MacroAPE 1083:DMC1 Testis-DMC1-ChIP-Seq/Homer: Difference between revisions
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(Created page with "{{Macroape_1083
|PWM=PO;A;C;G;T!1;674;152;320;252!2;359;748;123;168!3;150;358;1;889!4;50;737;77;534!5;315;218;333;532!6;463;401;275;259!7;945;112;226;115!8;52;204;439;703!9;7...") |
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2905!11757-123H2;0.683307!11759-123H4;0.391857!11761-123H6;0.359052!11842-124H6;0.548681!11837-124H1;0.296057!10568-108B1;0.348009!13230-141I8;0.07431!13231-141I9;0.65994!10696-109G3;0.767567!10493-107B7;0.754366!10494-107B8;0.0560725!10850-111F4;0.340531!10851-111F5;0.00389978!10852-111F6;0.162122!10853-111F7;0.235744!10854-111F8;0.234764!10855-111F9;0.288371!10856-111G1;0.810045!10847-111F1;0.0586037!10846-111E9;0.00533587!10848-111F2;0.152168!10845-111E8;0.0407477!10857-111G2;0.939319!10858-111G3;0.0226625!10156-103A3;0.00591502!11901-125F2;0.408693!11902-125F3;0.0828292!11903-125F4;0.166443!10689-109F5;0.217304!10648-109A9;0.0202241!10784-110H1;0.00521566!10744-110C6;0.838704!10772-110F7;0.121462!10474-106I6;0.238874!10600-108E6;0.734941!10684-109E9;0.114052!12226-129F3;0.66412!12227-129F4;0.440996!10508-107D4;0.0718625!10539-107G8;0.884395!10607-108F4;0.870051!10555-107I6;0.173492!10774-110F9;0.874737!10637-108I7;0.277763!10663-109C6;0.267896!10728-110A8;0.475286!10729-110A9;0.211228!10430-106D7;0.445246!10730-110B1;0.689146!10813-111B3;0.417266!10812-111B2;0.744717!10037-101F1;0.404039!10172-103C1;0.574357!10163-103B1;0.256921!10076-102A4;0.527399!10073-102A1;0.410391!10036-101E9;0.370544!10195-103E6;0.66314!10277-104E7;0.436284!10434-106E2;0.544858!10550-107I1;0.871861!10545-107H5;0.469278!10544-107H4;0.917627!10704-109H2;0.34267!10510-107D6;0.493955!10558-107I9;0.0123918!10020-101D2;0.179267!10732-110B3;0.13023!10049-101G4;0.0248496!10698-109G5;0.105798!10437-106E5;0.381562!10417-106C3;0.363386!10035-101E8;0.664613!10171-103B9;0.468927!10157-103A4;0.360365!10034-101E7;0.385329!10072-101I9;0.459964!10199-103F1;0.451311!10200-103F2;0.696736!10697-109G4;0.279923!10723-110A3;0.803007!10179-103C8;0.999389!10160-103A7;0.873802!10180-103C9;0.963133!10162-103A9;0.164526!10021-101D3;0.194673!10840-111E3;0.230153!10706-109H4;0.671169!10033-101E6;0.264337!10032-101E5;0.598541!10490-107B4;0.534013!10439-106E7;0.935699!10022-101D4;0.149455!10176-103C5;0.45845!10469-106I1;0.357143!10067-101I4;0.609908!10411-106B6;0.380262!10471-106I3;0.18264!10030-101E3;0.608795!10475-106I7;0.33672!10787-110H4;0.0505357!10477-106I9;0.217605!10695-109G2;0.104168!11771-123I7;0.669531!11772-123I8;0.318844!11773-123I9;0.842198!10093-102C3;0.805148!10442-106F1;0.945