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Latest revision as of 14:35, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:110182489..110182589,+p1@E2f7
Mm9::chr10:4541086..4541128,+p1@Fbxo5
Mm9::chr10:4541132..4541146,+p2@Fbxo5
Mm9::chr10:4541176..4541187,+p4@Fbxo5
Mm9::chr10:53316866..53316881,+p2@Asf1a
Mm9::chr10:68815616..68815629,-p2@Cdk1
Mm9::chr10:68815634..68815677,-p1@Cdk1
Mm9::chr10:87609612..87609681,-p1@4930547N16Rik
Mm9::chr10:90633245..90633273,-p4@Tmpo
Mm9::chr10:90634270..90634355,-p1@Tmpo
Mm9::chr11:101413151..101413207,-p1@Brca1
Mm9::chr11:102110205..102110251,+p2@BC030867
Mm9::chr11:102786400..102786444,-p1@Kif18b
Mm9::chr11:11708926..11708970,-p1@Fignl1
Mm9::chr11:117687098..117687186,-p1@Tk1
Mm9::chr11:117710600..117710654,+p1@Birc5
Mm9::chr11:16851374..16851420,+p1@Fbxo48
Mm9::chr11:23156001..23156105,+p1@Xpo1
Mm9::chr11:3102615..3102657,+p2@Eif4enif1
Mm9::chr11:34647105..34647128,-p1@Ccdc99
Mm9::chr11:34647133..34647165,-p2@Ccdc99
Mm9::chr11:40546875..40546944,-p1@Hmmr
Mm9::chr11:40547141..40547205,+p2@Nudcd2
Mm9::chr11:68859142..68859215,+p1@Aurkb
Mm9::chr11:70833095..70833119,+p1@Mis12
Mm9::chr11:78115112..78115136,+p1@Spag5
Mm9::chr11:79902928..79902971,+p1@Atad5
Mm9::chr11:86014646..86014702,-p1@Brip1
Mm9::chr11:86922158..86922221,-p1@Prr11
Mm9::chr11:86922683..86922697,+p3@Fam33a
Mm9::chr11:86922754..86922776,+p1@Fam33a
Mm9::chr11:87861195..87861229,+p1@Srsf1
Mm9::chr11:94515028..94515075,-p1@Eme1
Mm9::chr11:98769141..98769180,+p1@Cdc6
Mm9::chr11:98885493..98885511,-p1@Top2a
Mm9::chr12:101121611..101121638,-p1@2610021K21Rik
Mm9::chr12:11272574..11272622,-p1@Gen1
Mm9::chr12:114067562..114067637,-p1@Cdca4
Mm9::chr12:117643576..117643627,-p1@D430020J02Rik
Mm9::chr12:117643630..117643658,-p2@D430020J02Rik
Mm9::chr12:117643870..117643939,+p1@Ncapg2
Mm9::chr12:25393139..25393157,+p1@Rrm2
Mm9::chr12:33172307..33172314,-p@chr12:33172307..33172314
-
Mm9::chr12:52449252..52449355,+p1@G2e3
Mm9::chr12:66273547..66273605,-p1@Mis18bp1
Mm9::chr12:70269795..70269826,+p1@Lrr1
Mm9::chr12:70269828..70269841,+p2@Lrr1
Mm9::chr12:70298114..70298144,-p1@1110034A24Rik
Mm9::chr12:70329154..70329171,-p1@Pole2
Mm9::chr13:101545799..101545848,-p1@Cenph
Mm9::chr13:105019009..105019062,+p1@Cenpk
Mm9::chr13:105019063..105019070,+p4@Cenpk
Mm9::chr13:105019074..105019085,+p2@Cenpk
Mm9::chr13:21845296..21845323,+p@chr13:21845296..21845323
+
Mm9::chr13:24853744..24853819,-p1@Gmnn
Mm9::chr13:3917403..3917465,-p1@Net1
Mm9::chr13:47201512..47201539,-p2@Dek
Mm9::chr13:55431084..55431137,-p1@Mxd3
Mm9::chr13:77274677..77274752,-p1@Ankrd32
Mm9::chr14:47896467..47896523,-p1@Wdhd1
Mm9::chr14:48037827..48037834,-p4@Dlgap5
Mm9::chr14:48037841..48037866,-p1@Dlgap5
Mm9::chr14:48037869..48037892,-p2@Dlgap5
Mm9::chr14:48037896..48037907,-p3@Dlgap5
Mm9::chr14:58444965..58445017,-p1@F630043A04Rik
Mm9::chr14:58445022..58445040,-p2@F630043A04Rik
Mm9::chr14:62267599..62267644,-p1@Dleu2
Mm9::chr14:62267648..62267651,-p3@Dleu2
Mm9::chr14:62950922..62950947,+p1@Rnaseh2b
Mm9::chr14:66424684..66424734,+p1@Pbk
Mm9::chr14:66452726..66452742,-p2@Esco2
Mm9::chr14:66452749..66452768,-p1@Esco2
Mm9::chr14:66452777..66452789,-p3@Esco2
Mm9::chr14:66452800..66452811,-p5@Esco2
Mm9::chr14:68313676..68313680,-p@chr14:68313676..68313680
-
Mm9::chr14:68333400..68333482,-p1@Cdca2
Mm9::chr14:68333642..68333697,-p2@Cdca2
Mm9::chr14:73725719..73725750,-p4@Rb1
Mm9::chr14:87257361..87257362,-p@chr14:87257361..87257362
-
Mm9::chr14:87540938..87540955,-p3@Diap3
Mm9::chr14:87540965..87541010,-p1@Diap3
