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MacroAPE 1083:CDX1,2,4: Difference between revisions

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0455-106G5;0.0220276!10534-107G3;0.186175!10429-106D6;0.273524!10464-106H5;0.785327!10827-111C8;0.992808!10789-110H6;0.941697!10828-111C9;0.78341!10788-110H5;0.958595!10792-110H9;0.752716!10765-110E9;0.500142!10829-111D1;0.196687!10830-111D2;0.784967!10831-111D3;0.431081!10832-111D4;0.68508!10833-111D5;0.681965!10764-110E8;0.518672!10770-110F5;0.54061!10399-106A3;0.559927!10400-106A4;0.63022!10405-106A9;0.459078!10834-111D6;0.50509!10835-111D7;0.809989!10836-111D8;0.351892!10837-111D9;0.0933975!10699-109G6;0.67355!10802-111A1;0.310985!10796-110I4;0.0384502!10010-101C1;0.000133309!10810-111A9;0.00402303!10421-106C7;0.000159096!10708-109H6;0.410385!12235-129G3;0.435091!12236-129G4;0.737896!12237-129G5;0.74206!10167-103B5;0.243773!10151-102I7;0.75803!10428-106D5;0.975903!10795-110I3;0.893426!10805-111A4;0.425227!10052-101G7;0.0221616!10189-103D9;0.184119!10589-108D4;0.336394!10425-106D2;0.0188675!10427-106D4;0.156992!10702-109G9;0.111726!10432-106D9;0.19323!10496-107C1;0.339975!10718-109I7;0.293767!10011-101C2;0.315543!10053-101G8;0.410527!10686-109F2;0.210468!10084-102B3;0.107512!10012-101C3;0.245507!10085-102B4;0.936752!10482-107A5;0.34341!10419-106C5;0.00687943!10080-102A8;0.00771041!10760-110E4;0.107079!10709-109H7;0.00586318!10710-109H8;0.092648!10703-109H1;0.785401!10719-109I8;0.0193428!10642-109A3;0.626098!10177-103C6;0.393404!10164-103B2;0.155418!10173-103C2;0.603338!10166-103B4;0.497838!10083-102B2;0.9784!10188-103D8;0.23742!10552-107I3;0.758635!10553-107I4;0.643128!10013-101C4;0.0283444!10536-107G5;0.455443!10618-108G6;0.955987!10423-106C9;0.41008!10785-110H2;0.471871!12238-129G6;0.452696!12239-129G7;0.91292!12240-129G8;0.913292!10416-106C2;0.877611!10801-110I9;0.150862!10766-110F1;0.99133!10824-111C5;0.29576!10825-111C6;0.873406!10826-111C7;0.638654!10454-106G4;0.763498!10409-106B4;0.803895!10638-108I8;0.80421!10636-108I6;0.0405439!10513-107D9;0.767701!10420-106C6;0.000108492!10082-102B1;0.0394635!10014-101C5;0.0674456!10070-101I7;0.310492!10452-106G2;0.13995!10453-106G3;0.71941!10449-106F8;0.77053!10042-101F6;0.830627!10069-101I6;0.502195!10193-103E4;0.0634088!10631-108I1;0.801518!10438-106E6;0.129648!10488-107B2;0.0866684!10196-103E7;0.593196!10071-101I8;0.780992!10071-101I8;0.442786!10041-101F5;0.127948!10451-106G1;0.045578!10450-106F9;0.0195806!10604-108F1;0.41316!10605-108F2;0.333906!10606-108F3;0.330406!10603-108E9;0.261034!10497-107C2;0.199391!10448-106F7;0.221896!10643-109A4;0.680253!10426-106D3;0.399944!10431-106D8;0.128286!10