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MacroAPE 1083:EBNA1 Raji-EBNA1-ChIP-Seq(GSE30709)/Homer: Difference between revisions

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61!10827-111C8;0.494194!10789-110H6;0.0238123!10828-111C9;0.0936196!10788-110H5;0.0826922!10792-110H9;0.486155!10765-110E9;0.0354122!10829-111D1;0.00316804!10830-111D2;0.372149!10831-111D3;0.0546044!10832-111D4;0.461656!10833-111D5;0.0254575!10764-110E8;0.000565377!10770-110F5;0.00721631!10399-106A3;0.0723244!10400-106A4;8.43655e-06!10405-106A9;5.93699e-06!10834-111D6;2.19985e-05!10835-111D7;0.0378976!10836-111D8;0.689967!10837-111D9;0.74717!10699-109G6;0.526791!10802-111A1;0.909103!10796-110I4;0.847155!10010-101C1;0.994711!10810-111A9;0.843228!10421-106C7;0.406073!10708-109H6;0.156047!12235-129G3;0.57454!12236-129G4;0.646214!12237-129G5;0.316074!10167-103B5;0.629447!10151-102I7;0.505743!10428-106D5;0.499965!10795-110I3;0.0624131!10805-111A4;0.000576608!10052-101G7;0.0454854!10189-103D9;0.571423!10589-108D4;0.947267!10425-106D2;0.0127152!10427-106D4;0.608905!10702-109G9;0.846624!10432-106D9;0.0977622!10496-107C1;0.837056!10718-109I7;0.832798!10011-101C2;0.000284726!10053-101G8;0.634761!10686-109F2;0.0701511!10084-102B3;0.396595!10012-101C3;0.192896!10085-102B4;0.234164!10482-107A5;0.403636!10419-106C5;0.532602!10080-102A8;0.504887!10760-110E4;0.857448!10709-109H7;0.672618!10710-109H8;0.468062!10703-109H1;0.960397!10719-109I8;0.157008!10642-109A3;0.941803!10177-103C6;0.0564374!10164-103B2;0.259419!10173-103C2;0.313819!10166-103B4;0.774381!10083-102B2;0.578838!10188-103D8;0.305595!10552-107I3;0.210244!10553-107I4;0.0500738!10013-101C4;0.554775!10536-107G5;0.997361!10618-108G6;0.21413!10423-106C9;0.391174!10785-110H2;0.604326!12238-129G6;0.0536654!12239-129G7;0.964265!12240-129G8;0.509942!10416-106C2;0.50893!10801-110I9;0.166197!10766-110F1;0.222649!10824-111C5;0.302724!10825-111C6;0.303312!10826-111C7;0.33853!10454-106G4;0.284041!10409-106B4;0.299639!10638-108I8;0.639628!10636-108I6;0.21825!10513-107D9;0.616426!10420-106C6;0.0272274!10082-102B1;0.482241!10014-101C5;0.470615!10070-101I7;0.954378!10452-106G2;0.976822!10453-106G3;0.571264!10449-106F8;0.73679!10042-101F6;0.730128!10069-101I6;0.351236!10193-103E4;0.999269!10631-108I1;0.150236!10438-106E6;0.852533!10488-107B2;0.18475!10196-103E7;0.0965542!10071-101I8;0.11105!10071-101I8;0.458909!10041-101F5;0.433499!10451-106G1;0.429594!10450-106F9;0.44044!10604-108F1;0.893271!10605-108F2;0.797778!10606-108F3;0.7073!10603-108E9;0.780643!10497-107C2;0.585868!10448-106F7;0.967937!10643-109A4;0.756308!10426-106D3;0.140648!10431-106D8;0.502328!10197-103E8;0.7265!10443-106F2;0.981481!10815-111B5;0.864728!10816-111B6;0.134596!10817-111B7;0.131636!10015-101C6;0.103564!