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MacroAPE 1083:ATYACCC,motif728: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;3046.624;181.888;16.24;3.248!2;3.248;3.248;45.472;3196.032!3;3.248;1380.4;3.248;1861.104!4;3238.256;3.248;3.248;3.248!5;3.248;3238.256;3.248...")
 
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0.960547!10851-111F5;0.608256!10852-111F6;0.699301!10853-111F7;0.616291!10854-111F8;0.528233!10855-111F9;0.864128!10856-111G1;0.405528!10847-111F1;0.81812!10846-111E9;0.930674!10848-111F2;0.521194!10845-111E8;0.277313!10857-111G2;0.55826!10858-111G3;0.139803!10156-103A3;0.692914!11901-125F2;0.725116!11902-125F3;0.0692999!11903-125F4;0.0867236!10689-109F5;0.0670142!10648-109A9;0.583612!10784-110H1;0.249858!10744-110C6;0.305099!10772-110F7;0.947301!10474-106I6;0.865166!10600-108E6;0.0536893!10684-109E9;0.270369!12226-129F3;0.863144!12227-129F4;0.321612!10508-107D4;0.35306!10539-107G8;0.601084!10607-108F4;0.866483!10555-107I6;0.373565!10774-110F9;0.723385!10637-108I7;0.704401!10663-109C6;0.50835!10728-110A8;0.743625!10729-110A9;0.396919!10430-106D7;0.495554!10730-110B1;0.915467!10813-111B3;0.885858!10812-111B2;0.731724!10037-101F1;0.638876!10172-103C1;0.707215!10163-103B1;0.801605!10076-102A4;0.685574!10073-102A1;0.448795!10036-101E9;0.550074!10195-103E6;0.611605!10277-104E7;0.615994!10434-106E2;0.617901!10550-107I1;0.64337!10545-107H5;0.809728!10544-107H4;0.823578!10704-109H2;0.448574!10510-107D6;0.307876!10558-107I9;0.300117!10020-101D2;0.100591!10732-110B3;0.544994!10049-101G4;0.223768!10698-109G5;0.423166!10437-106E5;0.833103!10417-106C3;0.360283!10035-101E8;0.833179!10171-103B9;0.645143!10157-103A4;0.9013!10034-101E7;0.721315!10072-101I9;0.701036!10199-103F1;0.469805!10200-103F2;0.735666!10697-109G4;0.856534!10723-110A3;0.843753!10179-103C8;0.800859!10160-103A7;0.967081!10180-103C9;0.960718!10162-103A9;0.879615!10021-101D3;0.832203!10840-111E3;0.300459!10706-109H4;0.218735!10033-101E6;0.640638!10032-101E5;0.832538!10490-107B4;0.668557!10439-106E7;0.37393!10022-101D4;0.334506!10176-103C5;0.27659!10469-106I1;0.964631!10067-101I4;0.848835!10411-106B6;0.338376!10471-106I3;0.974556!10030-101E3;0.138886!10475-106I7;0.608951!10787-110H4;0.915041!10477-106I9;0.866781!10695-109G2;0.790242!11771-123I7;0.36982!11772-123I8;0.615417!11773-123I9;0.541983!10093-102C3;0.994213!10442-106F1;0.961598!10442-106F1;0.302943!10201-103F3;0.262413!10639-108I9;0.705635!11843-124H7;0.57068!11841-124H5;0.12935!10693-109F9;0.737022!10436-106E4;0.460409!10483-107A6;0.878397!10282-104F3;0.389235!10023-101D5;0.216426!10066-101I3;0.741113!10065-101I2;0.601139!10800-110I8;0.463932!10610-108F7;0.786223!10841-111E4;0.82069!10541-107H1;0.164403!10842-111E5;0.871!10562-108A4