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MCL coexpression mm9:65: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000014!1.90e-09!5;UBERON:0001003!1.90e-09!5;UBERON:0002097!1.90e-09!5;UBERON:0002199!1.90e-09!5;UBERON:0007029!1.90e-09!5;UBERON:0007376!1.90e-09!5;UBERON:0002416!1.90e-09!5;UBERON:0007383!1.90e-09!5;UBERON:0003102!1.78e-08!22
|tfbs_overrepresentation_for_novel_motifs=0.134103,1.70574,0.4668,0.239864,0.0975838,0.197314,0.244596,0.428291,1.71658,0.112415,0.0907494,0.605695,1.21185,0.0262961,0.635063,0,0.0444276,0.159192,0.306352,2.11708,0.287205,0.987922,0.00291209,0.0941362,0.0990476,0.0157542,1.64605,0.170342,0.238338,0.986786,0.557028,0.893702,0.203829,0.222915,0.639229,1.14754,0.087493,0.309525,0.671502,0.931657,0.229937,0.0945796,1.19274,0.265197,1.15604,0.0133403,0.312831,0.0788071,0.658975,0.528386,0.480346,0.189388,1.9169,0.101877,0.507295,0.0292573,2.28185,0.0658581,0.795731,0.188184,0.353427,0.0617083,2.18144,0.165479,0.214963,0.571338,0.0614202,0.230388,0.0292443,0.145905,0.142439,0.124817,0.000720547,0.135857,0.0939286,0.636306,2.52854,0.433206,0.319,0.162721,0.0490208,0.123252,0.466957,0.305361,0.347524,1.1511e-06,2.14514,0.308304,0.324669,0.341604,0.29107,0.181163,0.242717,0.788817,0.630124,0.776193,0.129805,0.041735,0.105101,0.788208,0.36424,0.619014,0.0915495,0.182015,0.036967,0.0939783,0.27731,0.0743625,0.122255,0.107033,0.451939,0.714436,0.310369,0.48282,0.620896,0.36695,0.0702393,0.608731,0.107844,0.340459,0.326535,0.245037,0.359057,0.430405,0.359756,0.326261,0.265108,0.110369,1.25414,0.464429,0.0821184,0.218868,0.428788,0.0141828,0.097634,5.8676,0.152266,0.755211,0.0783388,0.64236,0.318474,0.225592,0.745488,0.239289,0.171405,0.152897,0.32034,0.60766,0.157623,0.623946,1.03751,2.68073e-05,0.102839,0.348604,0.330857,1.4482,0.191208,0.0879702,0.190447,0.0601987,0.279415,0.0665848,0.5233,0.244687,0.89065,0.202878,0.90402,0.598013,0.531998
}}

Latest revision as of 14:37, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:12546728..12546774,-p@chr10:12546728..12546774
-
Mm9::chr10:43724304..43724316,-p4@Aim1
Mm9::chr10:43742074..43742086,-p@chr10:43742074..43742086
-
Mm9::chr10:6511636..6511664,-p@chr10:6511636..6511664
-
Mm9::chr10:85474578..85474641,-p1@Bpifc
Mm9::chr11:100054567..100054570,-p1@Krt9
Mm9::chr11:100258384..100258423,-p@chr11:100258384..100258423
-
Mm9::chr11:101031641..101031648,-p6@Plekhh3
Mm9::chr11:119860422..119860438,+p@chr11:119860422..119860438
+
Mm9::chr11:121380594..121380609,-p2@Zfp750
Mm9::chr11:121380611..121380625,-p3@Zfp750
Mm9::chr11:121380640..121380655,-p1@Zfp750
Mm9::chr11:21016856..21016868,+p@chr11:21016856..21016868
+
Mm9::chr11:36120925..36120928,-p@chr11:36120925..36120928