10410-106B5;0.704836!10054-101G9;0.395839!10758-110E2;0.685266!10711-109H9;0.317393!10040-101F4;0.936578!10470-106I2;0.369073!10415-106C1;0.497299!10198-103E9;0.838938!10614-108G2;0.774552!10612-108F9;0.462106!10549-107H9;0.895934!10615-108G3;0.451036!10487-107B1;0.128849!10433-106E1;0.529211!10688-109F4;0.846808!10444-106F3;0.903915!10444-106F3;0.75084!10485-107A8;0.879013!10413-106B8;0.972358!10175-103C4;0.013056!10161-103A8;0.114029!12131-128D7;0.335778!10624-108H3;0.0883795!10712-109I1;0.629601!10205-103F7;0.968733!10206-103F8;0.64316!10207-103F9;0.714357!10050-101G5;0.751602!10051-101G6;0.4604!10016-101C7;0.4041!10046-101G1;0.73883!10778-110G4;0.696662!10633-108I3;0.194485!10818-111B8;0.0815324!10819-111B9;0.0629962!10820-111C1;0.0396299!10484-107A7;0.0919283!10808-111A7;0.802976!10169-103B7;0.491287!10153-102I9;0.519692!13425-144D5;0.396773!13433-144E4;0.12172!13437-144E8;0.096113!11904-125F5;0.0980331!11905-125F6;0.649188!10039-101F3;0.346191!10791-110H8;0.333026!10017-101C8;0.658825!10045-101F9;0.803747!10509-107D5;0.484305!10839-111E2;0.542732!10692-109F8;0.0799347!10079-102A7;0.834784!10078-102A6;0.593881!10721-110A1;0.345783!10569-108B2;0.148297!10570-108B3;0.694962!10571-108B4;0.566143!10647-109A8;0.796096!10752-110D5;0.887091!10782-110G8;0.47278!10726-110A6;0.974325!10018-101C9;0.179462!10086-102B5;0.80358!10182-103D2;0.939061!10165-103B3;0.109229!10499-107C4;0.316179!10408-106B3;0.953145!10019-101D1;0.810825!10068-101I5;0.88503!10075-102A3;0.790171!10077-102A5;0.749152!10727-110A7;0.254699!10775-110G1;0.328615!10412-106B7;0.368455!12231-129F8;0.601817!12232-129F9;0.500003!12233-129G1;0.370283!12234-129G2;0.31923!10414-106B9;0.418563!10170-103B8;0.467559!10183-103D3;0.261986!10150-102I6;0.189385!10174-103C3;0.323587!10155-103A2;0.399681!10038-101F2;0.638774!10838-111E1;0.402964!10759-110E3;0.338341!10514-107E1;0.204066!10465-106H6;0.924148!10691-109F7;0.151661!10843-111E6;0.104132!10844-111E7;0.345299!11747-123G1;0.247288!11748-123G2;0.778182!11749-123G3;0.725006!11750-123G4;0.921815!11751-123G5;0.622139!11840-124H4;0.886793!11752-123G6;0.687192!11753-123G7;0.441268!11754-123G8;0.660478!11755-123G9;0.556579!11756-123H1;0.601163!11833-124G6;0.395979!11760-123H5;0.852292!11836-124G9;0.864829!11758-123H3;0.42341!11835-124G8;0.135822!11762-123H7;0.580295!11838-124H2;0.924436!11757-123H2;0.451724!11759-123H4;0.623272!11761-123H6;0.43407!11842-124H6;0.775609!11837-124H1;0.636713!10568-108B1;0.841068!13230-141I8;0.925199!13231-141I9;0.954797!10696-109G3;0.83783!10493-107B7;0.630583!10494-107B8;0.285886!10850-111F4;0.416467!10851-111F5;0.534578!10852-111F6;0.371562!10853-111F7;0.121009!10854-111F8;0.812068!10855-111F9;0.837555!10856-111G1;0.905826!10847-111F1;0.501142!10846-111E9;0.856205!