FFCP PHASE1:Hg19::chr4:42315859..42315864,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:42315859..42315864,+
|short_description=p@chr4:42315859..42315864,+
|description=CAGE_peak_at_chr4:42315859..42315864,+
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr4:42315859..42315864,+ | |||
|coexpression_cluster_id=C330 | |||
|description=CAGE_peak_at_chr4:42315859..42315864,+ | |||
|id=chr4:42315859..42315864,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002149;1.36e-15;6!CL:0002255;1.36e-15;6!CL:1000415;1.96e-12;2!CL:0000082;3.67e-11;19!CL:0002202;8.16e-11;9!CL:0002632;8.16e-11;9!CL:0000322;8.31e-09;3!CL:0002328;1.35e-08;3!CL:0002368;9.04e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,1.22e-15,6;CL:0002255,1.22e-15,6;CL:1000415,1.85e-12,2;CL:0000082,3.93e-11,19;CL:0002202,8.79e-11,9;CL:0002632,8.79e-11,9;CL:0000322,8.31e-09,3;CL:0002076,8.67e-09,42;CL:0002328,1.51e-08,3;CL:0002368,9.51e-08,13 | |||
|ontology_enrichment_development_v019=UBERON:0005795;9.44e-10;10 | |||
|ontology_enrichment_disease=DOID:0060085!5.70e-08!1;DOID:3165!5.70e-08!1;DOID:0060121!5.70e-08!1;DOID:2438!5.70e-08!1;DOID:4418!5.70e-08!1;DOID:630!6.10e-08!1;DOID:0050177!6.10e-08!1;DOID:0050427!6.10e-08!1;DOID:5662!9.10e-08!1 | |||
|ontology_enrichment_disease_v019=DOID:3908;8.28e-19;5!DOID:3001;1.36e-15;6!DOID:3910;1.48e-12;2!DOID:3905;6.70e-11;9!DOID:4556;1.00e-08;3!DOID:1324;6.69e-07;15 | |||
|ontology_enrichment_disease_v019_2=DOID:3908,8.66e-19,5;DOID:3001,1.22e-15,6;DOID:3910,1.48e-12,2;DOID:3905,6.87e-11,9;DOID:4556,1.04e-08,3;DOID:1324,6.79e-07,15 | |||
|ontology_enrichment_uberon=UBERON:0001874!9.72e-08!1;UBERON:0001882!1.18e-07!1;UBERON:0005403!1.18e-07!1;UBERON:0000369!2.75e-07!4;UBERON:0002435!2.75e-07!4;UBERON:0000204!2.75e-07!4;UBERON:0010082!2.75e-07!4;UBERON:0002308!6.83e-07!9;UBERON:0000125!6.83e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.48e-12;2!UBERON:0002173;1.48e-12;2!UBERON:0002186;1.48e-12;2!UBERON:0004802;3.67e-11;19!UBERON:0000115;3.67e-11;19!UBERON:0002048;9.98e-10;22!UBERON:0004807;9.98e-10;22!UBERON:0000117;9.98e-10;22!UBERON:0000171;9.98e-10;22!UBERON:0000170;9.98e-10;22!UBERON:0004821;8.31e-09;3!UBERON:0007499;8.31e-09;3!UBERON:0003215;8.31e-09;3!UBERON:0010368;8.31e-09;3!UBERON:0009911;8.31e-09;3!UBERON:0002299;8.31e-09;3!UBERON:0006524;8.31e-09;3!UBERON:0008874;8.31e-09;3!UBERON:0002169;8.31e-09;3!UBERON:0004894;8.31e-09;3!UBERON:0002110;1.00e-08;3!UBERON:0004815;1.35e-08;3!UBERON:0002031;1.35e-08;3!UBERON:0009856;6.50e-07;4!UBERON:0007196;7.52e-07;15!UBERON:0001558;7.52e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.48e-12,2;UBERON:0002173,1.48e-12,2;UBERON:0002186,1.48e-12,2;UBERON:0004802,3.93e-11,19;UBERON:0000115,3.93e-11,19