-
Mm9::chr11:36246605..36246616,-p@chr11:36246605..36246616
-
Mm9::chr11:45979830..45979886,-p1@Nipal4
Mm9::chr11:68702080..68702090,+p2@Rnf222
Mm9::chr11:68702096..68702107,+p3@Rnf222
Mm9::chr11:77651549..77651577,+p5@Myo18a
Mm9::chr11:77651584..77651608,+p7@Myo18a
Mm9::chr11:77651621..77651628,+p18@Myo18a
Mm9::chr11:77651629..77651650,+p6@Myo18a
Mm9::chr11:78200071..78200100,-p1@Foxn1
Mm9::chr11:78200195..78200211,-p2@Foxn1
Mm9::chr11:83880565..83880597,-p1@Dusp14
Mm9::chr11:99354426..99354443,-p1@Krt23
Mm9::chr11:99997253..99997268,-p1@Krt15
Mm9::chr12:113969330..113969333,+p@chr12:113969330..113969333
+
Mm9::chr12:113969420..113969429,+p@chr12:113969420..113969429
+
Mm9::chr12:25257114..25257131,+p4@Grhl1
Mm9::chr12:71773416..71773431,+p@chr12:71773416..71773431
+
Mm9::chr12:80090170..80090174,-p@chr12:80090170..80090174
-
Mm9::chr12:81928594..81928606,+p@chr12:81928594..81928606
+
Mm9::chr13:39994656..39994668,-p@chr13:39994656..39994668
-
Mm9::chr13:40833605..40833615,-p@chr13:40833605..40833615
-
Mm9::chr14:55081633..55081636,-p@chr14:55081633..55081636
-
Mm9::chr14:57751371..57751388,-p8@Gjb6
Mm9::chr14:70856799..70856821,+p6@Phyhip
Mm9::chr14:70954349..70954367,+p@chr14:70954349..70954367
+
Mm9::chr15:101200587..101200600,-p1@Krt80
Mm9::chr15:102087880..102087927,-p2@Rarg
Mm9::chr15:102552581..102552593,-p3@Calcoco1
Mm9::chr15:12423244..12423288,-p@chr15:12423244..12423288
-
Mm9::chr15:34608930..34608963,-p6@Nipal2
Mm9::chr15:75844748..75844776,-p4@Fam83h
Mm9::chr15:76064231..76064246,-p3@Parp10
Mm9::chr15:79285958..79285990,-p@chr15:79285958..79285990
-
Mm9::chr15:97561726..97561738,-p4@Endou
Mm9::chr15:97561758..97561777,-p2@Endou
Mm9::chr15:97561812..97561824,-p5@Endou
Mm9::chr16:20677687..20677707,+p@chr16:20677687..20677707
+
Mm9::chr16:20677726..20677745,+p@chr16:20677726..20677745
+
Mm9::chr16:25801993..25802014,+p1@Trp63
Mm9::chr16:25825019..25825027,+p@chr16:25825019..25825027
+
Mm9::chr16:25842644..25842647,+p@chr16:25842644..25842647
+
Mm9::chr16:5132581..5132606,-p2@Ppl
Mm9::chr16:56831885..56831903,-p4@Tmem45a
Mm9::chr16:56831922..56831932,-p9@Tmem45a
Mm9::chr17:24580022..24580035,-p2@Dnase1l2
Mm9::chr17:24580038..24580054,-p1@Dnase1l2
Mm9::chr17:28995456..28995498,+p2@Pnpla1
Mm9::chr17:34068016..34068041,-p@chr17:34068016..34068041
-
Mm9::chr17:35198436..35198442,-p@chr17:35198436..35198442
-
Mm9::chr17:35204262..35204277,+p1@Ly6g6c
Mm9::chr17:35205639..35205657,+p@chr17:35205639..35205657
+
Mm9::chr17:35205767..35205776,+p@chr17:35205767..35205776
+
Mm9::chr17:35205849..35205867,+p@chr17:35205849..35205867
+
Mm9::chr17:35214005..35214018,+p2@Ly6g6e
Mm9::chr17:37079855..37079869,+p1@Rnf39
Mm9::chr17:42829160..42829187,-p2@Gpr115