10848-111F2;0.39753!10845-111E8;0.359974!10857-111G2;0.382999!10858-111G3;0.110728!10156-103A3;0.728437!11901-125F2;0.407925!11902-125F3;0.261908!11903-125F4;0.388526!10689-109F5;0.401323!10648-109A9;0.851766!10784-110H1;0.0399216!10744-110C6;0.758192!10772-110F7;0.272991!10474-106I6;0.0258522!10600-108E6;0.268751!10684-109E9;0.552104!12226-129F3;0.822697!12227-129F4;0.317387!10508-107D4;0.451786!10539-107G8;0.434018!10607-108F4;0.440127!10555-107I6;0.994691!10774-110F9;0.158963!10637-108I7;0.410169!10663-109C6;0.901215!10728-110A8;0.876665!10729-110A9;0.753065!10430-106D7;0.406065!10730-110B1;0.741509!10813-111B3;0.360304!10812-111B2;0.710728!10037-101F1;0.673076!10172-103C1;0.275821!10163-103B1;0.23466!10076-102A4;0.581062!10073-102A1;0.191722!10036-101E9;0.430077!10195-103E6;0.159014!10277-104E7;0.282425!10434-106E2;0.183129!10550-107I1;0.995932!10545-107H5;0.511912!10544-107H4;0.895562!10704-109H2;0.554!10510-107D6;0.0938554!10558-107I9;0.963672!10020-101D2;0.103417!10732-110B3;0.30649!10049-101G4;0.713497!10698-109G5;0.181694!10437-106E5;0.490313!10417-106C3;0.763204!10035-101E8;0.541203!10171-103B9;0.313173!10157-103A4;0.341921!10034-101E7;0.458664!10072-101I9;0.281458!10199-103F1;0.351995!10200-103F2;0.69425!10697-109G4;0.597697!10723-110A3;0.858693!10179-103C8;0.0310241!10160-103A7;0.590626!10180-103C9;0.477386!10162-103A9;0.812229!10021-101D3;0.519714!10840-111E3;0.190608!10706-109H4;0.882247!10033-101E6;0.196443!10032-101E5;0.331437!10490-107B4;0.275888!10439-106E7;0.471541!10022-101D4;0.889107!10176-103C5;0.971348!10469-106I1;0.20312!10067-101I4;0.323688!10411-106B6;0.354744!10471-106I3;0.103898!10030-101E3;0.656356!10475-106I7;0.981779!10787-110H4;0.202613!10477-106I9;0.415308!10695-109G2;0.308442!11771-123I7;0.51191!11772-123I8;0.00194178!11773-123I9;0.00282351!10093-102C3;0.070309!10442-106F1;0.678613!10442-106F1;0.846737!10201-103F3;0.890294!10639-108I9;0.595254!11843-124H7;0.91519!11841-124H5;0.640566!10693-109F9;0.683915!10436-106E4;0.391155!10483-107A6;0.594061!10282-104F3;0.380722!10023-101D5;0.408748!10066-101I3;0.416162!10065-101I2;0.84477!10800-110I8;0.815693!10610-108F7;0.23181!10841-111E4;0.0418929!10541-107H1;0.245007!10842-111E5;0.937365!10562-108A4;0.474834!10024-101D6;0.0689575!10064-101I1;0.981623!10609-108F6;0.756728!10048-101G3;0.0477863!10781-110G7;0.340093!10181-103D1;0.486995!10159-103A6;0.130667!10056-101H2;0.523587!10737-110B8;0.139802!10025-101D7;0.269482!10044-101F8;0.0603705!10424-106D1;0.211089!10463-106H4;0.408098!10616-108G4;0.790493!10486-107A9;0.305808!10062-101H8;0.934731!10202-103F4;0.965629!10158-103A5;0.586573!10441-106E9;0.270062!10031-101E4;0.47908!10063-101H9;0.245327!10063-101H9;0.362647!11763-123H8;0.961643!11765-123I1;0.591803!11768-123I4;0.