197-103E8;0.0457997!10443-106F2;0.186968!10815-111B5;0.780587!10816-111B6;0.41576!10817-111B7;0.485008!10015-101C6;0.293868!10410-106B5;0.178205!10054-101G9;0.530413!10758-110E2;0.572692!10711-109H9;0.436097!10040-101F4;0.36439!10470-106I2;0.976311!10415-106C1;0.11294!10198-103E9;0.274291!10614-108G2;0.791463!10612-108F9;0.00990399!10549-107H9;0.00596961!10615-108G3;0.147271!10487-107B1;0.304569!10433-106E1;0.603104!10688-109F4;0.963777!10444-106F3;0.369884!10444-106F3;0.542189!10485-107A8;0.438035!10413-106B8;0.581531!10175-103C4;0.75055!10161-103A8;0.425844!12131-128D7;0.958755!10624-108H3;0.281829!10712-109I1;0.0947384!10205-103F7;0.410882!10206-103F8;0.219065!10207-103F9;0.500419!10050-101G5;0.19549!10051-101G6;0.914909!10016-101C7;0.872083!10046-101G1;0.638904!10778-110G4;0.500872!10633-108I3;0.0992494!10818-111B8;0.00329262!10819-111B9;0.00266904!10820-111C1;0.00352651!10484-107A7;0.00466257!10808-111A7;0.0112739!10169-103B7;0.511015!10153-102I9;0.609526!13425-144D5;0.640562!13433-144E4;0.000127245!13437-144E8;0.000395337!11904-125F5;0.00428984!11905-125F6;0.864979!10039-101F3;0.734446!10791-110H8;0.972115!10017-101C8;0.00529735!10045-101F9;0.210785!10509-107D5;0.293613!10839-111E2;0.751736!10692-109F8;0.0401986!10079-102A7;0.0335319!10078-102A6;0.598633!10721-110A1;0.879439!10569-108B2;0.473423!10570-108B3;0.339347!10571-108B4;0.903471!10647-109A8;0.188094!10752-110D5;0.773547!10782-110G8;0.814504!10726-110A6;0.272508!10018-101C9;0.204333!10086-102B5;0.797412!10182-103D2;0.96785!10165-103B3;0.808867!10499-107C4;0.889474!10408-106B3;0.741919!10019-101D1;0.0989627!10068-101I5;0.01563!10075-102A3;0.00364317!10077-102A5;0.054592!10727-110A7;0.383116!10775-110G1;0.229052!10412-106B7;0.699979!12231-129F8;0.186872!12232-129F9;0.0362771!12233-129G1;0.0385116!12234-129G2;0.0233361!10414-106B9;0.0417386!10170-103B8;0.134264!10183-103D3;0.871207!10150-102I6;0.784919!10174-103C3;0.845716!10155-103A2;0.0979261!10038-101F2;0.454238!10838-111E1;0.462066!10759-110E3;0.81638!10514-107E1;0.243606!10465-106H6;0.669242!10691-109F7;0.471173!10843-111E6;0.43731!10844-111E7;0.0170343!11747-123G1;0.0283504!11748-123G2;0.00419169!11749-123G3;0.00283921!11750-123G4;0.0114556!11751-123G5;0.0467751!11840-124H4;0.0690621!11752-123G6;0.0123842!11753-123G7;0.0380931!11754-123G8;0.00844664!11755-123G9;0.0114657!11756-123H1;0.0129509!11833-124G6;0.0542264!11760-123H5;0.303677!11836-124G9;0.0456722!11758-123H3;0.0367843!11835-124G8;0.0175071!11762-123H7;0.311523!11838-124H2;0.938242!11757-123H2;0.453426!11759-123H4;0.0664723!11761-123H6;0.135852!11842-124H6;0.108185!11837-124H1;0.177294!10568-108B1;0.156492!13230-141I8;0.476