FFCP PHASE1:Hg19::chr5:38557343..38557361,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:38557343..38557361,-
|short_description=p4@LIFR
|description=CAGE_peak_4_at_LIFR_5end
|association_with_transcript=205bp_to_ENST00000511561_5end
|EntrezGe...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3977 | |EntrezGene=3977 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6597 | |HGNC=6597 | ||
|TSSclassifier=strong | |||
|UniProt=D6RJ94 | |UniProt=D6RJ94 | ||
|association_with_transcript=205bp_to_ENST00000511561_5end | |||
|cluster_id=chr5:38557343..38557361,- | |||
|coexpression_cluster_id=C2670 | |||
|description=CAGE_peak_4_at_LIFR_5end | |||
|id=chr5:38557343..38557361,- | |||
|ontology_enrichment_celltype=CL:0002139!2.13e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0002618;2.44e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002618,2.68e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004872;1.38e-08;7!UBERON:0006603;3.89e-07;65 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.51e-61!115;UBERON:0001049!1.09e-21!57;UBERON:0005068!1.09e-21!57;UBERON:0006241!1.09e-21!57;UBERON:0007135!1.09e-21!57;UBERON:0003080!3.87e-18!42;UBERON:0000477!7.97e-18!286;UBERON:0004111!1.71e-17!241;UBERON:0002780!3.79e-17!41;UBERON:0001890!3.79e-17!41;UBERON:0006240!3.79e-17!41;UBERON:0002616!6.98e-17!59;UBERON:0001017!8.90e-17!82;UBERON:0001893!1.12e-16!34;UBERON:0002020!1.43e-16!34;UBERON:0003528!1.43e-16!34;UBERON:0005743!2.39e-16!86;UBERON:0002791!6.42e-16!33;UBERON:0001869!2.20e-15!32;UBERON:0003075!4.49e-15!86;UBERON:0007284!4.49e-15!86;UBERON:0000073!7.32e-15!94;UBERON:0001016!7.32e-15!94;UBERON:0000025!8.75e-15!194;UBERON:0002346!1.10e-14!90;UBERON:0000955!5.10e-14!69;UBERON:0006238!5.10e-14!69;UBERON:0001950!9.74e-12!20;UBERON:0002619!1.28e-11!22;UBERON:0000956!1.18e-10!25;UBERON:0000203!1.18e-10!25;UBERON:0003056!2.32e-10!61;UBERON:0000468!3.76e-09!659;UBERON:0000153!2.28e-08!129;UBERON:0007811!2.28e-08!129;UBERON:0000922!4.81e-08!612;UBERON:0002420!5.10e-08!9;UBERON:0007245!5.10e-08!9;UBERON:0010009!5.10e-08!9;UBERON:0010011!5.10e-08!9;UBERON:0000454!5.10e-08!9;UBERON:0000119!5.27e-08!312;UBERON:0000481!5.43e-08!347;UBERON:0000467!5.49e-08!625;UBERON:0000483!6.17e-08!309;UBERON:0000480!6.62e-08!626;UBERON:0002308!8.73e-08!9;UBERON:0000125!8.73e-08!9;UBERON:0001871!1.86e-07!7;UBERON:0000033!4.36e-07!123;UBERON:0002050!4.51e-07!605;UBERON:0005423!4.51e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;8.57e-10;114!UBERON:0006947;3.20e-09;3!UBERON:0004054;3.20e-09;3!UBERON:0003135;2.96e-08;11!UBERON:0005904;5.60e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.55e-37,114;UBERON:0006947,3.26e-09,3;UBERON:0004054,3.26e-09,3;UBERON:0003135,2.92e-08,11;UBERON:0005904,5.67e-07,4 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0.487932798790507,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,6.35248516163906,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0.56530794192401,0,1.10047216776027,0.626984899610432,1.8089173141853,2.49036383880697,0.33472061276467,0.805658634218294,1.52054421143703,0.24406205754817,0.367663080345869,0,1.42879565254528,1.12264686313085,1.46394924628319,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,4.13552934676983,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,1.27047312111232,0,0,0.335032530668698,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0.647747748306418,0,0,0,0,0,0,0,0,0,0,0,2.88514832613622,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,3.57746442951761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.2112933893737,0,0,0,0,0,0,0.994147647766298,0.703347082052564,0,0,0.422250816255987,2.78947183551498,10.4987887901836,0,0,0,0,0.0898683511473268,0,0,3.74844941420348,0,0,0,0.278304294485554,0,0,0,11.5999