283253!10807-111A6;0.803448!10790-110H7;0.10984!10798-110I6;0.0741213!10786-110H3;0.193372!10591-108D6;0.0659409!10593-108D8;0.0161607!10590-108D5;0.182585!10026-101D8;0.0600191!10096-102C6;0.522981!10168-103B6;0.296409!10154-103A1;0.17868!10209-103G2;0.346021!10061-101H7;0.694853!10027-101D9;0.909233!10043-101F7;0.175529!10783-110G9;0.167897!10028-101E1;0.670633!10060-101H6;0.976723!10203-103F5;0.985399!10059-101H5;0.490618!10047-101G2;0.565218!10029-101E2;0.682639!10058-101H4;0.913092!10418-106C4;0.536291!10492-107B6;0.333646!10694-109G1;0.0811058!10797-110I5;0.920065!10057-101H3;0.932655!10100-102D1;0.774386!10055-101H1;0.68581!10204-103F6;0.921313!10191-103E2;0.852042!10563-108A5;0.926903
|name=EBNA1_Raji-EBNA1-ChIP-Seq(GSE30709)/Homer
|name=EBNA1_Raji-EBNA1-ChIP-Seq(GSE30709)/Homer
|tomtom_result=GCR2#MA0305.1;-10;0.00116874;0.556319;0.672494;7;GGCAGCATATGCTACCCAGG;GCTTCCT;+!RTG3#MA0376.1;2;0.00161379;0.768165;0.672494;18;GGCAGCATATGCTACCCAGG;GACTAAGCACGTGCTAATAT;-!MGA1#MA0336.1;0;0.00444613;2.11636;0.978389;20;GGCAGCATATGCTACCCAGG;TTTAGAGTGTTCTATAGTCCT;-!twi#MA0249.1;-2;0.00554359;2.63875;0.978389;12;GGCAGCATATGCTACCCAGG;TCGCATATGTTG;+!Pax4#MA0068.1;4;0.00762184;3.628;1;20;GGCAGCATATGCTACCCAGG;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!SPI1#MA0080.1;-11;0.0115851;5.5145;1;6;GGCAGCATATGCTACCCAGG;CTTCCG;-!Ar#MA0007.1;0;0.0124609;5.93138;1;20;GGCAGCATATGCTACCCAGG;ATAAGAACACCCTGTACCCGCC;+!ESR1#MA0112.2;2;0.0163369;7.77639;1;18;GGCAGCATATGCTACCCAGG;AGGTCAGGGTGACCTGGGCC;-!Myf#MA0055.1;-2;0.0187068;8.90444;1;12;GGCAGCATATGCTACCCAGG;CAGCAGCTGCTG;-
}}
}}

Latest revision as of 12:13, 7 September 2012

Full Name: EBNA1_Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Motif matrix
POACGT
1115841
213814471
31282292228
4584111
5615791
6436585133
74051026515
810616663252
922172140154
10227376416
111441153235
121572113
13111584
142241213149
1514451140
16158411
1710632619136
18168116136167
19144131198114
20146153157131

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GCR2#MA0305.1-100.001168740.5563190.6724947GGCAGCATATGCTACCCAGGGCTTCCT+
RTG3#MA0376.120.001613790.7681650.67249418GGCAGCATATGCTACCCAGGGACTAAGCACGTGCTAATAT-
MGA1#MA0336.100.004446132.116360.97838920GGCAGCATATGCTACCCAGGTTTAGAGTGTTCTATAGTCCT-
twi#MA0249.1-20.005543592.638750.97838912GGCAGCATATGCTACCCAGGTCGCATATGTTG+
Pax4#MA0068.140.007621843.628120GGCAGCATATGCTACCCAGGGAAAAATTTCCCATACTCCACTCCCCCCCC+
SPI1#MA0080.1-110.01158515.514516GGCAGCATATGCTACCCAGGCTTCCG-
Ar#MA0007.100.01246095.93138120GGCAGCATATGCTACCCAGGATAAGAACACCCTGTACCCGCC+
ESR1#MA0112.220.01633697.77639118GGCAGCATATGCTACCCAGGAGGTCAGGGTGACCTGGGCC-
Myf#MA0055.1-20.01870688.90444112GGCAGCATATGCTACCCAGGCAGCAGCTGCTG-
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