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MacroAPE 1083:DMC1 Testis-DMC1-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;674;152;320;252!2;359;748;123;168!3;150;358;1;889!4;50;737;77;534!5;315;218;333;532!6;463;401;275;259!7;945;112;226;115!8;52;204;439;703!9;7...")
 
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10597-108E3;0.00742123!10717-109I6;0.871475!10455-106G5;0.141753!10534-107G3;0.904045!10429-106D6;0.409725!10464-106H5;0.921116!10827-111C8;0.245272!10789-110H6;0.832209!10828-111C9;0.633956!10788-110H5;0.770474!10792-110H9;0.90518!10765-110E9;0.527065!10829-111D1;0.901394!10830-111D2;0.213969!10831-111D3;0.877696!10832-111D4;0.915899!10833-111D5;0.365164!10764-110E8;0.657914!10770-110F5;0.475632!10399-106A3;0.195382!10400-106A4;0.827248!10405-106A9;0.927389!10834-111D6;0.752229!10835-111D7;0.275411!10836-111D8;0.509436!10837-111D9;0.541647!10699-109G6;0.765046!10802-111A1;0.450191!10796-110I4;0.849022!10010-101C1;0.88031!10810-111A9;0.662373!10421-106C7;0.213909!10708-109H6;0.748934!12235-129G3;0.0255564!12236-129G4;0.0401409!12237-129G5;6.24722e-06!10167-103B5;0.00438506!10151-102I7;0.319973!10428-106D5;0.559241!10795-110I3;0.135444!10805-111A4;0.702931!10052-101G7;0.235904!10189-103D9;0.229798!10589-108D4;0.402587!10425-106D2;0.48025!10427-106D4;0.639242!10702-109G9;0.314876!10432-106D9;0.539302!10496-107C1;0.804412!10718-109I7;0.935089!10011-101C2;0.785346!10053-101G8;0.40911!10686-109F2;0.0678603!10084-102B3;0.420709!10012-101C3;0.625058!10085-102B4;0.326247!10482-107A5;0.421892!10419-106C5;0.877408!10080-102A8;0.525209!10760-110E4;0.377003!10709-109H7;0.904755!10710-109H8;0.277017!10703-109H1;0.401748!10719-109I8;0.262001!10642-109A3;0.109389!10177-103C6;0.0846604!10164-103B2;0.273341!10173-103C2;0.471544!10166-103B4;0.543056!10083-102B2;0.757497!10188-103D8;0.664981!10552-107I3;0.414916!10553-107I4;0.0499546!10013-101C4;0.341361!10536-107G5;0.0814427!10618-108G6;0.383686!10423-106C9;0.257793!10785-110H2;0.116602!12238-129G6;0.538972!12239-129G7;0.0589238!12240-129G8;0.890032!10416-106C2;0.0512367!10801-110I9;0.569618!10766-110F1;0.97271!10824-111C5;0.762013!10825-111C6;0.149128!10826-111C7;0.269386!10454-106G4;0.306612!10409-106B4;0.209915!10638-108I8;0.726133!10636-108I6;0.389072!10513-107D9;0.837168!10420-106C6;0.93228!10082-102B1;0.568519!10014-101C5;0.812342!10070-101I7;0.837722!10452-106G2;0.254337!10453-106G3;0.487638!10449-106F8;0.96422!10042-101F6;0.700241!10069-101I6;0.441279!10193-103E4;0.0419001!10631-108I1;0.281261!10438-106E6;0.518781!10488-107B2;0.721387!10196-103E7;0.0765761!10071-101I8;0.338398!10071-101I8;0.0148489!10041-101F5;0.516977!10451-106G1;0.34468!10450-106F9;0.0878015!10604-108F1;0.0356473!10605-108F2;0.338043!10606-108F3;0.131708!10603-108E9;0.332006!10497-107C2;0.179673!10448-106F7;0.3252!10643-109A4;0.249768!10426-106D3;0.0556526!10431-106D8;0.629544!10197-103E8;0.966215!10443-106F2;0.0220298!10815-111B5;0.0625802!10816-111B6;0.148117!10817-111B7;0.283015!10015-101C6;0.0817857!10410-106B5;0.14573!10054-101G9;0.731437!10758-110E2;0.596361!10711-109H9;0.00507028!10040-101F4;0.150445!10470-106I2;0.517399!10415-106C1;0.287458!10198-103E9;0.221527!10614-108G2;0.299254!10612-108F9;0.909163!10549-107H9;0.814741!10615-108G3;0.0837536!10487-107B1;0.519169!10433-106E1;0.414975!10688-109F4;0.22191!10444-106F3;0.888225!10444-106F3;0.395899!10485-107A8;0.364781!10413-106B8;0.264654!10175-103C4;0.625676!10161-103A8;0.317703!12131-128D7;0.56773!10624-108H3;