FFCP PHASE1:Hg19::chr3:39371213..39371253,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:39371213..39371253,+
|short_description=p1@CCR8
|description=CAGE_peak_1_at_CCR8_5end
|association_with_transcript=-10bp_to_ENST00000414803,ENST00000545843...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1237 | |EntrezGene=1237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1609 | |HGNC=1609 | ||
|TSSclassifier=strong | |||
|UniProt=C9JIP9,Q3KNR3 | |UniProt=C9JIP9,Q3KNR3 | ||
|association_with_transcript=-10bp_to_ENST00000414803,ENST00000545843_5end | |||
|cluster_id=chr3:39371213..39371253,+ | |||
|coexpression_cluster_id=C1865 | |||
|description=CAGE_peak_1_at_CCR8_5end | |||
|id=chr3:39371213..39371253,+ | |||
|ontology_enrichment_celltype=CL:0000084!4.28e-32!25;CL:0000827!4.28e-32!25;CL:0000791!2.38e-27!18;CL:0000789!2.38e-27!18;CL:0002420!2.38e-27!18;CL:0002419!2.38e-27!18;CL:0000790!2.38e-27!18;CL:0000838!7.36e-27!52;CL:0000542!3.64e-26!53;CL:0000051!3.64e-26!53;CL:0000625!1.76e-19!11;CL:0000738!1.86e-18!140;CL:0002087!4.29e-15!119;CL:0002031!4.48e-15!124;CL:0000037!6.82e-15!172;CL:0000566!6.82e-15!172;CL:0000988!2.65e-13!182;CL:0002032!7.82e-13!165;CL:0000837!7.82e-13!165;CL:0000624!2.06e-11!6;CL:0002322!1.81e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.27e-36;25!CL:0000791;6.56e-34;18!CL:0000789;6.56e-34;18!CL:0002419;6.56e-34;18!CL:0000625;1.61e-21;11!CL:0000624;2.39e-16;6!CL:0000542;4.42e-14;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.03e-36,25;CL:0000827,1.03e-36,25;CL:0000791,4.51e-34,18;CL:0000789,4.51e-34,18;CL:0002420,4.51e-34,18;CL:0002419,4.51e-34,18;CL:0000790,4.51e-34,18;CL:0000838,1.30e-28,52;CL:0000542,5.66e-28,53;CL:0000051,5.66e-28,53;CL:0000625,8.95e-22,11;CL:0000624,3.06e-16,6;CL:0000738,6.26e-12,136;CL:0002031,1.03e-11,120;CL:0002087,4.75e-10,115;CL:0000037,1.57e-09,168;CL:0002032,3.21e-09,161;CL:0000837,3.21e-09,161;CL:0000988,9.40e-09,177 | |||
|ontology_enrichment_development_v019=CL:0000790;6.56e-34;18!CL:0000051;4.42e-14;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!6.20e-13!15;UBERON:0000179!6.20e-13!15;UBERON:0000463!6.20e-13!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.83e-12;15!UBERON:0000179;7.83e-12;15!UBERON:0000463;7.83e-12;15!UBERON:0002370;4.75e-09;2!UBERON:0005058;4.75e-09;2!UBERON:0009113;4.75e-09;2!UBERON:0002390;2.54e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.78e-12,15;UBERON:0000179,8.78e-12,15;UBERON:0000463,8.78e-12,15;UBERON:0002370,2.19e-09,4;UBERON:0005058,2.19e-09,4;UBERON:0009113,2.19e-09,4;UBERON:0003295,2.19e-09,4;UBERON:0005562,2.19e-09,4 | |||
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| ||
|short_description=p1@CCR8 | |||
}} | }} |
Latest revision as of 04:00, 18 September 2015
Short description: | p1@CCR8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCR8_5end |
Coexpression cluster: | C1865_adult_CD4_CD8_cord_lymphangiectasia_B_xeroderma |
Association with transcript: | -10bp_to_ENST00000414803, ENST00000545843_5end |
EntrezGene: | CCR8 |
HGNC: | 1609 |
UniProt: | C9JIP9Q3KNR3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.03e-36 | 25 |
pro-T cell | 1.03e-36 | 25 |
mature alpha-beta T cell | 4.51e-34 | 18 |
alpha-beta T cell | 4.51e-34 | 18 |
immature T cell | 4.51e-34 | 18 |
mature T cell | 4.51e-34 | 18 |
immature alpha-beta T cell | 4.51e-34 | 18 |
lymphoid lineage restricted progenitor cell | 1.30e-28 | 52 |
lymphocyte | 5.66e-28 | 53 |
common lymphoid progenitor | 5.66e-28 | 53 |
CD8-positive, alpha-beta T cell | 8.95e-22 | 11 |
CD4-positive, alpha-beta T cell | 3.06e-16 | 6 |
leukocyte | 6.26e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 1.03e-11 | 120 |
nongranular leukocyte | 4.75e-10 | 115 |
hematopoietic stem cell | 1.57e-09 | 168 |
hematopoietic oligopotent progenitor cell | 3.21e-09 | 161 |
hematopoietic multipotent progenitor cell | 3.21e-09 | 161 |
hematopoietic cell | 9.40e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
blood | 8.78e-12 | 15 |
haemolymphatic fluid | 8.78e-12 | 15 |
organism substance | 8.78e-12 | 15 |
thymus | 2.19e-09 | 4 |
hemolymphoid system gland | 2.19e-09 | 4 |
thymic region | 2.19e-09 | 4 |
pharyngeal gland | 2.19e-09 | 4 |
thymus primordium | 2.19e-09 | 4 |