Mm9::chr14:87541013..87541046,-p2@Diap3
Mm9::chr14:99445625..99445648,+p2@6720463M24Rik
Mm9::chr14:99445653..99445682,+p1@6720463M24Rik
Mm9::chr15:103070378..103070424,+p3@Gm10052
p3@Hnrnpa1
Mm9::chr15:57966602..57966650,-p1@Atad2
Mm9::chr15:85690119..85690174,+p1@Gtse1
Mm9::chr15:98905399..98905436,+p1@Troap
Mm9::chr15:99464392..99464396,-p@chr15:99464392..99464396
-
Mm9::chr15:99482011..99482061,-p1@Racgap1
Mm9::chr16:14163409..14163445,+p1@Nde1
Mm9::chr16:15637370..15637478,-p1@Mcm4
Mm9::chr16:18784402..18784406,-p@chr16:18784402..18784406
-
Mm9::chr16:18811677..18811702,-p1@Cdc45
Mm9::chr16:18811708..18811728,-p2@Cdc45
Mm9::chr16:18811731..18811736,-p3@Cdc45
Mm9::chr16:37011844..37011877,+p1@Polq
Mm9::chr16:48994310..48994352,+p1@C330027C09Rik
Mm9::chr16:98303597..98303604,-p2@A630089N07Rik
Mm9::chr17:24388267..24388326,-p1@Ccnf
Mm9::chr17:24388327..24388342,-p2@Ccnf
Mm9::chr17:34027529..34027597,-p1@Kifc1
p1@LOC100044006
p1@LOC100044746
Mm9::chr17:35653725..35653780,-p1@Tcf19
Mm9::chr17:53828556..53828578,-p2@Sgol1
Mm9::chr17:53828591..53828634,-p1@Sgol1
Mm9::chr17:56442754..56442772,+p5@Uhrf1
Mm9::chr17:56442776..56442801,+p3@Uhrf1
Mm9::chr17:71876098..71876157,-p1@Ndc80
Mm9::chr17:71876159..71876177,-p2@Ndc80
Mm9::chr17:95149435..95149461,+p1@2700099C18Rik
Mm9::chr17:95149465..95149481,+p2@2700099C18Rik
Mm9::chr18:11816340..11816385,+p2@Rbbp8
Mm9::chr18:34784609..34784654,+p1@Kif20a
Mm9::chr18:34784663..34784685,+p2@Kif20a
Mm9::chr18:34910999..34911011,-p2@Cdc25c
Mm9::chr18:34911196..34911214,-p3@Cdc25c
Mm9::chr18:74367390..74367413,-p2@Ska1
Mm9::chr19:10278370..10278438,-p1@Fen1
Mm9::chr19:34996841..34996894,+p1@Kif20b
Mm9::chr19:37450849..37450912,+p1@Kif11
Mm9::chr19:38129492..38129537,+p1@Cep55
Mm9::chr19:38129548..38129565,+p2@Cep55
Mm9::chr19:39005399..39005410,+p4@Hells
Mm9::chr19:39005418..39005431,+p2@Hells
Mm9::chr19:8893768..8893791,-p1@Ttc9c
Mm9::chr19:9973940..9973991,-p1@Incenp
Mm9::chr1:129998989..129999062,-p1@Zranb3
Mm9::chr1:138362913..138362955,+p@chr1:138362913..138362955
+
Mm9::chr1:138362960..138362982,+p@chr1:138362960..138362982
+
Mm9::chr1:141351324..141351402,+p1@Aspm
Mm9::chr1:141351405..141351419,+p2@Aspm
Mm9::chr1:165924868..165924896,-p2@BC055324
Mm9::chr1:165924898..165924939,-p1@BC055324
Mm9::chr1:171461474..171461568,-p1@Nuf2
Mm9::chr1:177810906..177810939,+p1@Exo1
Mm9::chr1:191511923..191511938,-p2@Cenpf
Mm9::chr1:191511953..191511977,-p1@Cenpf
Mm9::chr1:192886880..192886917,+p1@Nsl1
Mm9::chr1:33678261..33678268,-p@chr1:33678261..33678268
-
Mm9::chr1:33726590..33726637,-p1@Prim2
Mm9::chr1:58052824..58052903,+p1@Sgol2
Mm9::chr1:71076758..71076761,-p@chr1:71076758..71076761
-
Mm9::chr1:71149475..71149553,-p1@Bard1
Mm9::chr1:95239311..95239380,-p1@Pask
Mm9::chr2:109120966..109121020,+p1@Kif18a
Mm9::chr2:109857963..109858030,+p1@Ccdc34
Mm9::chr2:113688812..113688901,-p1@Arhgap11a
Mm9::chr2:118423968..118424003,+p1@Bub1b
Mm9::chr2:118424007..118424036,+p2@Bub1b
Mm9::chr2:118639931..118639971,+p1@D2Ertd750e
Mm9::chr2:118639973..118639997,+p2@D2Ertd750e
Mm9::chr2:118872865..118872895,+p1@Casc5
Mm9::chr2:118872898..118872950,+p2@Casc5
Mm9::chr2:118938545..118938618,+p1@Rad51
Mm9::chr2:119444191..119444246,-p1@Oip5
Mm9::chr2:119444457..119444473,+p1@Nusap1
Mm9::chr2:120557239..120557270,-p1@Cdan1
Mm9::chr2:121332484..121332528,+p1@Wdr76
Mm9::chr2:125450801..125450859,-p1@Cep152
Mm9::chr2:126959620..126959644,-p2@Ncaph
Mm9::chr2:126959645..126959688,-p1@Ncaph
Mm9::chr2:127657553..127657611,-p1@Bub1
Mm9::chr2:129122884..129122937,-p1@Ckap2l