932069567,0,0,0,0,0.291604613383254,0,1.77148277162768,0.60298219312704,0,0.221158519862449,0.591095237907095,0.658156191461918,0,0,26.2400381497948,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.97630965539252,4.24596309616028,0,0,0,0,0.539209063845416,3.21031058919516,0.234264445725339,0,0,0,13.4158696968793,4.83962864194656,0.91821828489147,0.821425535170343,0.300646838828985,0,0,0,0,0,0,0,0,0,0,8.91106008034354,0,0.0967563312890851,0.146178634172371,0.0821154570532092,4.26751672549045,0,1.35588444468319,0,0,0.886351143382302,0.195551382734803,0,8.96502577905281,0,0,0.114536596165916,0,0,0,0,0,0.418411385249333,0,0,0.600420288709789,0.410716136675979,0,0,0,1.11712960508902,2.97908551215189,0,0.399358000997982,1.71690419254628,1.78537165953498,1.61240333968143,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0.544813624446302,0,0,0,0,0,0.485996453264197,0,4.01909107225911,1.10154635083496,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,1.13312091520126,2.4913879725274,0,0.517131825446202,0.52893040697076,0,0,10.5719538442018,36.3141944780228,14.912605992499,1.9846640872478,0,0,0,1.08803560673895,2.0055191521816,3.06345576763462,1.96723578425883,0,0,0.244052529803926,1.001527445652,0,0.665574309221114,1.05563885000352,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0.147855149989634,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0.308801447160972,0,0,0.192914038270915,0,0,0,0,0.138258436151731,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0.323474434190045,0.157265941855896,0,0,1.2754495206101,0,0,0,0,0,0,0,0.513833800771676,0,0.319267718114302,1.23069818544453,1.00828678488687,0.553258019713743,0.807378228159255,0,0,0,0,0,0,0,0.198916222116275,3.38446477571658,0,2.34454203369928,0,0.163771917510097,0,0.87798860003913,0,0.413373593002368,0.697573912132975,0.546974809018219,3.28954660114309,16.3749688868467,0,0.127762427639595,0,0.672567444437648,0,0.91064876540519,3.28198769601764,0,0,0.747667062745149,0.526182188502793,0,0,5.88698196378855,0.314231179832004,0,0,0,0,2.00134323694638,0,0,0,0,0,0,0,0.860454717640555,0,0,14.3951597064916,0,0,0,0,0,0,6.47428837187895,1.95059333026869,1.1598144313382,1.94284397223656,0.233939463462106,0,0,0.11294608203896,0.109940516745429,0.452888530700021,3.55001127296545,0.437119121007915,0,5.63841140033983,0,0.196308467114945,0.594092800654172,3.3812458206672,0,0.281951753939561,1.22469987149797,0,0,0,0,6.57302749421866,2.2936464170227,0.430018749454354,0,0.475940431336403,0,3.1741610430924,0,0,0,0.126166424835079,0,0.126698501011437,0.101988829741982,0,0,0,3.48582011803901,1.33982065078089,0,0.310298987585686,5.5440835294255,1.90451545170992,0.710478008196067,0.620747142958579,0,1.65482611523229,1.21270313374932,2.39488422686657,0.684466602170562,1.0776328482334,1.79305513481691,1.99596213927608,0,0,0,0.0898252021065869,0,44.9848514592949,6.91723503136755,7.32332451604064,5.03184483977566,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0.487932798790507,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,6.35248516163906,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0.56530794192401,0,1.10047216776027,0.626984899610432,1.8089173141853,2.49036383880697,0.33472061276467,0.805658634218294,1.52054421143703,0.24406205754817,0.367663080345869,0,1.42879565254528,1.12264686313085,1.46394924628319,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,4.13552934676983,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,1.27047312111232,0,0,0.335032530668698,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0.647747748306418,0,0,0,0,0,0,0,0,0,0,0,2.88514832613622,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,3.57746442951761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.2112933893737,0,0,0,0,0,0,0.994147647766298