Mm9::chr17:42829251..42829271,-p3@Gpr115
Mm9::chr17:42878973..42878976,-p5@Gpr111
Mm9::chr17:42879001..42879034,-p2@Gpr111
Mm9::chr17:42879074..42879086,-p3@Gpr111
Mm9::chr17:42879094..42879111,-p4@Gpr111
Mm9::chr17:42879116..42879138,-p1@Gpr111
Mm9::chr17:56693805..56693849,-p@chr17:56693805..56693849
-
Mm9::chr18:15222586..15222623,-p2@Kctd1
Mm9::chr18:20160504..20160515,-p2@Dsc3
Mm9::chr18:20160518..20160564,-p1@Dsc3
Mm9::chr18:20160594..20160605,-p3@Dsc3
Mm9::chr18:20160840..20160862,-p4@Dsc3
Mm9::chr18:20160873..20160884,-p5@Dsc3
Mm9::chr18:20264483..20264486,-p@chr18:20264483..20264486
-
Mm9::chr18:20273111..20273120,-p8@Dsc1
Mm9::chr18:20273133..20273138,-p9@Dsc1
Mm9::chr18:36690686..36690702,+p@chr18:36690686..36690702
+
Mm9::chr18:38129624..38129635,-p2@Fchsd1
Mm9::chr18:38363438..38363449,-p@chr18:38363438..38363449
-
Mm9::chr18:38363452..38363482,-p@chr18:38363452..38363482
-
Mm9::chr18:38363487..38363490,-p@chr18:38363487..38363490
-
Mm9::chr18:38363496..38363505,-p@chr18:38363496..38363505
-
Mm9::chr18:42213381..42213392,+p5@Sh3rf2
Mm9::chr19:34175445..34175473,+p1@Lipm
Mm9::chr19:37428110..37428144,-p@chr19:37428110..37428144
-
Mm9::chr19:4721184..4721195,+p@chr19:4721184..4721195
+
Mm9::chr19:4721215..4721225,+p@chr19:4721215..4721225
+
Mm9::chr19:4721276..4721283,+p@chr19:4721276..4721283
+
Mm9::chr19:47448153..47448169,-p@chr19:47448153..47448169
-
Mm9::chr19:47490637..47490652,-p@chr19:47490637..47490652
-
Mm9::chr19:5704437..5704468,+p1@Kcnk7
Mm9::chr1:108757721..108757774,+p1@Serpinb5
Mm9::chr1:109407993..109408008,+p1@Serpinb2
Mm9::chr1:109408104..109408109,+p4@Serpinb2
Mm9::chr1:173300476..173300490,+p2@Pvrl4
Mm9::chr1:173300516..173300539,+p1@Pvrl4
Mm9::chr1:195336396..195336410,-p1@Mir205
Mm9::chr1:34217099..34217116,+p2@Dst
Mm9::chr1:74838324..74838342,+p2@Wnt10a
Mm9::chr1:92941063..92941075,+p@chr1:92941063..92941075
+
Mm9::chr2:119000219..119000263,+p1@Gm14137
Mm9::chr2:119859165..119859183,+p3@Jmjd7
p3@Pla2g4b
Mm9::chr2:132771205..132771306,-p1@Fermt1
Mm9::chr2:145676855..145676860,+p@chr2:145676855..145676860
+
Mm9::chr2:158338483..158338507,+p1@Arhgap40
Mm9::chr2:158338541..158338548,+p@chr2:158338541..158338548
+
Mm9::chr2:16278208..16278242,+p7@Plxdc2
Mm9::chr2:16278252..16278297,+p5@Plxdc2
Mm9::chr2:16278303..16278331,+p11@Plxdc2
Mm9::chr2:16278346..16278369,+p10@Plxdc2
Mm9::chr2:29922215..29922227,+p8@Set
Mm9::chr2:30412102..30412137,-p@chr2:30412102..30412137
-
Mm9::chr2:5604761..5604764,+p@chr2:5604761..5604764
+
Mm9::chr2:59617756..59617778,+p2@Tanc1
Mm9::chr2:91805878..91805895,-p7@Dgkz
Mm9::chr3:135101244..135101267,+p2@Gm4596
p4@Ube2d3
Mm9::chr3:144761988..144762039,-p1@Clca5
Mm9::chr3:148740053..148740064,-p@chr3:148740053..148740064