Mm9::chr2:129122941..129122952,-p2@Ckap2l
Mm9::chr2:129626187..129626262,+p1@Stk35
Mm9::chr2:152673697..152673708,+p2@Tpx2
Mm9::chr2:152673729..152673812,+p1@Tpx2
Mm9::chr2:157030219..157030278,-p1@Rbl1
Mm9::chr2:164595421..164595454,+p1@Ube2c
Mm9::chr2:164595463..164595474,+p3@Ube2c
Mm9::chr2:174120902..174120943,-p1@Nespas
Mm9::chr2:23011384..23011445,-p1@Mastl
Mm9::chr2:3392226..3392247,-p1@Suv39h2
Mm9::chr2:4933762..4933812,-p1@Mcm10
Mm9::chr2:69044203..69044248,-p1@Spc25
Mm9::chr3:100773567..100773599,-p1@Ttf2
Mm9::chr3:116332180..116332184,+p@chr3:116332180..116332184
+
Mm9::chr3:127256380..127256430,+p1@4930422G04Rik
Mm9::chr3:134875560..134875616,+p1@Cenpe
Mm9::chr3:159158372..159158402,+p1@Depdc1a
Mm9::chr3:27052728..27052764,-p1@Ect2
Mm9::chr3:27052766..27052777,-p2@Ect2
Mm9::chr3:36470840..36470853,-p2@Ccna2
Mm9::chr3:36470874..36470925,-p1@Ccna2
Mm9::chr3:68848619..68848685,-p1@Trim59
Mm9::chr3:79432996..79433037,+p1@4930579G24Rik
Mm9::chr3:87885919..87885973,+p1@Iqgap3
Mm9::chr4:108252050..108252075,+p1@Orc1
Mm9::chr4:11118923..11118936,+p1@Ccne2
Mm9::chr4:114672779..114672794,+p1@Stil
Mm9::chr4:114672795..114672814,+p2@Stil
Mm9::chr4:11486061..11486126,+p1@Rad54b
Mm9::chr4:116300091..116300108,-p1@Nasp
Mm9::chr4:116855142..116855208,-p1@Kif2c
Mm9::chr4:118109889..118109909,-p1@Cdc20
Mm9::chr4:124614096..124614168,-p1@Cdca8
Mm9::chr4:126234215..126234236,+p2@Clspn
Mm9::chr4:126234238..126234264,+p1@Clspn
Mm9::chr4:134066917..134066991,+p1@2610002D18Rik
Mm9::chr4:43512489..43512549,-p1@E130306D19Rik
Mm9::chr4:44313775..44313808,+p2@Melk
Mm9::chr4:44313812..44313874,+p1@Melk
Mm9::chr4:52452096..52452104,+p2@Smc2
Mm9::chr4:52452107..52452159,+p1@Smc2
Mm9::chr5:108561822..108561903,+p1@Ccdc18
Mm9::chr5:111268992..111269041,+p1@Chek2
Mm9::chr5:124199705..124199744,+p1@Kntc1
Mm9::chr5:124889900..124890000,+p2@Setd8
Mm9::chr5:28117880..28117960,-p1@Paxip1
Mm9::chr5:30969263..30969336,+p1@Cenpa
Mm9::chr5:33994961..33994976,-p1@Slbp
Mm9::chr5:34001216..34001265,+p1@Tacc3
Mm9::chr5:34163023..34163090,+p2@Whsc1
Mm9::chr5:46061146..46061184,+p1@Ncapg
Mm9::chr5:77017840..77017862,+p2@Cep135
Mm9::chr6:120307360..120307418,-p1@Ccdc77
Mm9::chr6:124780211..124780227,+p2@Cdca3
Mm9::chr6:124780236..124780269,+p1@Cdca3
Mm9::chr6:125141553..125141638,-p1@Ncapd2
Mm9::chr6:125141639..125141681,-p2@Ncapd2
Mm9::chr6:126889542..126889622,-p1@Rad51ap1
Mm9::chr6:128312879..128312944,-p1@5930416I19Rik
Mm9::chr6:134879107..134879121,+p2@1190002F15Rik
Mm9::chr6:134879136..134879182,+p1@1190002F15Rik
Mm9::chr6:29997979..29998049,+p1@Nrf1
Mm9::chr6:47544966..47545046,-p1@Ezh2
Mm9::chr6:51420632..51420672,+p1@Cbx3
p1@Gm10068
p1@Gm5196
p1@Gm6917
p1@Gm7469
Mm9::chr6:66485386..66485406,+p2@LOC100045924
p2@Mad2l1
Mm9::chr6:66485412..66485476,+p1@LOC100045924
p1@Mad2l1
Mm9::chr6:87622136..87622173,-p1@Aplf
Mm9::chr6:88848658..88848707,-p1@Mcm2
Mm9::chr7:109214252..109214285,+p2@Trpc2
Mm9::chr7:109590259..109590270,+p4@Rrm1
Mm9::chr7:109590290..109590339,+p2@Rrm1
Mm9::chr7:109590345..109590402,+p1@Rrm1
Mm9::chr7:117265547..117265649,+p1@Wee1
Mm9::chr7:129276377..129276457,-p1@Palb2
Mm9::chr7:134005945..134005961,+p1@Hirip3
Mm9::chr7:134170081..134170122,-p2@Maz
Mm9::chr7:134185907..134185928,-p1@Kif22
Mm9::chr7:134185935..134185958,-p2@Kif22
Mm9::chr7:13864127..13864223,+p1@Lig1
Mm9::chr7:13864225..13864249,+p2@Lig1
Mm9::chr7:142908094..142908155,-p1@Mki67
Mm9::chr7:142908156..142908163,-p4@Mki67
Mm9::chr7:148629888..148629915,-p1@Lrdd
Mm9::chr7:56136349..56136360,-p5@E2f8