;0.258085!10024-101D6;0.739332!10064-101I1;0.688045!10609-108F6;0.239818!10048-101G3;0.81989!10781-110G7;0.565703!10181-103D1;0.73702!10159-103A6;0.746627!10056-101H2;0.954293!10737-110B8;0.467765!10025-101D7;0.345737!10044-101F8;0.47942!10424-106D1;0.258129!10463-106H4;0.356697!10616-108G4;0.59445!10486-107A9;0.340784!10062-101H8;0.145257!10202-103F4;0.237891!10158-103A5;0.659133!10441-106E9;0.821816!10031-101E4;0.172171!10063-101H9;0.674648!10063-101H9;0.445305!11763-123H8;0.230679!11765-123I1;0.368635!11768-123I4;0.926754!10807-111A6;0.757614!10790-110H7;0.777393!10798-110I6;0.369836!10786-110H3;0.315676!10591-108D6;0.689124!10593-108D8;0.370156!10590-108D5;0.941524!10026-101D8;0.822829!10096-102C6;0.627065!10168-103B6;0.698223!10154-103A1;0.784992!10209-103G2;0.766726!10061-101H7;0.865187!10027-101D9;0.412271!10043-101F7;0.460741!10783-110G9;0.397663!10028-101E1;0.664619!10060-101H6;0.536647!10203-103F5;0.19353!10059-101H5;0.789651!10047-101G2;0.553379!10029-101E2;0.866634!10058-101H4;0.704666!10418-106C4;0.357425!10492-107B6;0.755413!10694-109G1;0.25384!10797-110I5;0.157612!10057-101H3;0.273848!10100-102D1;0.432702!10055-101H1;0.588762!10204-103F6;0.251894!10191-103E2;0.348459!10563-108A5;0.492951
|name=ATYACCC,motif728,CNhs12546,T:3248.0(60.25%),B:39802.9(52.64%),P:1e-28
|name=ATYACCC,motif728,CNhs12546,T:3248.0(60.25%),B:39802.9(52.64%),P:1e-28
|tomtom_result=REB1#MA0363.1;0;0.000817343;0.389055;0.77811;7;ATTACCC;GTTACCCGG;+!YDR026C#MA0421.1;0;0.0051603;2.4563;1;7;ATTACCC;TTTACCCGGC;+!ttk#MA0460.1;0;0.0115075;5.47758;1;7;ATTACCC;ATTATCCTT;-!Gfi#MA0038.1;3;0.0119756;5.70039;1;7;ATTACCC;CAAATCACTG;+!Ubx#MA0094.1;0;0.0124124;5.90829;1;4;ATTACCC;ATTA;-!HMRA2#MA0318.1;0;0.0138443;6.5899;1;7;ATTACCC;ATTACATG;-!NFKB1#MA0105.1;4;0.0139157;6.62388;1;7;ATTACCC;GGGGATTCCCC;+!YPR196W#MA0437.1;0;0.014253;6.78443;1;7;ATTACCC;ATTTCTCCG;+
}}
}}

Latest revision as of 12:07, 7 September 2012

Full Name: ATYACCC,motif728,CNhs12546,T:3248.0(60.25%),B:39802.9(52.64%),P:1e-28

Motif matrix
POACGT
13046.624181.88816.243.248
23.2483.24845.4723196.032
33.2481380.43.2481861.104
43238.2563.2483.2483.248
53.2483238.2563.2483.248
6532.6721978.03255.216682.08
73.2482718.576522.9283.248

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
REB1#MA0363.100.0008173430.3890550.778117ATTACCCGTTACCCGG+
YDR026C#MA0421.100.00516032.456317ATTACCCTTTACCCGGC+
ttk#MA0460.100.01150755.4775817ATTACCCATTATCCTT-
Gfi#MA0038.130.01197565.7003917ATTACCCCAAATCACTG+
Ubx#MA0094.100.01241245.9082914ATTACCCATTA-
HMRA2#MA0318.100.01384436.589917ATTACCCATTACATG-
NFKB1#MA0105.140.01391576.6238817ATTACCCGGGGATTCCCC+
YPR196W#MA0437.100.0142536.7844317ATTACCCATTTCTCCG+
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