MacroAPE 1083:2-CGBTDATTA: Difference between revisions
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(Created page with "{{Macroape_1083
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4036!10464-106H5;0.643558!10827-111C8;0.754636!10789-110H6;0.849313!10828-111C9;0.826417!10788-110H5;0.984497!10792-110H9;0.80382!10765-110E9;0.153511!10829-111D1;0.835103!10830-111D2;0.592091!10831-111D3;0.223998!10832-111D4;0.969244!10833-111D5;0.885116!10764-110E8;0.78749!10770-110F5;0.884292!10399-106A3;0.833578!10400-106A4;0.53264!10405-106A9;0.546364!10834-111D6;0.451412!10835-111D7;0.534875!10836-111D8;0.773165!10837-111D9;0.961571!10699-109G6;0.700363!10802-111A1;0.740148!10796-110I4;0.805401!10010-101C1;0.773112!10810-111A9;0.786983!10421-106C7;0.573117!10708-109H6;0.818381!12235-129G3;0.294172!12236-129G4;0.12703!12237-129G5;0.0938407!10167-103B5;0.0176258!10151-102I7;0.856807!10428-106D5;0.972998!10795-110I3;0.646066!10805-111A4;0.678274!10052-101G7;0.223071!10189-103D9;0.54222!10589-108D4;0.149681!10425-106D2;0.648384!10427-106D4;0.223588!10702-109G9;0.73535!10432-106D9;0.103411!10496-107C1;0.15632!10718-109I7;0.0632453!10011-101C2;0.730138!10053-101G8;0.561117!10686-109F2;0.00197316!10084-102B3;0.572261!10012-101C3;0.998384!10085-102B4;0.574841!10482-107A5;0.391136!10419-106C5;0.333688!10080-102A8;0.389697!10760-110E4;0.0187153!10709-109H7;0.734967!10710-109H8;0.91209!10703-109H1;0.041718!10719-109I8;0.599877!10642-109A3;0.632592!10177-103C6;0.756834!10164-103B2;0.50753!10173-103C2;0.801259!10166-103B4;0.73926!10083-102B2;0.797764!10188-103D8;0.686481!10552-107I3;0.746655!10553-107I4;0.927333!10013-101C4;0.188251!10536-107G5;0.277513!10618-108G6;0.419779!10423-106C9;0.425217!10785-110H2;0.365433!12238-129G6;0.361086!12239-129G7;0.216596!12240-129G8;0.805328!10416-106C2;0.64058!10801-110I9;0.723981!10766-110F1;0.569864!10824-111C5;0.821772!10825-111C6;0.856931!10826-111C7;0.836487!10454-106G4;0.880114!10409-106B4;0.981093!10638-108I8;0.939813!10636-108I6;0.762009!10513-107D9;0.456716!10420-106C6;0.0663082!10082-102B1;0.644931!10014-101C5;0.298656!10070-101I7;0.437697!10452-106G2;0.1106!10453-106G3;0.0826674!10449-106F8;0.190924!10042-101F6;0.148335!10069-101I6;0.980511!10193-103E4;0.916418!10631-108I1;0.456877!10438-106E6;0.989743!10488-107B2;0.915416!10196-103E7;0.275968!10071-101I8;0.248003!10071-101I8;0.497233!10041-101F5;0.438276!10451-106G1;0.797788!10450-106F9;0.133927!10604-108F1;0.119979!10605-108F2;0.750273!10606-108F3;0.734462!10603-108E9;0.731928!10497-107C2;0.727294!10448-106F7;0.235