Mm9::chr7:56136362..56136400,-p1@E2f8
Mm9::chr7:56136402..56136420,-p3@E2f8
Mm9::chr7:56137011..56137041,-p2@E2f8
Mm9::chr7:86537191..86537232,+p1@Fanci
Mm9::chr7:86805097..86805147,+p1@5730590G19Rik
Mm9::chr7:87439345..87439378,+p1@Prc1
Mm9::chr7:87679954..87680007,-p1@Blm
Mm9::chr8:125842453..125842479,-p1@Fanca
Mm9::chr8:18595144..18595186,+p2@Mcph1
Mm9::chr8:4779513..4779591,-p1@Shcbp1
Mm9::chr8:54724299..54724375,-p1@Neil3
Mm9::chr8:59990630..59990666,+p1@Hmgb2
Mm9::chr8:73929902..73929949,+p1@Ankle1
Mm9::chr8:87823791..87823827,+p1@Orc6
Mm9::chr8:96738467..96738508,+p1@Nup93
Mm9::chr9:109778045..109778095,+p1@Cdc25a
Mm9::chr9:122860169..122860224,+p1@Kif15
Mm9::chr9:20757246..20757278,-p1@Dnmt1
Mm9::chr9:20757282..20757325,-p2@Dnmt1
Mm9::chr9:22193530..22193543,-p2@Anln
Mm9::chr9:22193557..22193640,-p1@Anln
Mm9::chr9:26838303..26838357,+p@chr9:26838303..26838357
+
Mm9::chr9:36534173..36534192,-p1@Chek1
Mm9::chr9:37155924..37155951,-p1@Ccdc15
Mm9::chr9:44143275..44143303,+p@chr9:44143275..44143303
+
Mm9::chr9:61794537..61794551,-p1@Kif23
Mm9::chr9:61794561..61794572,-p2@Kif23
Mm9::chr9:61794575..61794586,-p3@Kif23
Mm9::chr9:64020696..64020725,-p1@Zwilch
Mm9::chr9:65434956..65434992,+p2@Pif1
Mm9::chr9:65434994..65435028,+p1@Pif1
Mm9::chr9:65738098..65738150,+p1@2810417H13Rik
p1@Gm15428
Mm9::chr9:65738151..65738165,+p2@2810417H13Rik
p2@Gm15428
Mm9::chr9:70269298..70269336,-p2@Ccnb2
Mm9::chr9:83728291..83728343,+p1@Ttk
Mm9::chrX:130842678..130842748,+p1@Cenpi
Mm9::chrX:161418592..161418656,+p1@Fancb
Mm9::chrX:71212312..71212347,-p@chrX:71212312..71212347
-
Mm9::chrX:90877452..90877525,-p1@Pola1
Mm9::chrX:97821411..97821497,+p1@Kif4
Mm9::chrX:97851786..97851790,+p@chrX:97851786..97851790
+
Mm9::chrX:99352320..99352401,-p1@Ercc6l
Mm9::chrX:99352404..99352435,-p2@Ercc6l


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0007049cell cycle0
GO:0022402cell cycle process0
GO:0006259DNA metabolic process2.0066440102997e-72
GO:0051301cell division7.33282191702005e-54
GO:0022403cell cycle phase4.48962712688836e-52
GO:0000279M phase3.99935061471844e-51
GO:0007067mitosis2.24275299020316e-48
GO:0000087M phase of mitotic cell cycle2.6139251063463e-48
GO:0000278mitotic cell cycle3.0903794168841e-47
GO:0005634nucleus1.31574129279882e-44
GO:0043228non-membrane-bound organelle3.62789020569374e-38
GO:0043232intracellular non-membrane-bound organelle3.62789020569374e-38
GO:0005694chromosome2.73639652843954e-31
GO:0000775chromosome, pericentric region5.86275135327594e-28
GO:0044427chromosomal part1.25811238265441e-26
GO:0044446intracellular organelle part4.67000487441161e-26
GO:0044422organelle part6.36693669893789e-26
GO:0005622intracellular3.87474890885439e-21
GO:0005524ATP binding5.75558088975734e-21
GO:0032559adenyl ribonucleotide binding1.42775164948528e-20
GO:0043229intracellular organelle3.9752282759242e-20
GO:0043226organelle4.12658593626287e-20
GO:0030554adenyl nucleotide binding4.92816079479252e-19
GO:0043231intracellular membrane-bound organelle2.15263462417784e-18
GO:0043227membrane-bound organelle2.25723314393277e-18
GO:0006996organelle organization and biogenesis2.61782255834896e-18
GO:0044424intracellular part1.95278787773504e-17
GO:0006974response to DNA damage stimulus5.70886503420649e-17
GO:0007059chromosome segregation1.23509887485781e-16
GO:0009719response to endogenous stimulus3.38060137458985e-16
GO:0006260DNA replication6.20957710442414e-16
GO:0006281DNA repair1.5559948958736e-15
GO:0015630microtubule cytoskeleton6.80095258553291e-15