388!13231-141I9;0.00817576!10696-109G3;0.0256557!10493-107B7;0.085175!10494-107B8;0.470003!10850-111F4;0.787348!10851-111F5;0.176497!10852-111F6;0.0126879!10853-111F7;0.40573!10854-111F8;0.582124!10855-111F9;0.173936!10856-111G1;0.494977!10847-111F1;0.374949!10846-111E9;0.575614!10848-111F2;0.525555!10845-111E8;0.289543!10857-111G2;0.248196!10858-111G3;0.384509!10156-103A3;0.779113!11901-125F2;0.982294!11902-125F3;0.915591!11903-125F4;0.422384!10689-109F5;0.2667!10648-109A9;0.472112!10784-110H1;0.623208!10744-110C6;0.51086!10772-110F7;0.651201!10474-106I6;0.505276!10600-108E6;0.947823!10684-109E9;0.884249!12226-129F3;0.420685!12227-129F4;0.0603813!10508-107D4;0.165663!10539-107G8;0.781273!10607-108F4;0.125014!10555-107I6;0.548813!10774-110F9;0.993006!10637-108I7;0.673872!10663-109C6;0.657602!10728-110A8;0.90239!10729-110A9;0.3023!10430-106D7;0.0138317!10730-110B1;0.176695!10813-111B3;0.212045!10812-111B2;0.00516721!10037-101F1;0.394097!10172-103C1;0.84261!10163-103B1;0.864007!10076-102A4;0.622438!10073-102A1;0.356993!10036-101E9;0.142999!10195-103E6;0.339169!10277-104E7;0.871465!10434-106E2;0.836075!10550-107I1;0.0423301!10545-107H5;0.00187047!10544-107H4;0.154934!10704-109H2;0.23499!10510-107D6;0.728321!10558-107I9;0.676623!10020-101D2;0.985266!10732-110B3;0.350776!10049-101G4;0.677793!10698-109G5;0.00105395!10437-106E5;0.450446!10417-106C3;0.73001!10035-101E8;0.030535!10171-103B9;0.719631!10157-103A4;0.999424!10034-101E7;0.812022!10072-101I9;0.845726!10199-103F1;0.375391!10200-103F2;0.939971!10697-109G4;0.242958!10723-110A3;0.575949!10179-103C8;0.241128!10160-103A7;0.0286123!10180-103C9;0.118945!10162-103A9;0.590011!10021-101D3;0.986592!10840-111E3;0.798396!10706-109H4;0.108116!10033-101E6;0.401805!10032-101E5;0.771731!10490-107B4;0.595673!10439-106E7;0.218533!10022-101D4;0.370781!10176-103C5;0.651173!10469-106I1;0.647296!10067-101I4;0.00939068!10411-106B6;0.989527!10471-106I3;0.844399!10030-101E3;0.110782!10475-106I7;0.991105!10787-110H4;0.11477!10477-106I9;0.120731!10695-109G2;0.849665!11771-123I7;0.399025!11772-123I8;0.781144!11773-123I9;0.657675!10093-102C3;0.50284!10442-106F1;0.683702!10442-106F1;0.289425!10201-103F3;0.243219!10639-108I9;0.610869!11843-124H7;0.154163!11841-124H5;0.445738!10693-109F9;0.505668!10436-106E4;0.038146!10483-107A6;0.0924224!10282-104F3;0.00492511!10023-101D5;0.692053!10066-101I3;0.875766!10065-101I2;0.180981!10800-110I8;0.015178!10610-108F7;0.0100484!10841-111E4;0.0524506!10541-107H1;0.503467!10842-111E5;0.109694!10562-108A4;0.120855!10024-101D6;0.363256!10064-101I1;0.0308332!10609-108F6;0.493699!10048-101G3;0.00580791!10781-110G7;0.580485!10181-103D1;0.0274253!10159