;0.981827!11749-123G3;0.866842!11750-123G4;0.665232!11751-123G5;0.87316!11840-124H4;0.884917!11752-123G6;0.389101!11753-123G7;0.820056!11754-123G8;0.789528!11755-123G9;0.870653!11756-123H1;0.971692!11833-124G6;0.516996!11760-123H5;0.978435!11836-124G9;0.933775!11758-123H3;0.611076!11835-124G8;0.716452!11762-123H7;0.139404!11838-124H2;0.295044!11757-123H2;0.490979!11759-123H4;0.821617!11761-123H6;0.781116!11842-124H6;0.531911!11837-124H1;0.497927!10568-108B1;0.204935!13230-141I8;0.97352!13231-141I9;0.540055!10696-109G3;0.648156!10493-107B7;0.420837!10494-107B8;0.933687!10850-111F4;0.42701!10851-111F5;0.555214!10852-111F6;0.714357!10853-111F7;0.94451!10854-111F8;0.805766!10855-111F9;0.853499!10856-111G1;0.0132123!10847-111F1;0.191291!10846-111E9;0.576722!10848-111F2;0.842966!10845-111E8;0.497618!10857-111G2;0.162231!10858-111G3;0.240906!10156-103A3;0.653132!11901-125F2;0.328486!11902-125F3;5.54813e-05!11903-125F4;0.000103805!10689-109F5;0.000270435!10648-109A9;0.414631!10784-110H1;0.327469!10744-110C6;0.451903!10772-110F7;0.240458!10474-106I6;0.0375673!10600-108E6;0.392892!10684-109E9;0.831189!12226-129F3;0.75282!12227-129F4;0.704001!10508-107D4;0.664108!10539-107G8;0.962229!10607-108F4;0.0960893!10555-107I6;0.479875!10774-110F9;0.565502!10637-108I7;0.524772!10663-109C6;0.636086!10728-110A8;0.755274!10729-110A9;0.400302!10430-106D7;0.800771!10730-110B1;0.20939!10813-111B3;0.758523!10812-111B2;0.668604!10037-101F1;0.648945!10172-103C1;0.350599!10163-103B1;0.597057!10076-102A4;0.311436!10073-102A1;0.726093!10036-101E9;0.94231!10195-103E6;0.0990916!10277-104E7;0.457623!10434-106E2;0.452893!10550-107I1;0.827981!10545-107H5;0.659309!10544-107H4;0.542451!10704-109H2;0.675427!10510-107D6;0.529302!10558-107I9;0.83018!10020-101D2;0.52346!10732-110B3;0.365766!10049-101G4;0.55061!10698-109G5;0.0172766!10437-106E5;0.182535!10417-106C3;0.224984!10035-101E8;0.655787!10171-103B9;0.360841!10157-103A4;0.477019!10034-101E7;0.379417!10072-101I9;0.271897!10199-103F1;0.911035!10200-103F2;0.250996!10697-109G4;0.519956!10723-110A3;0.449852!10179-103C8;0.186506!10160-103A7;0.444287!10180-103C9;0.342469!10162-103A9;0.816201!10021-101D3;0.419711!10840-111E3;0.134738!10706-109H4;0.568879!10033-101E6;0.526699!10032-101E5;0.175476!10490-107B4;0.161641!10439-106E7;0.980439!10022-101D4;0.270175!10176-103C5;0.144912!10469-106I1;0.444134!10067-101I4;0.859343!10411-106B6;0.128559!10471-106I3;0.608466!10030-101E3;0.206013!10475-106I7;0.00656856!10787-110H4;0.477392!10477-106I9;0.237097!10695-109G2;0.289104!11771-123I7;0.646555!11772-123I8;0.616614!11773-123I9;0.845386!10093-102C3;0.93643!10442-106F1;0.110629!10442-106F1;0.140467!10201-103F3;0.211891!10639-108I9;0.267275!11843-124H7;0.979208!11841-124H5;0.548143!10693-109F9;0.695668!10436-106E4;0.65