GO:0000166nucleotide binding2.48940826139709e-14
GO:0032555purine ribonucleotide binding3.64611390716958e-14
GO:0032553ribonucleotide binding3.64611390716958e-14
GO:0017076purine nucleotide binding3.75623064213396e-13
GO:0005874microtubule4.0060337995512e-13
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process8.57337346481312e-13
GO:0043283biopolymer metabolic process5.4862900078687e-12
GO:0000776kinetochore2.16861101922964e-11
GO:0006950response to stress1.21281426340099e-10
GO:0007017microtubule-based process1.73465048010574e-10
GO:0051726regulation of cell cycle2.65381892658252e-10
GO:0044430cytoskeletal part3.28416762428007e-10
GO:0003777microtubule motor activity3.49576078580517e-10
GO:0003677DNA binding4.06809715702429e-10
GO:0030261chromosome condensation5.57455300557826e-10
GO:0051276chromosome organization and biogenesis1.01343828165011e-09
GO:0005875microtubule associated complex3.20229939905323e-09
GO:0007076mitotic chromosome condensation1.56785524866687e-08
GO:0005819spindle2.9656399349531e-08
GO:0005856cytoskeleton3.58391702090341e-08
GO:0000793condensed chromosome9.8933311964885e-08
GO:0000070mitotic sister chromatid segregation1.00479356106137e-07
GO:0000819sister chromatid segregation1.00479356106137e-07
GO:0000074regulation of progression through cell cycle1.84164004401226e-07
GO:0043170macromolecule metabolic process4.99397228388735e-07
GO:0003676nucleic acid binding8.74710269684077e-07
GO:0007018microtubule-based movement1.09365486512051e-06
GO:0016043cellular component organization and biogenesis1.76758584232405e-06
GO:0043234protein complex2.61166700201745e-06
GO:0004386helicase activity3.86890102053962e-06
GO:0030705cytoskeleton-dependent intracellular transport4.37075803856758e-06
GO:0051327M phase of meiotic cell cycle4.79978355201302e-06
GO:0007126meiosis4.79978355201302e-06
GO:0051321meiotic cell cycle5.19469652376042e-06
GO:0008094DNA-dependent ATPase activity5.23872588028561e-06
GO:0044428nuclear part9.64054299549575e-06
GO:0007010cytoskeleton organization and biogenesis1.18217196005003e-05
GO:0005871kinesin complex1.69603038091523e-05
GO:0006323DNA packaging2.12441342047488e-05
GO:0005657replication fork2.61714557686475e-05
GO:0016568chromatin modification3.69905362396676e-05
GO:0006261DNA-dependent DNA replication4.33764847554113e-05
GO:0006310DNA recombination5.9939443932324e-05
GO:0006270DNA replication initiation6.74967996762051e-05
GO:0045120pronucleus6.74967996762051e-05
GO:0050794regulation of cellular process6.74967996762051e-05
GO:0032991macromolecular complex6.81472500710803e-05
GO:0006325establishment and/or maintenance of chromatin architecture8.00280475170027e-05
GO:0044238primary metabolic process0.000114197007027286
GO:0044237cellular metabolic process0.000134975286361835
GO:0007098centrosome cycle0.000253477040318315
GO:0044454nuclear chromosome part0.000347204849998549
GO:0003684damaged DNA binding0.000347204849998549
GO:0016538cyclin-dependent protein kinase regulator activity0.000347204849998549
GO:0051297centrosome organization and biogenesis0.000382218542080462
GO:0031023microtubule organizing center organization and biogenesis0.000563626543198586
GO:0042054histone methyltransferase activity0.000584973007393438
GO:0000910cytokinesis0.000677769979001985
GO:0008608attachment of spindle microtubules to kinetochore0.000720984437635715
GO:0000785chromatin0.000720984437635715
GO:0000228nuclear chromosome0.000743084517195092
GO:0050789regulation of biological process0.000940830586568273
GO:0008283cell proliferation0.000949040521769148