-103A6;0.238498!10056-101H2;0.0847972!10737-110B8;0.168227!10025-101D7;0.0981058!10044-101F8;0.109328!10424-106D1;0.041921!10463-106H4;0.490412!10616-108G4;0.0176003!10486-107A9;0.229543!10062-101H8;0.0122872!10202-103F4;0.433494!10158-103A5;0.890844!10441-106E9;0.501753!10031-101E4;0.358565!10063-101H9;0.616183!10063-101H9;0.0635374!11763-123H8;0.782035!11765-123I1;0.154069!11768-123I4;0.0739991!10807-111A6;0.0283075!10790-110H7;0.0877984!10798-110I6;0.246945!10786-110H3;0.0523289!10591-108D6;0.0672978!10593-108D8;0.0208842!10590-108D5;0.00638805!10026-101D8;0.356715!10096-102C6;0.799158!10168-103B6;0.302381!10154-103A1;0.64446!10209-103G2;0.431539!10061-101H7;0.148154!10027-101D9;0.0356049!10043-101F7;0.517556!10783-110G9;0.136879!10028-101E1;0.882243!10060-101H6;0.288166!10203-103F5;0.0724195!10059-101H5;0.224287!10047-101G2;0.113447!10029-101E2;0.546368!10058-101H4;0.0348424!10418-106C4;0.00032027!10492-107B6;0.307659!10694-109G1;0.263351!10797-110I5;0.834262!10057-101H3;0.335126!10100-102D1;0.503164!10055-101H1;0.266335!10204-103F6;0.209675!10191-103E2;0.516325!10563-108A5;0.0266816
|name=CDX1,2,4
|name=CDX1,2,4
|tomtom_result=cad#MA0216.1;-11;8.80658e-05;0.0419193;0.0503056;7;AATAAAAAAATTAATAAA;CAATAAA;-!Abd-B#MA0165.1;-11;0.000106709;0.0507934;0.0503056;7;AATAAAAAAATTAATAAA;TCATAAA;-!NHP6B#MA0346.1;2;0.000253729;0.120775;0.0797434;18;AATAAAAAAATTAATAAA;TCATATTATATATAAATAAA;-!SFL1#MA0377.1;2;0.000762486;0.362943;0.152495;18;AATAAAAAAATTAATAAA;TAGAGAATAGAAGAAATAAAA;+!H2.0#MA0448.1;-11;0.000808686;0.384935;0.152495;7;AATAAAAAAATTAATAAA;TAATTAA;-!CG42234#MA0174.1;-11;0.000974816;0.464012;0.153185;7;AATAAAAAAATTAATAAA;TAATAAA;-!HMG-I/Y#MA0045.1;-3;0.00128229;0.61037;0.15608;15;AATAAAAAAATTAATAAA;CAACAAATGGAAAAAC;+!NHP6A#MA0345.1;2;0.00132432;0.630376;0.15608;18;AATAAAAAAATTAATAAA;ATGACCTATATATAAAAATGA;+!FOXL1#MA0033.1;-8;0.00397717;1.89313;0.344732;8;AATAAAAAAATTAATAAA;TATACATA;+!CG4328#MA0182.1;-11;0.00402187;1.91441;0.344732;7;AATAAAAAAATTAATAAA;CAATAAA;-!Foxd3#MA0041.1;-7;0.00462837;2.2031;0.351935;11;AATAAAAAAATTAATAAA;AAACAAACATTC;-!FOXI1#MA0042.1;-7;0.00514885;2.45085;0.351935;11;AATAAAAAAATTAATAAA;AAACAAACATCC;-!squamosa#MA0082.1;-1;0.00524934;2.49869;0.351935;14;AATAAAAAAATTAATAAA;CCAAAAATGGAAAT;+!SMP1#MA0383.1;1;0.00559896;2.66511;0.351935;18;AATAAAAAAATTAATAAA;TTACCTATAATTAAATTAGCA;+!Foxa2#MA0047.1;-7;0.00741633;3.53017;0.411326;11;AATAAAAAAATTAATAAA;AAGTAAATATTG;-!Lhx3#MA0135.1;-7;0.00857242;4.08047;0.449031;11;AATAAAAAAATTAATAAA;AAATTAATTAATC;+!YOX1#MA0433.1;-10;0.0130709;6.22174;0.61375;8;AATAAAAAAATTAATAAA;TTAATTAA;-!SFP1#MA0378.1;1;0.0136138;6.48019;0.61375;18;AATAAAAAAATTAATAAA;CCGTAGAAAATTTTTTTCAAT;-!br_Z1#MA0010.1;2;0.0137563;6.54799;0.61375;12;AATAAAAAAATTAATAAA;GTAATAAACAAATC;+!TBP#MA0386.1;-3;0.0147641;7.02771;0.61375;15;AATAAAAAAATTAATAAA;GACTAGATATATATATTCGAT;+!onecut#MA0235.1;-11;0.0161875;7.70526;0.61375;7;AATAAAAAAATTAATAAA;AAATCAA;-!Foxq1#MA0040.1;-12;0.0162891;7.7536;0.61375;6;AATAAAAAAATTAATAAA;AATAAACAATA;-!HCM1#MA0317.1;-13;0.0169246;8.05612;0.61375;5;AATAAAAAAATTAATAAA;ATAAACAA;+!PHO2#MA0356.1;-11;0.0176842;8.41768;0.617543;6;AATAAAAAAATTAATAAA;TATTAT;-!CG15696#MA0176.1;-11;0.01945;9.25821;0.65495;7;AATAAAAAAATTAATAAA;CAATTAA;-
}}
}}

Latest revision as of 12:15, 7 September 2012

Full Name: CDX1,2,4

Motif matrix
null

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
cad#MA0216.1-118.80658e-050.04191930.05030567AATAAAAAAATTAATAAACAATAAA-
Abd-B#MA0165.1-110.0001067090.05079340.05030567AATAAAAAAATTAATAAATCATAAA-
NHP6B#MA0346.120.0002537290.1207750.079743418AATAAAAAAATTAATAAATCATATTATATATAAATAAA-
SFL1#MA0377.120.0007624860.3629430.15249518AATAAAAAAATTAATAAATAGAGAATAGAAGAAATAAAA+
H2.0#MA0448.1-110.0008086860.3849350.1524957AATAAAAAAATTAATAAATAATTAA-
CG42234#MA0174.1-110.0009748160.4640120.1531857AATAAAAAAATTAATAAATAATAAA-
HMG-I/Y#MA0045.1-30.001282290.610370.1560815AATAAAAAAATTAATAAACAACAAATGGAAAAAC+
NHP6A#MA0345.120.001324320.6303760.1560818AATAAAAAAATTAATAAAATGACCTATATATAAAAATGA+
FOXL1#MA0033.1-80.003977171.893130.3447328AATAAAAAAATTAATAAATATACATA+
CG4328#MA0182.1-110.004021871.914410.3447327AATAAAAAAATTAATAAACAATAAA-
Foxd3#MA0041.1-70.004628372.20310.35193511AATAAAAAAATTAATAAAAAACAAACATTC-
FOXI1#MA0042.1-70.005148852.450850.35193511AATAAAAAAATTAATAAAAAACAAACATCC-
squamosa#MA0082.1-10.005249342.498690.35193514AATAAAAAAATTAATAAACCAAAAATGGAAAT+
SMP1#MA0383.110.005598962.665110.35193518AATAAAAAAATTAATAAATTACCTATAATTAAATTAGCA+
Foxa2#MA0047.1-70.007416333.530170.41132611AATAAAAAAATTAATAAAAAGTAAATATTG-
Lhx3#MA0135.1-70.008572424.080470.44903111AATAAAAAAATTAATAAAAAATTAATTAATC+
YOX1#MA0433.1-100.01307096.221740.613758AATAAAAAAATTAATAAATTAATTAA-
SFP1#MA0378.110.01361386.480190.6137518AATAAAAAAATTAATAAACCGTAGAAAATTTTTTTCAAT-
br_Z1#MA0010.120.01375636.547990.6137512AATAAAAAAATTAATAAAGTAATAAACAAATC+
TBP#MA0386.1-30.01476417.027710.6137515AATAAAAAAATTAATAAAGACTAGATATATATATTCGAT+
onecut#MA0235.1-110.01618757.705260.613757AATAAAAAAATTAATAAAAAATCAA-
Foxq1#MA0040.1-120.01628917.75360.613756AATAAAAAAATTAATAAAAATAAACAATA-
HCM1#MA0317.1-130.01692468.056120.613755AATAAAAAAATTAATAAAATAAACAA+
PHO2#MA0356.1-110.01768428.417680.6175436AATAAAAAAATTAATAAATATTAT-
CG15696#MA0176.1-110.019459.258210.654957AATAAAAAAATTAATAAACAATTAA-
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