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MCL coexpression mm9:417: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000468!9.71e-10!333
}}

Latest revision as of 15:16, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:58684217..58684266,-p1@Sept10
Mm9::chr11:108286556..108286618,+p1@Ccdc46
Mm9::chr13:76081260..76081398,-p1@Rhobtb3
Mm9::chr17:68353415..68353480,-p1@Arhgap28
Mm9::chr1:44175602..44175661,-p1@Kdelc1
Mm9::chr2:60801194..60801226,-p4@Rbms1
Mm9::chr2:60801253..60801308,-p2@Rbms1
Mm9::chr4:81088660..81088740,-p1@Mpdz
Mm9::chr4:84530322..84530361,+p1@Cntln
Mm9::chr6:65728988..65729056,+p1@Prdm5
Mm9::chr7:24993112..24993158,-p1@Zfp111
Mm9::chr9:55889818..55889840,+p2@Rcn2
Mm9::chr9:58402888..58402934,-p1@Cd276
Mm9::chr9:58402936..58402950,-p2@Cd276
Mm9::chr9:72510208..72510219,+p3@Nedd4
Mm9::chr9:72510227..72510275,+p1@Nedd4
Mm9::chr9:72510280..72510330,+p2@Nedd4
Mm9::chrX:53599567..53599592,+p1@Zfp449


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
multi-cellular organism9.71e-10333


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.18.28784
MA0004.10.559722
MA0006.10.289293
MA0007.10.181021
MA0009.10.5557
MA0014.12.81284
MA0017.10.0999826
MA0019.10.394308
MA0024.11.28375
MA0025.10.773017
MA0027.12.16618
MA0028.11.05513
MA0029.10.496599
MA0030.10.502474
MA0031.10.470779
MA0038.10.301835
MA0040.10.567108
MA0041.10.140298
MA0042.10.131965
MA0043.10.644695
MA0046.10.58854
MA0048.10.332197
MA0050.10.219748
MA0051.10.309072
MA0052.10.574473
MA0055.10.368697
MA0056.10
MA0057.10.506558
MA0058.10.127732
MA0059.10.13543
MA0060.10.713774
MA0061.10.476726
MA0063.10
MA0066.10.293002
MA0067.10.879099
MA0068.10.0116947
MA0069.10.574784
MA0070.10.565924
MA0071.10.219128
MA0072.10.558195
MA0073.12.14635
MA0074.10.264633
MA0076.10.357911
MA0077.10.538513
MA0078.10.336143
MA0081.10.896655
MA0083.11.55326
MA0084.11.1979
MA0087.10.604077
MA0088.11.41309
MA0089.10
MA0090.10.501796
MA0091.10.582275
MA0092.10.167962
MA0093.10.0955883
MA0095.10
MA0098.10
MA0100.10.255651
MA0101.10.857622
MA0103.10.106139
MA0105.10.453893
MA0106.10.342589
MA0107.10.686139
MA0108.20.413973
MA0109.10
MA0111.10.177475
MA0113.10.319332
MA0114.10.470969
MA0115.10.647296
MA0116.10.288992
MA0117.10.617392
MA0119.10.436476
MA0122.10.635764
MA0124.10.828115
MA0125.10.757653
MA0130.10
MA0131.10.390422
MA0132.10
MA0133.10
MA0135.10.67864
MA0136.10.280269
MA0139.10.142421
MA0140.10.255562
MA0141.10.11774
MA0142.10.457961
MA0143.10.332773
MA0144.10.219807
MA0145.10.584715
MA0146.13.20202
MA0147.10.509077
MA0148.10.203219
MA0149.10.444477
MA0062.20.760681
MA0035.20.259203
MA0039.23.76519
MA0138.20.383644
MA0002.20.338271
MA0137.20.747445
MA0104.20.662527
MA0047.20.301217
MA0112.21.15703
MA0065.21.16061
MA0150.10.180943
MA0151.10
MA0152.10.301303
MA0153.10.694211
MA0154.10.829187
MA0155.10.430598
MA0156.10.110475
MA0157.10.429861
MA0158.10
MA0159.10.534512
MA0160.10.205397
MA0161.10
MA0162.18.93144
MA0163.11.51382
MA0164.10.280556
MA0080.20.337091
MA0018.20.288261
MA0099.20.37828
MA0079.29.45899
MA0102.21.24942
MA0258.10.197969
MA0259.10.833105
MA0442.10
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