;UBERON:0002048,1.06e-09,22;UBERON:0000117,1.06e-09,22;UBERON:0000171,1.06e-09,22;UBERON:0000170,1.06e-09,22;UBERON:0005597,1.06e-09,22;UBERON:0000118,1.06e-09,22;UBERON:0004821,8.31e-09,3;UBERON:0003215,8.31e-09,3;UBERON:0010368,8.31e-09,3;UBERON:0009911,8.31e-09,3;UBERON:0002299,8.31e-09,3;UBERON:0006524,8.31e-09,3;UBERON:0008874,8.31e-09,3;UBERON:0002169,8.31e-09,3;UBERON:0004894,8.31e-09,3;UBERON:0002110,9.66e-09,3;UBERON:0006242,9.66e-09,3;UBERON:0004815,1.51e-08,3;UBERON:0002031,1.51e-08,3;UBERON:0004807,9.43e-08,28;UBERON:0007196,7.86e-07,15;UBERON:0001558,7.86e-07,15 | |||
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|short_description=p@chr4:42315859..42315864,+ | |||
}} | }} |
Latest revision as of 05:18, 30 July 2015
Short description: | p@chr4:42315859..42315864, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:42315859..42315864, + |
Coexpression cluster: | C330_bronchioalveolar_oral_signet_embryonic_lymphangiectasia_testis_adult |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 1.22e-15 | 6 |
stromal cell of endometrium | 1.22e-15 | 6 |
epithelial cell of gall bladder | 1.85e-12 | 2 |
epithelial cell of lung | 3.93e-11 | 19 |
epithelial cell of tracheobronchial tree | 8.79e-11 | 9 |
epithelial cell of lower respiratory tract | 8.79e-11 | 9 |
pneumocyte | 8.31e-09 | 3 |
endo-epithelial cell | 8.67e-09 | 42 |
bronchial epithelial cell | 1.51e-08 | 3 |
respiratory epithelial cell | 9.51e-08 | 13 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.48e-12 | 2 |
alveolar duct | 1.48e-12 | 2 |
bronchiole | 1.48e-12 | 2 |
respiratory tract epithelium | 3.93e-11 | 19 |
lung epithelium | 3.93e-11 | 19 |
lung | 1.06e-09 | 22 |
respiratory tube | 1.06e-09 | 22 |
respiration organ | 1.06e-09 | 22 |
pair of lungs | 1.06e-09 | 22 |
lung primordium | 1.06e-09 | 22 |
lung bud | 1.06e-09 | 22 |
pulmonary alveolus epithelium | 8.31e-09 | 3 |
alveolus | 8.31e-09 | 3 |
pulmonary lobule | 8.31e-09 | 3 |
lobule | 8.31e-09 | 3 |
alveolus of lung | 8.31e-09 | 3 |
alveolar system | 8.31e-09 | 3 |
pulmonary acinus | 8.31e-09 | 3 |
alveolar sac | 8.31e-09 | 3 |
alveolar wall | 8.31e-09 | 3 |
gallbladder | 9.66e-09 | 3 |
gall bladder primordium | 9.66e-09 | 3 |
lower respiratory tract epithelium | 1.51e-08 | 3 |
epithelium of bronchus | 1.51e-08 | 3 |
respiratory system epithelium | 9.43e-08 | 28 |
tracheobronchial tree | 7.86e-07 | 15 |
lower respiratory tract | 7.86e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
non-small cell lung carcinoma | 8.66e-19 | 5 |
female reproductive endometrioid cancer | 1.22e-15 | 6 |
lung adenocarcinoma | 1.48e-12 | 2 |
lung carcinoma | 6.87e-11 | 9 |
lung large cell carcinoma | 1.04e-08 | 3 |
lung cancer | 6.79e-07 | 15 |