,0.703347082052564,0,0,0.422250816255987,2.78947183551498,10.4987887901836,0,0,0,0,0.0898683511473268,0,0,3.74844941420348,0,0,0,0.278304294485554,0,0,0,11.5999932069567,0,0,0,0,0.291604613383254,0,1.77148277162768,0.60298219312704,0,0.221158519862449,0.591095237907095,0.658156191461918,0,0,26.2400381497948,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.97630965539252,4.24596309616028,0,0,0,0,0.539209063845416,3.21031058919516,0.234264445725339,0,0,0,13.4158696968793,4.83962864194656,0.91821828489147,0.821425535170343,0.300646838828985,0,0,0,0,0,0,0,0,0,0,8.91106008034354,0,0.0967563312890851,0.146178634172371,0.0821154570532092,4.26751672549045,0,1.35588444468319,0,0,0.886351143382302,0.195551382734803,0,8.96502577905281,0,0,0.114536596165916,0,0,0,0,0,0.418411385249333,0,0,0.600420288709789,0.410716136675979,0,0,0,1.11712960508902,2.97908551215189,0,0.399358000997982,1.71690419254628,1.78537165953498,1.61240333968143,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0.544813624446302,0,0,0,0,0,0.485996453264197,0,4.01909107225911,1.10154635083496,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,1.13312091520126,2.4913879725274,0,0.517131825446202,0.52893040697076,0,0,10.5719538442018,36.3141944780228,14.912605992499,1.9846640872478,0,0,0,1.08803560673895,2.0055191521816,3.06345576763462,1.96723578425883,0,0,0.244052529803926,1.001527445652,0,0.665574309221114,1.05563885000352,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0.147855149989634,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0.308801447160972,0,0,0.192914038270915,0,0,0,0,0.138258436151731,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0.323474434190045,0.157265941855896,0,0,1.2754495206101,0,0,0,0,0,0,0,0.513833800771676,0,0.319267718114302,1.23069818544453,1.00828678488687,0.553258019713743,0.807378228159255,0,0,0,0,0,0,0,0.198916222116275,3.38446477571658,0,2.34454203369928,0,0.163771917510097,0,0.87798860003913,0,0.413373593002368,0.697573912132975,0.546974809018219,3.28954660114309,16.3749688868467,0,0.127762427639595,0,0.672567444437648,0,0.91064876540519,3.28198769601764,0,0,0.747667062745149,0.526182188502793,0,0,5.88698196378855,0.314231179832004,0,0,0,0,2.00134323694638,0,0,0,0,0,0,0,0.860454717640555,0,0,14.3951597064916,0,0,0,0,0,0,6.47428837187895,1.95059333026869,1.1598144313382,1.94284397223656,0.233939463462106,0,0,0.11294608203896,0.109940516745429,0.452888530700021,3.55001127296545,0.437119121007915,0,5.63841140033983,0,0.196308467114945,0.594092800654172,3.3812458206672,0,0.281951753939561,1.22469987149797,0,0,0,0,6.57302749421866,2.2936464170227,0.430018749454354,0,0.475940431336403,0,3.1741610430924,0,0,0,0.126166424835079,0,0.126698501011437,0.101988829741982,0,0,0,3.48582011803901,1.33982065078089,0,0.310298987585686,5.5440835294255,1.90451545170992,0.710478008196067,0.620747142958579,0,1.65482611523229,1.21270313374932,2.39488422686657,0.684466602170562,1.0776328482334,1.79305513481691,1.99596213927608,0,0,0,0.0898252021065869,0,44.9848514592949,6.91723503136755,7.32332451604064,5.03184483977566,0 | ||
|short_description=p4@LIFR | |||
}} | }} |
Latest revision as of 20:24, 17 September 2015
Short description: | p4@LIFR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LIFR_5end |
Coexpression cluster: | C2670_uterus_lung_cervix_adipose_penis_ductus_seminal |
Association with transcript: | 205bp_to_ENST00000511561_5end |
EntrezGene: | LIFR |
HGNC: | 6597 |
UniProt: | D6RJ94 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of umbilical vein | 2.68e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.55e-37 | 114 |
male genital duct | 3.26e-09 | 3 |
internal male genitalia | 3.26e-09 | 3 |
male reproductive organ | 2.92e-08 | 11 |
duct of male reproductive system | 5.67e-07 | 4 |