0.200664!10712-109I1;0.726805!10205-103F7;0.48409!10206-103F8;0.00194131!10207-103F9;0.0956956!10050-101G5;0.239047!10051-101G6;0.944462!10016-101C7;0.387086!10046-101G1;0.233337!10778-110G4;0.0767801!10633-108I3;0.48941!10818-111B8;0.161254!10819-111B9;0.0682149!10820-111C1;0.0541965!10484-107A7;0.0249749!10808-111A7;0.0304194!10169-103B7;0.256202!10153-102I9;0.380611!13425-144D5;0.476164!13433-144E4;0.740326!13437-144E8;0.796405!11904-125F5;0.752672!11905-125F6;0.0532336!10039-101F3;0.0960326!10791-110H8;0.429539!10017-101C8;0.879926!10045-101F9;0.839494!10509-107D5;0.697836!10839-111E2;0.452996!10692-109F8;0.405572!10079-102A7;0.0918323!10078-102A6;0.088421!10721-110A1;0.488939!10569-108B2;0.509425!10570-108B3;0.694253!10571-108B4;0.374621!10647-109A8;0.904151!10752-110D5;0.300303!10782-110G8;0.710651!10726-110A6;0.411587!10018-101C9;0.127004!10086-102B5;0.983693!10182-103D2;0.962875!10165-103B3;0.337026!10499-107C4;0.309827!10408-106B3;0.221709!10019-101D1;0.441456!10068-101I5;0.0726153!10075-102A3;0.0565523!10077-102A5;0.0579117!10727-110A7;0.956507!10775-110G1;0.550315!10412-106B7;0.513678!12231-129F8;0.675137!12232-129F9;0.285441!12233-129G1;0.277985!12234-129G2;0.417225!10414-106B9;0.368764!10170-103B8;0.261664!10183-103D3;0.502297!10150-102I6;0.339442!10174-103C3;0.363342!10155-103A2;0.306591!10038-101F2;0.404415!10838-111E1;0.508552!10759-110E3;0.00380473!10514-107E1;0.400841!10465-106H6;0.728553!10691-109F7;0.869958!10843-111E6;0.0285258!10844-111E7;0.659734!11747-123G1;0.571336!11748-123G2;0.292464!11749-123G3;0.320046!11750-123G4;0.433971!11751-123G5;0.48464!11840-124H4;0.988878!11752-123G6;0.750965!11753-123G7;0.472793!11754-123G8;0.951169!11755-123G9;0.986929!11756-123H1;0.330814!11833-124G6;0.139182!11760-123H5;0.165968!11836-124G9;0.194179!11758-123H3;0.963766!11835-124G8;0.382416!11762-123H7;0.138734!11838-124H2;0.532905!11757-123H2;0.683307!11759-123H4;0.391857!11761-123H6;0.359052!11842-124H6;0.548681!11837-124H1;0.296057!10568-108B1;0.348009!13230-141I8;0.07431!13231-141I9;0.65994!10696-109G3;0.767567!10493-107B7;0.754366!10494-107B8;0.0560725!10850-111F4;0.340531!10851-111F5;0.00389978!10852-111F6;0.162122!10853-111F7;0.235744!10854-111F8;0.234764!10855-111F9;0.288371!10856-111G1;0.810045!10847-111F1;0.0586037!10846-111E9;0.00533587!10848-111F2;0.152168!10845-111E8;0.0407477!10857-111G2;0.939319!10858-111G3;0.0226625!10156-103A3;0.00591502!11901-125F2;0.408693!11902-125F3;0.0828292!11903-125F4;0.166443!10689-109F5;0.217304!10648-109A9;0.0202241!10784-110H1;0.00521566!10744-110C6;0.838704!10772-110F7;0.121462!10474-106I6;0.238874!10600-108E6;0.734941!10684-109E9;0.114052!12226-129F3;0.66412!12227-129F4;0.440996!10508-107D4;0.0718625!10539-107G8;0.884395!10607-108F4;0.870051!10555-107I6;0.173492!10774-110F9;0.874737!10637-108I7;0.277763!10663-109C6;0.267896!10728-110A8;0.475286!10729-110A9;0.211228!10430-106D7;0.445246!10730-110B1;0.689146!10813-111B3;0.417266!10812-111B2;0.744717!10037-101F1;0.404039!10172-103C1;0.574357!10163-103B1;0.256921!10076-102A4;0.527399!10073-102A1;0.410391!10036-101E9;0.370544!10195-103E6;0.66314!10277-104E7;0.436284!10434-106E2;0.544858!10550-107I1;0.871861!10545-107H5;0.469278!10544-107H4;0.917627!10704-109H2;0.34267!10510-107D6;0.493955!10558-107I9;0.0123918!10020-101D2;0.179267!10732-110B3;0.13023!10049-101G4;0.0248496!10698-109G5;0.105798!10437-106E5;0.381562!10417-106C3;0.363386!10035-101E8;0.664613!10171-103B9;0.468927!10157-103A4;0.360365!10034-101E7;0.385