573!10483-107A6;0.460181!10282-104F3;0.298894!10023-101D5;0.341242!10066-101I3;0.934536!10065-101I2;0.385808!10800-110I8;0.587648!10610-108F7;0.519484!10841-111E4;0.101312!10541-107H1;0.561759!10842-111E5;0.0246686!10562-108A4;0.580483!10024-101D6;0.332475!10064-101I1;0.248128!10609-108F6;0.0319638!10048-101G3;0.835125!10781-110G7;0.633079!10181-103D1;0.779734!10159-103A6;0.169169!10056-101H2;0.223343!10737-110B8;0.151673!10025-101D7;0.915451!10044-101F8;0.613499!10424-106D1;0.430371!10463-106H4;0.233124!10616-108G4;0.591218!10486-107A9;0.908655!10062-101H8;0.260405!10202-103F4;0.454448!10158-103A5;0.0852104!10441-106E9;0.212558!10031-101E4;0.384065!10063-101H9;0.108189!10063-101H9;0.780116!11763-123H8;0.0396846!11765-123I1;0.445935!11768-123I4;0.0790707!10807-111A6;0.401577!10790-110H7;0.230755!10798-110I6;0.290445!10786-110H3;0.492966!10591-108D6;0.784448!10593-108D8;0.273069!10590-108D5;0.325874!10026-101D8;0.141379!10096-102C6;0.094143!10168-103B6;0.0852933!10154-103A1;0.162895!10209-103G2;0.141007!10061-101H7;0.56383!10027-101D9;0.431588!10043-101F7;0.753184!10783-110G9;0.886892!10028-101E1;0.710151!10060-101H6;0.331432!10203-103F5;0.837124!10059-101H5;0.847383!10047-101G2;0.48565!10029-101E2;0.0625508!10058-101H4;0.36207!10418-106C4;0.585749!10492-107B6;0.445738!10694-109G1;0.971161!10797-110I5;0.863465!10057-101H3;0.831047!10100-102D1;0.539768!10055-101H1;0.225092!10204-103F6;0.387291!10191-103E2;0.342535!10563-108A5;0.325619
|name=ACGAGACGGATGA,motif936,CNhs13469,T:2517.0(39.98%),B:26480.2(33.41%),P:1e-27
|name=ACGAGACGGATGA,motif936,CNhs13469,T:2517.0(39.98%),B:26480.2(33.41%),P:1e-27
|tomtom_result=Myb#MA0100.1;-4;0.00535762;2.55023;1;8;ACGAGACGGATGA;GGCCGTTG;+!ETS1#MA0098.1;-6;0.00673958;3.20804;1;6;ACGAGACGGATGA;CGGAAA;-!id1#MA0120.1;-1;0.00676154;3.2185;1;12;ACGAGACGGATGA;CGAAAAGGAAAA;-!ELK1#MA0028.1;-2;0.00746821;3.55487;1;10;ACGAGACGGATGA;GAGCCGGAAG;+
}}
}}

Latest revision as of 15:02, 7 September 2012

Full Name: ACGAGACGGATGA,motif936,CNhs13469,T:2517.0(39.98%),B:26480.2(33.41%),P:1e-27

Motif matrix
POACGT
12139.45372.5162.5172.517
2188.7751560.54375.033392.652
32.5172.5172509.4492.517
42141.967186.2582.517186.258
52.5172.5172509.4492.517
61953.1922.517375.033186.258
7375.0331953.192186.2582.517
8392.652375.0331746.7982.517
92.517186.2582325.7082.517
102325.7082.517186.2582.517
11561.2912.5172.5171950.675
122.517186.2582325.7082.517
132325.7082.5172.517186.258

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Myb#MA0100.1-40.005357622.5502318ACGAGACGGATGAGGCCGTTG+
ETS1#MA0098.1-60.006739583.2080416ACGAGACGGATGACGGAAA-
id1#MA0120.1-10.006761543.2185112ACGAGACGGATGACGAAAAGGAAAA-
ELK1#MA0028.1-20.007468213.55487110ACGAGACGGATGAGAGCCGGAAG+
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