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MCL coexpression mm9:1738: Difference between revisions

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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=}}
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Latest revision as of 17:25, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr1:120949925..120949947,-p4@Gli2
Mm9::chr1:120949949..120950000,-p1@Gli2
Mm9::chr1:120950098..120950132,-p2@Gli2
Mm9::chr1:120950197..120950215,-p5@Gli2
Mm9::chr1:120950269..120950287,-p6@Gli2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
multi-cellular organism4.04e-10333
embryo2.76e-07320
surface structure9.01e-0722


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.406907
MA0004.10.603793
MA0006.11.07705
MA0007.10.587678
MA0009.11.06266
MA0014.11.13011
MA0017.10.449113
MA0019.10.874061
MA0024.11.01759
MA0025.11.30092
MA0027.12.72141
MA0028.10.43138
MA0029.10.995171
MA0030.11.00195
MA0031.10.965177
MA0038.10.757669
MA0040.11.07552
MA0041.10.522007
MA0042.10.507715
MA0043.11.1618
MA0046.11.09955
MA0048.10.593503
MA0050.10.645342
MA0051.10.767098
MA0052.11.08379
MA0055.10.602741
MA0056.10
MA0057.10.562607
MA0058.10.50032
MA0059.10.513699
MA0060.10.330907
MA0061.13.51803
MA0063.10
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MA0089.10
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MA0100.10.695835
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MA0105.11.28296
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MA0108.20.897859
MA0109.10
MA0111.10.582193
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MA0116.10.419688
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MA0130.10
MA0131.13.33982
MA0132.10
MA0133.10
MA0135.11.19898
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MA0139.10.295945
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MA0146.10.475727
MA0147.11.75115
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MA0062.20.254018
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MA0161.10
MA0162.12.45609
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MA0080.20.455167
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MA0099.20.854449
MA0079.23.38617
MA0102.21.79669
MA0258.10.346619
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MA0442.10