GO:0004674protein serine/threonine kinase activity0.00113885690700605
GO:0008276protein methyltransferase activity0.00191767146350192
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.00192284548533968
GO:0030496midbody0.00193872079149924
GO:0016728oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor0.00193872079149924
GO:0004748ribonucleoside-diphosphate reductase activity0.00193872079149924
GO:0051298centrosome duplication0.00193872079149924
GO:0051053negative regulation of DNA metabolic process0.00201371363449296
GO:0042770DNA damage response, signal transduction0.0022735981824686
GO:0018024histone-lysine N-methyltransferase activity0.00356206341490605
GO:0016278lysine N-methyltransferase activity0.00356206341490605
GO:0016279protein-lysine N-methyltransferase activity0.00356206341490605
GO:0000777condensed chromosome kinetochore0.00357383186213541
GO:0040020regulation of meiosis0.00357383186213541
GO:0000089mitotic metaphase0.00357383186213541
GO:0005658alpha DNA polymerase:primase complex0.00357383186213541
GO:0043414biopolymer methylation0.00432319652125231
GO:0003678DNA helicase activity0.00476811600802742
GO:0031323regulation of cellular metabolic process0.00489822149599812
GO:0031570DNA integrity checkpoint0.00545605956193634
GO:0032259methylation0.00545605956193634
GO:0016725oxidoreductase activity, acting on CH or CH2 groups0.00564645515964749
GO:0051052regulation of DNA metabolic process0.0062086723863188
GO:0017111nucleoside-triphosphatase activity0.00674402003557085
GO:0065007biological regulation0.0067661355505471
GO:0044464cell part0.00716291626523161
GO:0005623cell0.00716291626523161
GO:0004519endonuclease activity0.00768737655136651
GO:0051323metaphase0.0078724945639034
GO:0010369chromocenter0.0078724945639034
GO:0000779condensed chromosome, pericentric region0.0078724945639034
GO:0042623ATPase activity, coupled0.00793641549025517
GO:0004672protein kinase activity0.00843544640443569
GO:0006333chromatin assembly or disassembly0.00889792336539769
GO:0016462pyrophosphatase activity0.00948026668182306
GO:0004518nuclease activity0.00948026668182306
GO:0019222regulation of metabolic process0.00948039777244114
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides0.00984817039746807
GO:0016817hydrolase activity, acting on acid anhydrides0.00989959760523752
GO:0010468regulation of gene expression0.00989959760523752
GO:0007405neuroblast proliferation0.0102420167467546
GO:0000075cell cycle checkpoint0.0102420167467546
GO:0006350transcription0.0115599414788777
GO:0000724double-strand break repair via homologous recombination0.0129332798457672
GO:0000725recombinational repair0.0129332798457672
GO:0042393histone binding0.0129332798457672
GO:0008156negative regulation of DNA replication0.0129332798457672
GO:0051651maintenance of cellular localization0.0129332798457672
GO:0003682chromatin binding0.0130755390969123
GO:0045449regulation of transcription0.0135583869660049
GO:0045934negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0150766306164611
GO:0019887protein kinase regulator activity0.0150766306164611
GO:0001824blastocyst development0.0150766306164611
GO:0043601nuclear replisome0.0150766306164611
GO:0005876spindle microtubule0.0150766306164611
GO:0006268DNA unwinding during replication0.0150766306164611
GO:0032508DNA duplex unwinding0.0150766306164611
GO:0030894replisome0.0150766306164611
GO:0007140male meiosis0.0150766306164611
GO:0000922spindle pole0.0150766306164611
GO:0032392DNA geometric change0.0150766306164611