617!10643-109A4;0.977264!10426-106D3;0.00478244!10431-106D8;0.778668!10197-103E8;0.1872!10443-106F2;0.751452!10815-111B5;0.345241!10816-111B6;0.526294!10817-111B7;0.440728!10015-101C6;0.563946!10410-106B5;0.863683!10054-101G9;0.911744!10758-110E2;0.878008!10711-109H9;0.0621029!10040-101F4;0.233176!10470-106I2;0.532101!10415-106C1;0.114375!10198-103E9;0.147475!10614-108G2;0.734199!10612-108F9;0.13005!10549-107H9;0.617896!10615-108G3;0.739455!10487-107B1;0.75902!10433-106E1;0.465574!10688-109F4;0.996443!10444-106F3;0.541316!10444-106F3;0.727971!10485-107A8;0.643173!10413-106B8;0.638956!10175-103C4;0.122148!10161-103A8;0.966776!12131-128D7;0.95117!10624-108H3;0.655783!10712-109I1;0.0452439!10205-103F7;0.678821!10206-103F8;0.638688!10207-103F9;0.825531!10050-101G5;0.385245!10051-101G6;0.176518!10016-101C7;0.917121!10046-101G1;0.777448!10778-110G4;0.707265!10633-108I3;0.270122!10818-111B8;0.106803!10819-111B9;0.371788!10820-111C1;0.346091!10484-107A7;0.414735!10808-111A7;0.863143!10169-103B7;0.43343!10153-102I9;0.741289!13425-144D5;0.926964!13433-144E4;0.404501!13437-144E8;0.601543!11904-125F5;0.803199!11905-125F6;0.962082!10039-101F3;0.28779!10791-110H8;0.604655!10017-101C8;0.249827!10045-101F9;0.469265!10509-107D5;0.062608!10839-111E2;0.314543!10692-109F8;0.646149!10079-102A7;0.0848102!10078-102A6;0.896811!10721-110A1;0.879713!10569-108B2;0.489006!10570-108B3;0.192242!10571-108B4;0.174643!10647-109A8;0.0885505!10752-110D5;0.830993!10782-110G8;0.844086!10726-110A6;0.915295!10018-101C9;0.185685!10086-102B5;0.457534!10182-103D2;0.0728919!10165-103B3;0.753903!10499-107C4;0.871428!10408-106B3;0.671101!10019-101D1;0.775687!10068-101I5;0.466031!10075-102A3;0.347073!10077-102A5;0.237498!10727-110A7;0.6987!10775-110G1;0.525287!10412-106B7;0.879987!12231-129F8;0.917299!12232-129F9;0.021372!12233-129G1;0.0714619!12234-129G2;0.0227027!10414-106B9;0.117657!10170-103B8;0.778459!10183-103D3;0.705539!10150-102I6;0.743082!10174-103C3;0.8006!10155-103A2;0.683277!10038-101F2;0.624262!10838-111E1;0.959662!10759-110E3;0.366898!10514-107E1;0.645258!10465-106H6;0.32038!10691-109F7;0.172741!10843-111E6;0.0827159!10844-111E7;0.474929!11747-123G1;0.0468327!11748-123G2;0.127761!11749-123G3;0.246067!11750-123G4;0.188928!11751-123G5;0.778222!11840-124H4;0.388898!11752-123G6;0.147221!11753-123G7;0.0669898!11754-123G8;0.0329088!11755-123G9;0.0220596!11756-123H1;0.0024365!11833-124G6;0.0122738!11760-123H5;0.182701!11836-124G9;0.0287954!11758-123H3;0.0517799!11835-124G8;0.0340828!11762-123H7;0.18357!11838-124H2;0.218752!11757-123H2;0.135