811!10442-106F1;0.0309685!10201-103F3;0.0789257!10639-108I9;0.112617!11843-124H7;0.175572!11841-124H5;0.732619!10693-109F9;0.653306!10436-106E4;0.23273!10483-107A6;0.307136!10282-104F3;0.440182!10023-101D5;0.244103!10066-101I3;0.620937!10065-101I2;0.23959!10800-110I8;0.843233!10610-108F7;0.0576348!10841-111E4;0.186673!10541-107H1;0.578509!10842-111E5;0.562564!10562-108A4;0.0551294!10024-101D6;0.473425!10064-101I1;0.561703!10609-108F6;0.59739!10048-101G3;0.983121!10781-110G7;0.5831!10181-103D1;0.727176!10159-103A6;0.505708!10056-101H2;0.499944!10737-110B8;0.97575!10025-101D7;0.405546!10044-101F8;0.824027!10424-106D1;0.78966!10463-106H4;0.5449!10616-108G4;0.790247!10486-107A9;0.545499!10062-101H8;0.353689!10202-103F4;0.0871495!10158-103A5;0.197622!10441-106E9;0.468543!10031-101E4;0.020584!10063-101H9;0.528142!10063-101H9;0.644548!11763-123H8;0.0173542!11765-123I1;0.844242!11768-123I4;0.693809!10807-111A6;0.801077!10790-110H7;0.349676!10798-110I6;0.843206!10786-110H3;0.227328!10591-108D6;0.70409!10593-108D8;0.545724!10590-108D5;0.813!10026-101D8;0.542573!10096-102C6;0.134421!10168-103B6;0.0410049!10154-103A1;0.219995!10209-103G2;0.460392!10061-101H7;0.00634262!10027-101D9;0.0578074!10043-101F7;0.376682!10783-110G9;0.126876!10028-101E1;0.661619!10060-101H6;0.325736!10203-103F5;0.0554013!10059-101H5;0.170718!10047-101G2;0.118776!10029-101E2;0.291238!10058-101H4;0.375698!10418-106C4;0.0585442!10492-107B6;0.306971!10694-109G1;0.477542!10797-110I5;0.700467!10057-101H3;0.666641!10100-102D1;0.603676!10055-101H1;0.294832!10204-103F6;0.263548!10191-103E2;0.73098!10563-108A5;0.056747 | ||
|name=DMC1_Testis-DMC1-ChIP-Seq/Homer | |name=DMC1_Testis-DMC1-ChIP-Seq/Homer | ||
|tomtom_result=Pax4#MA0068.1;8;0.0040164;1.91181;1;20;ACTCTAATTCGTGCTACTTC;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!RTG3#MA0376.1;0;0.00940562;4.47708;1;20;ACTCTAATTCGTGCTACTTC;GACTAAGCACGTGCTAATAT;-!SMP1#MA0383.1;4;0.0143615;6.83609;1;17;ACTCTAATTCGTGCTACTTC;TGCTAATTTAATTATAGGTAA;-!NKX3-1#MA0124.1;-13;0.0165397;7.87289;1;7;ACTCTAATTCGTGCTACTTC;ATACTTA;+ | |||
}} | }} |
Latest revision as of 15:02, 7 September 2012
Full Name: DMC1_Testis-DMC1-ChIP-Seq/Homer
Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
---|---|---|---|---|---|---|---|---|
Pax4#MA0068.1 | 8 | 0.0040164 | 1.91181 | 1 | 20 | ACTCTAATTCGTGCTACTTC | GGGGGGGGAGTGGAGTATTGGAAATTTTTC | - |
RTG3#MA0376.1 | 0 | 0.00940562 | 4.47708 | 1 | 20 | ACTCTAATTCGTGCTACTTC | GACTAAGCACGTGCTAATAT | - |
SMP1#MA0383.1 | 4 | 0.0143615 | 6.83609 | 1 | 17 | ACTCTAATTCGTGCTACTTC | TGCTAATTTAATTATAGGTAA | - |
NKX3-1#MA0124.1 | -13 | 0.0165397 | 7.87289 | 1 | 7 | ACTCTAATTCGTGCTACTTC | ATACTTA | + |