GO:0018105peptidyl-serine phosphorylation0.0150766306164611
GO:0018209peptidyl-serine modification0.0150766306164611
GO:0000226microtubule cytoskeleton organization and biogenesis0.0152057036345092
GO:0016887ATPase activity0.0161586016235131
GO:0032774RNA biosynthetic process0.0168676325667711
GO:0008170N-methyltransferase activity0.0175595855609345
GO:0043596nuclear replication fork0.0179934764524165
GO:0004520endodeoxyribonuclease activity0.0179934764524165
GO:0004003ATP-dependent DNA helicase activity0.0179934764524165
GO:0008757S-adenosylmethionine-dependent methyltransferase activity0.020191058761672
GO:0006275regulation of DNA replication0.0216142127403844
GO:0000792heterochromatin0.0217666916227282
GO:0045786negative regulation of progression through cell cycle0.0222811623518706
GO:0016569covalent chromatin modification0.0232689624267824
GO:0019207kinase regulator activity0.0239489736563508
GO:0006730one-carbon compound metabolic process0.0274159640499316
GO:0006355regulation of transcription, DNA-dependent0.0274177856365633
GO:0046907intracellular transport0.028670491613808
GO:0031324negative regulation of cellular metabolic process0.0289777416022248
GO:0051325interphase0.0298421130667059
GO:0051329interphase of mitotic cell cycle0.0298421130667059
GO:0008026ATP-dependent helicase activity0.0302138806081412
GO:0005813centrosome0.0315052879335337
GO:0043687post-translational protein modification0.031639475213507
GO:0006351transcription, DNA-dependent0.0320894327479285
GO:0040029regulation of gene expression, epigenetic0.0331234515049716
GO:0031981nuclear lumen0.0336222035336408
GO:0051641cellular localization0.0338761722539801
GO:0006305DNA alkylation0.0338761722539801
GO:0006306DNA methylation0.0338761722539801
GO:0051235maintenance of localization0.0338761722539801
GO:0016571histone methylation0.0338761722539801
GO:0004527exonuclease activity0.0338761722539801
GO:0008017microtubule binding0.0338761722539801
GO:0016773phosphotransferase activity, alcohol group as acceptor0.0338761722539801
GO:0031508centric heterochromatin formation0.0338761722539801
GO:0008054cyclin catabolic process0.0338761722539801
GO:0051661maintenance of centrosome localization0.0338761722539801
GO:0021873forebrain neuroblast division0.0338761722539801
GO:0043486histone exchange0.0338761722539801
GO:0045836positive regulation of meiosis0.0338761722539801
GO:0007056spindle assembly involved in female meiosis0.0338761722539801
GO:0051383kinetochore organization and biogenesis0.0338761722539801
GO:0007057spindle assembly involved in female meiosis I0.0338761722539801
GO:0043140ATP-dependent 3'-5' DNA helicase activity0.0338761722539801
GO:0009786regulation of asymmetric cell division0.0338761722539801
GO:0051438regulation of ubiquitin-protein ligase activity0.0338761722539801
GO:0015616DNA translocase activity0.0338761722539801
GO:0051352negative regulation of ligase activity0.0338761722539801
GO:0019046reactivation of latent virus0.0338761722539801
GO:00431383'-5' DNA helicase activity0.0338761722539801
GO:0040001establishment of mitotic spindle localization0.0338761722539801
GO:0051642centrosome localization0.0338761722539801
GO:0051440regulation of ubiquitin-protein ligase activity during meiotic cell cycle0.0338761722539801
GO:0048256flap endonuclease activity0.0338761722539801
GO:0043044ATP-dependent chromatin remodeling0.0338761722539801
GO:0051442negative regulation of ubiquitin-protein ligase activity during meiotic cell cycle0.0338761722539801
GO:0043515kinetochore binding0.0338761722539801