119!11759-123H4;0.00254059!11761-123H6;0.00877434!11842-124H6;0.128447!11837-124H1;0.0341161!10568-108B1;0.0549008!13230-141I8;0.00738409!13231-141I9;0.534952!10696-109G3;0.730109!10493-107B7;0.219895!10494-107B8;0.567415!10850-111F4;0.538529!10851-111F5;0.486401!10852-111F6;0.219346!10853-111F7;0.383372!10854-111F8;0.452953!10855-111F9;0.402848!10856-111G1;0.643399!10847-111F1;0.827487!10846-111E9;0.146302!10848-111F2;0.367742!10845-111E8;0.299344!10857-111G2;0.882929!10858-111G3;0.85572!10156-103A3;0.346226!11901-125F2;0.809124!11902-125F3;0.831417!11903-125F4;0.722325!10689-109F5;0.738365!10648-109A9;0.447043!10784-110H1;0.167268!10744-110C6;0.333471!10772-110F7;0.0113326!10474-106I6;0.972303!10600-108E6;0.306548!10684-109E9;0.478704!12226-129F3;0.74411!12227-129F4;0.935553!10508-107D4;0.895919!10539-107G8;0.379033!10607-108F4;0.144623!10555-107I6;0.0581378!10774-110F9;0.261449!10637-108I7;0.171285!10663-109C6;0.017941!10728-110A8;0.0206922!10729-110A9;0.00364533!10430-106D7;0.0632218!10730-110B1;0.795543!10813-111B3;0.312317!10812-111B2;0.812678!10037-101F1;0.504266!10172-103C1;0.541336!10163-103B1;0.923519!10076-102A4;0.994402!10073-102A1;0.423747!10036-101E9;0.558869!10195-103E6;0.644244!10277-104E7;0.556812!10434-106E2;0.827672!10550-107I1;0.363805!10545-107H5;0.469747!10544-107H4;0.798451!10704-109H2;0.209835!10510-107D6;0.105704!10558-107I9;0.592136!10020-101D2;0.577966!10732-110B3;0.565114!10049-101G4;0.512842!10698-109G5;0.716989!10437-106E5;0.666222!10417-106C3;0.343524!10035-101E8;0.641224!10171-103B9;0.565612!10157-103A4;0.582914!10034-101E7;0.884892!10072-101I9;0.566527!10199-103F1;0.493554!10200-103F2;0.847624!10697-109G4;0.386549!10723-110A3;0.128203!10179-103C8;0.612571!10160-103A7;0.762171!10180-103C9;0.907643!10162-103A9;0.755504!10021-101D3;0.432731!10840-111E3;0.422653!10706-109H4;0.594312!10033-101E6;0.0759507!10032-101E5;0.478035!10490-107B4;0.584717!10439-106E7;0.451525!10022-101D4;0.421676!10176-103C5;0.145114!10469-106I1;0.733629!10067-101I4;0.186911!10411-106B6;0.193587!10471-106I3;0.588452!10030-101E3;0.768168!10475-106I7;0.508325!10787-110H4;0.510703!10477-106I9;0.957325!10695-109G2;0.757872!11771-123I7;0.861956!11772-123I8;0.686633!11773-123I9;0.496185!10093-102C3;0.78333!10442-106F1;0.927591!10442-106F1;0.251689!10201-103F3;0.184467!10639-108I9;0.289119!11843-124H7;0.0748024!11841-124H5;0.678689!10693-109F9;0.113757!10436-106E4;0.692136!10483-107A6;0.840959!10282-104F3;0.558132!10023-101D5;0.73602!10066-101I3;0.800489!10065-101I2;0.882554!10800-110I8;0.767654!10610-108F