329!10072-101I9;0.459964!10199-103F1;0.451311!10200-103F2;0.696736!10697-109G4;0.279923!10723-110A3;0.803007!10179-103C8;0.999389!10160-103A7;0.873802!10180-103C9;0.963133!10162-103A9;0.164526!10021-101D3;0.194673!10840-111E3;0.230153!10706-109H4;0.671169!10033-101E6;0.264337!10032-101E5;0.598541!10490-107B4;0.534013!10439-106E7;0.935699!10022-101D4;0.149455!10176-103C5;0.45845!10469-106I1;0.357143!10067-101I4;0.609908!10411-106B6;0.380262!10471-106I3;0.18264!10030-101E3;0.608795!10475-106I7;0.33672!10787-110H4;0.0505357!10477-106I9;0.217605!10695-109G2;0.104168!11771-123I7;0.669531!11772-123I8;0.318844!11773-123I9;0.842198!10093-102C3;0.805148!10442-106F1;0.945811!10442-106F1;0.0309685!10201-103F3;0.0789257!10639-108I9;0.112617!11843-124H7;0.175572!11841-124H5;0.732619!10693-109F9;0.653306!10436-106E4;0.23273!10483-107A6;0.307136!10282-104F3;0.440182!10023-101D5;0.244103!10066-101I3;0.620937!10065-101I2;0.23959!10800-110I8;0.843233!10610-108F7;0.0576348!10841-111E4;0.186673!10541-107H1;0.578509!10842-111E5;0.562564!10562-108A4;0.0551294!10024-101D6;0.473425!10064-101I1;0.561703!10609-108F6;0.59739!10048-101G3;0.983121!10781-110G7;0.5831!10181-103D1;0.727176!10159-103A6;0.505708!10056-101H2;0.499944!10737-110B8;0.97575!10025-101D7;0.405546!10044-101F8;0.824027!10424-106D1;0.78966!10463-106H4;0.5449!10616-108G4;0.790247!10486-107A9;0.545499!10062-101H8;0.353689!10202-103F4;0.0871495!10158-103A5;0.197622!10441-106E9;0.468543!10031-101E4;0.020584!10063-101H9;0.528142!10063-101H9;0.644548!11763-123H8;0.0173542!11765-123I1;0.844242!11768-123I4;0.693809!10807-111A6;0.801077!10790-110H7;0.349676!10798-110I6;0.843206!10786-110H3;0.227328!10591-108D6;0.70409!10593-108D8;0.545724!10590-108D5;0.813!10026-101D8;0.542573!10096-102C6;0.134421!10168-103B6;0.0410049!10154-103A1;0.219995!10209-103G2;0.460392!10061-101H7;0.00634262!10027-101D9;0.0578074!10043-101F7;0.376682!10783-110G9;0.126876!10028-101E1;0.661619!10060-101H6;0.325736!10203-103F5;0.0554013!10059-101H5;0.170718!10047-101G2;0.118776!10029-101E2;0.291238!10058-101H4;0.375698!10418-106C4;0.0585442!10492-107B6;0.306971!10694-109G1;0.477542!10797-110I5;0.700467!10057-101H3;0.666641!10100-102D1;0.603676!10055-101H1;0.294832!10204-103F6;0.263548!10191-103E2;0.73098!10563-108A5;0.056747
|name=DMC1_Testis-DMC1-ChIP-Seq/Homer
|name=DMC1_Testis-DMC1-ChIP-Seq/Homer
|tomtom_result=Pax4#MA0068.1;8;0.0040164;1.91181;1;20;ACTCTAATTCGTGCTACTTC;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!RTG3#MA0376.1;0;0.00940562;4.47708;1;20;ACTCTAATTCGTGCTACTTC;GACTAAGCACGTGCTAATAT;-!SMP1#MA0383.1;4;0.0143615;6.83609;1;17;ACTCTAATTCGTGCTACTTC;TGCTAATTTAATTATAGGTAA;-!NKX3-1#MA0124.1;-13;0.0165397;7.87289;1;7;ACTCTAATTCGTGCTACTTC;ATACTTA;+
}}
}}

Latest revision as of 15:02, 7 September 2012

Full Name: DMC1_Testis-DMC1-ChIP-Seq/Homer

Motif matrix
POACGT
1674152320252
2359748123168
31503581889
45073777534
5315218333532
6463401275259
7945112226115
852204439703
971481369
10138571527
11278238612270
12446180871
131113951
14296380366356
154274251257
167823652060
17111348336
184510511247
194299421215
2035059684368

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

Pax4#MA0068.180.00401641.91181120ACTCTAATTCGTGCTACTTCGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
RTG3#MA0376.100.009405624.47708120ACTCTAATTCGTGCTACTTCGACTAAGCACGTGCTAATAT-
SMP1#MA0383.140.01436156.83609117ACTCTAATTCGTGCTACTTCTGCTAATTTAATTATAGGTAA-
NKX3-1#MA0124.1-130.01653977.8728917ACTCTAATTCGTGCTACTTCATACTTA+