GO:0005971ribonucleoside-diphosphate reductase complex0.0338761722539801
GO:0045769negative regulation of asymmetric cell division0.0338761722539801
GO:0051154negative regulation of striated muscle cell differentiation0.0338761722539801
GO:0051444negative regulation of ubiquitin-protein ligase activity0.0338761722539801
GO:0031055chromatin remodeling at centromere0.0338761722539801
GO:0019042latent virus infection0.0338761722539801
GO:0051782negative regulation of cell division0.0338761722539801
GO:0031616spindle pole centrosome0.0338761722539801
GO:0055057neuroblast division0.0338761722539801
GO:0006468protein amino acid phosphorylation0.0351860676439668
GO:0043566structure-specific DNA binding0.0366444649444473
GO:0000077DNA damage checkpoint0.0383787665238965
GO:0016772transferase activity, transferring phosphorus-containing groups0.0383787665238965
GO:0048523negative regulation of cellular process0.0392138305582723
GO:0000795synaptonemal complex0.0419746203330027
GO:0006304DNA modification0.0419746203330027
GO:0004536deoxyribonuclease activity0.0419746203330027
GO:0009892negative regulation of metabolic process0.04374587211578
GO:0005815microtubule organizing center0.04374587211578
GO:0005089Rho guanyl-nucleotide exchange factor activity0.0458738727126457



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
primordium2.54e-07134


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.14.4578
MA0004.10.306101
MA0006.10.987055
MA0007.10.248215
MA0009.10.0144635
MA0014.13.44634
MA0017.10.00787192
MA0019.10.344779
MA0024.129.5357
MA0025.10.0984311
MA0027.10.981294
MA0028.112.3807
MA0029.10.0242392
MA0030.10.139197
MA0031.10.100851
MA0038.17.5524
MA0040.10.0541207
MA0041.10.974655
MA0042.10.389501
MA0043.11.58766
MA0046.10.0035688
MA0048.11.22685
MA0050.10.377136
MA0051.10.279806
MA0052.10.0180603
MA0055.10.00972619
MA0056.10
MA0057.10.0431051
MA0058.10.275139
MA0059.10.0470296
MA0060.1110.334
MA0061.10.425203
MA0063.10
MA0066.10.225508
MA0067.11.53687
MA0068.10.0698392
MA0069.10.134827
MA0070.10.394768
MA0071.10.00128812
MA0072.10.0149091
MA0073.15.5774e-08
MA0074.10.539395
MA0076.114.6667
MA0077.10.326255
MA0078.10.0046392
MA0081.10.373431
MA0083.10.0368222
MA0084.10.545815
MA0087.10.311009
MA0088.12.41356
MA0089.10
MA0090.10.184297
MA0091.10.0350207
MA0092.10.132033
MA0093.10.417265
MA0095.10
MA0098.10
MA0100.11.58736
MA0101.11.90921
MA0103.10.00167592
MA0105.10.437616
MA0106.10.412277
MA0107.11.62443
MA0108.20.100082
MA0109.10
MA0111.10.00059768
MA0113.10.218434
MA0114.10.275592
MA0115.10.0379595
MA0116.10.294364
MA0117.10.539862
MA0119.10.304648
MA0122.10.213436
MA0124.10.13616
MA0125.10.0891389
MA0130.10
MA0131.12.93372
MA0132.10
MA0133.10
MA0135.10.0497784
MA0136.10.375392
MA0139.10.82165
MA0140.10.185721
MA0141.10.000315736
MA0142.10.00347145
MA0143.10.0289478
MA0144.10.086375
MA0145.11.46837
MA0146.12.21479
MA0147.10.205281
MA0148.10.146429
MA0149.10.000272819
MA0062.218.6186
MA0035.20.00505432
MA0039.217.6204
MA0138.20.203148
MA0002.20.0027414
MA0137.20.144989
MA0104.20.317651
MA0047.20.0150574
MA0112.20.0463526
MA0065.20.00221757
MA0150.10.0095764
MA0151.10
MA0152.10.0621432
MA0153.10.0564341
MA0154.10.0261636
MA0155.10.230992
MA0156.11.15809
MA0157.10.00898293
MA0158.10
MA0159.10.0135594
MA0160.10.0220741
MA0161.10
MA0162.16.46588
MA0163.10.123559
MA0164.10.502072
MA0080.20.0266692
MA0018.22.9961
MA0099.20.00335762
MA0079.20.456274
MA0102.20.216866
MA0258.10.0159739
MA0259.10.824395
MA0442.10
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