7;0.21829!10841-111E4;0.308574!10541-107H1;0.171201!10842-111E5;0.409683!10562-108A4;0.130708!10024-101D6;0.360294!10064-101I1;0.935259!10609-108F6;0.850039!10048-101G3;0.415004!10781-110G7;0.246206!10181-103D1;0.548789!10159-103A6;0.623096!10056-101H2;0.658362!10737-110B8;0.542611!10025-101D7;0.298173!10044-101F8;0.760985!10424-106D1;0.0404847!10463-106H4;0.217966!10616-108G4;0.291037!10486-107A9;0.576879!10062-101H8;0.649529!10202-103F4;0.235868!10158-103A5;0.900367!10441-106E9;0.776361!10031-101E4;0.0622626!10063-101H9;0.733473!10063-101H9;0.456009!11763-123H8;0.56313!11765-123I1;0.392986!11768-123I4;0.87673!10807-111A6;0.143191!10790-110H7;0.579651!10798-110I6;0.17158!10786-110H3;0.21243!10591-108D6;0.530244!10593-108D8;0.0976219!10590-108D5;0.316751!10026-101D8;0.406234!10096-102C6;0.172805!10168-103B6;0.262649!10154-103A1;0.911089!10209-103G2;0.883886!10061-101H7;0.805213!10027-101D9;0.837055!10043-101F7;0.480485!10783-110G9;0.19182!10028-101E1;0.372629!10060-101H6;0.7403!10203-103F5;0.791395!10059-101H5;0.711174!10047-101G2;0.858661!10029-101E2;0.926951!10058-101H4;0.865159!10418-106C4;0.847283!10492-107B6;0.153673!10694-109G1;0.947431!10797-110I5;0.832239!10057-101H3;0.0799256!10100-102D1;0.44959!10055-101H1;0.631764!10204-103F6;0.381829!10191-103E2;0.0627836!10563-108A5;0.647513 | ||
|name=2-CGBTDATTA,CNhs11738,BestGuess:VSX1,2.p2.SwissRegulon.nucfreq(0.661894239176874),T:615.0(33.41%),B:10129.8(21.84%),P:1e-29 | |name=2-CGBTDATTA,CNhs11738,BestGuess:VSX1,2.p2.SwissRegulon.nucfreq(0.661894239176874),T:615.0(33.41%),B:10129.8(21.84%),P:1e-29 | ||
|tomtom_result=Pax4#MA0068.1;18;0.000181398;0.0863454;0.165589;9;CGGTAATTA;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!HNF1A#MA0046.1;-1;0.000516916;0.246052;0.220894;8;CGGTAATTA;GGTAATTATTAACC;-!YRR1#MA0439.1;1;0.00072595;0.345552;0.220894;9;CGGTAATTA;GCGGAGATAAG;-!ARO80#MA0273.1;9;0.00348775;1.66017;0.664536;9;CGGTAATTA;GATAATTCTCGGCAAGTATGT;+!YAP1#MA0415.1;0;0.00455374;2.16758;0.664536;9;CGGTAATTA;ATTTGCTTACGTAAGCTCGT;+!Nobox#MA0125.1;-1;0.00457005;2.17534;0.664536;8;CGGTAATTA;ACCAATTA;-!TBP#MA0108.2;3;0.00606691;2.88785;0.664536;9;CGGTAATTA;CCCCGCCTTTTATAC;-!TBP#MA0108.2;3;0.00606691;2.88785;0.664536;9;CGGTAATTA;CCCCGCCTTTTATAC;-!Ubx#MA0094.1;-5;0.00655182;3.11867;0.664536;4;CGGTAATTA;ATTA;-!YAP6#MA0418.1;-1;0.00740358;3.52411;0.675836;8;CGGTAATTA;GTCGCTTACGTAATCAGACC;-!STB5#MA0392.1;0;0.0113892;5.42125;0.677353;8;CGGTAATTA;CGGTGTTA;+!YDR520C#MA0422.1;1;0.0115869;5.51538;0.677353;9;CGGTAATTA;CCGGAGATAA;+!H2.0#MA0448.1;-2;0.0119144;5.67128;0.677353;7;CGGTAATTA;TTAATTA;+!Dll#MA0187.1;-2;0.0128406;6.11214;0.677353;7;CGGTAATTA;GTAATTA;-!HOXA5#MA0158.1;0;0.0129826;6.17973;0.677353;8;CGGTAATTA;CACTAATT;+!SMP1#MA0383.1;0;0.0145185;6.91083;0.677353;9;CGGTAATTA;TGCTAATTTAATTATAGGTAA;-!NHP6B#MA0346.1;-1;0.0166263;7.91413;0.677353;8;CGGTAATTA;TCATATTATATATAAATAAA;-!STP2#MA0395.1;11;0.0166263;7.91413;0.677353;9;CGGTAATTA;TCGTCGTGCGGCGCCGATCA;-!YPR196W#MA0437.1;0;0.0188799;8.98685;0.677353;9;CGGTAATTA;CGGAGAAAT;- | |||
}} | }} | ||
Latest revision as of 12:08, 7 September 2012
Full Name: 2-CGBTDATTA,CNhs11738,BestGuess:VSX1,2.p2.SwissRegulon.nucfreq(0.661894239176874),T:615.0(33.41%),B:10129.8(21.84%),P:1e-29
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
|---|---|---|---|---|---|---|---|---|
| Pax4#MA0068.1 | 18 | 0.000181398 | 0.0863454 | 0.165589 | 9 | CGGTAATTA | GGGGGGGGAGTGGAGTATTGGAAATTTTTC | - |
| HNF1A#MA0046.1 | -1 | 0.000516916 | 0.246052 | 0.220894 | 8 | CGGTAATTA | GGTAATTATTAACC | - |
| YRR1#MA0439.1 | 1 | 0.00072595 | 0.345552 | 0.220894 | 9 | CGGTAATTA | GCGGAGATAAG | - |
| ARO80#MA0273.1 | 9 | 0.00348775 | 1.66017 | 0.664536 | 9 | CGGTAATTA | GATAATTCTCGGCAAGTATGT | + |
| YAP1#MA0415.1 | 0 | 0.00455374 | 2.16758 | 0.664536 | 9 | CGGTAATTA | ATTTGCTTACGTAAGCTCGT | + |
| Nobox#MA0125.1 | -1 | 0.00457005 | 2.17534 | 0.664536 | 8 | CGGTAATTA | ACCAATTA | - |
| TBP#MA0108.2 | 3 | 0.00606691 | 2.88785 | 0.664536 | 9 | CGGTAATTA | CCCCGCCTTTTATAC | - |
| TBP#MA0108.2 | 3 | 0.00606691 | 2.88785 | 0.664536 | 9 | CGGTAATTA | CCCCGCCTTTTATAC | - |
| Ubx#MA0094.1 | -5 | 0.00655182 | 3.11867 | 0.664536 | 4 | CGGTAATTA | ATTA | - |
| YAP6#MA0418.1 | -1 | 0.00740358 | 3.52411 | 0.675836 | 8 | CGGTAATTA | GTCGCTTACGTAATCAGACC | - |
| STB5#MA0392.1 | 0 | 0.0113892 | 5.42125 | 0.677353 | 8 | CGGTAATTA | CGGTGTTA | + |
| YDR520C#MA0422.1 | 1 | 0.0115869 | 5.51538 | 0.677353 | 9 | CGGTAATTA | CCGGAGATAA | + |
| H2.0#MA0448.1 | -2 | 0.0119144 | 5.67128 | 0.677353 | 7 | CGGTAATTA | TTAATTA | + |
| Dll#MA0187.1 | -2 | 0.0128406 | 6.11214 | 0.677353 | 7 | CGGTAATTA | GTAATTA | - |
| HOXA5#MA0158.1 | 0 | 0.0129826 | 6.17973 | 0.677353 | 8 | CGGTAATTA | CACTAATT | + |
| SMP1#MA0383.1 | 0 | 0.0145185 | 6.91083 | 0.677353 | 9 | CGGTAATTA | TGCTAATTTAATTATAGGTAA | - |
| NHP6B#MA0346.1 | -1 | 0.0166263 | 7.91413 | 0.677353 | 8 | CGGTAATTA | TCATATTATATATAAATAAA | - |
| STP2#MA0395.1 | 11 | 0.0166263 | 7.91413 | 0.677353 | 9 | CGGTAATTA | TCGTCGTGCGGCGCCGATCA | - |
| YPR196W#MA0437.1 | 0 | 0.0188799 | 8.98685 | 0.677353 | 9 | CGGTAATTA | CGGAGAAAT | - |