-
Mm9::chr3:148740078..148740092,-p@chr3:148740078..148740092
-
Mm9::chr3:148740143..148740157,-p@chr3:148740143..148740157
-
Mm9::chr3:92409863..92409866,-p@chr3:92409863..92409866
-
Mm9::chr3:95055026..95055040,-p2@Bnipl
Mm9::chr3:95055042..95055066,-p1@Bnipl
Mm9::chr3:95110716..95110732,-p2@Anxa9
Mm9::chr3:96474221..96474269,+p1@Ankrd35
Mm9::chr4:116794920..116794958,-p1@ENSMUST00000153924
Mm9::chr4:153455655..153455695,-p@chr4:153455655..153455695
-
Mm9::chr4:154430893..154430936,-p@chr4:154430893..154430936
-
Mm9::chr4:4004657..4004687,-p1@Sdr16c6
Mm9::chr4:57351889..57351919,-p@chr4:57351889..57351919
-
Mm9::chr5:115140983..115141008,-p2@Gltp
Mm9::chr5:23897782..23897825,-p1@Atg9b
Mm9::chr5:23897830..23897849,-p2@Atg9b
Mm9::chr5:63156857..63156871,-p8@Arap2
Mm9::chr5:87061442..87061456,-p2@Tmprss11f
Mm9::chr5:87061485..87061496,-p3@Tmprss11f
Mm9::chr5:93285457..93285469,+p@chr5:93285457..93285469
+
Mm9::chr6:119338982..119338986,-p5@Adipor2
Mm9::chr6:51382822..51382833,+p2@Nfe2l3
Mm9::chr6:67485777..67485796,-p1@Tacstd2
Mm9::chr6:87433375..87433386,-p@chr6:87433375..87433386
-
Mm9::chr7:103670852..103670867,+p15@Odz4
Mm9::chr7:114828996..114829062,+p@chr7:114828996..114829062
+
Mm9::chr7:119382041..119382052,+p@chr7:119382041..119382052
+
Mm9::chr7:130109150..130109161,+p8@Rbbp6
Mm9::chr7:133944039..133944044,-p24@Aldoa
p26@Aldoart1
Mm9::chr7:134623366..134623379,+p@chr7:134623366..134623379
+
Mm9::chr7:13512690..13512699,+p3@2310014L17Rik
Mm9::chr7:137718553..137718566,+p@chr7:137718553..137718566
+
Mm9::chr7:148264069..148264080,+p9@Pkp3
Mm9::chr7:148264087..148264106,+p5@Pkp3
Mm9::chr7:148264165..148264213,+p3@Pkp3
Mm9::chr7:148265024..148265066,+p6@Pkp3
Mm9::chr7:19946556..19946611,+p1@Ppp1r13l
Mm9::chr7:19985208..19985258,-p1@Klc3
Mm9::chr7:20103065..20103079,+p@chr7:20103065..20103079
+
Mm9::chr7:20473257..20473294,-p1@Ceacam19
Mm9::chr7:20473295..20473311,-p2@Ceacam19
Mm9::chr7:25134207..25134220,+p1@Lypd5
Mm9::chr7:25395767..25395795,+p@chr7:25395767..25395795
+
Mm9::chr7:25421498..25421539,+p3@Lypd3
Mm9::chr7:29414940..29414948,+p@chr7:29414940..29414948
+
Mm9::chr7:29649464..29649479,+p1@Lgals7
Mm9::chr7:31536545..31536562,+p1@Sbsn
Mm9::chr7:51066808..51066824,+p1@Klk7
Mm9::chr7:52972711..52972723,-p@chr7:52972711..52972723
-
Mm9::chr7:73888534..73888560,+p@chr7:73888534..73888560
+
Mm9::chr7:89137554..89137565,-p2@Bnc1
Mm9::chr8:14881568..14881575,+p10@Cln8
Mm9::chr8:14881619..14881626,+p9@Cln8
Mm9::chr8:14881629..14881657,+p5@Cln8
Mm9::chr8:95425268..95425279,+p4@Capns2
Mm9::chr8:95425286..95425310,+p1@Capns2
Mm9::chr8:95425318..95425336,+p3@Capns2
Mm9::chr9:106584530..106584545,-p@chr9:106584530..106584545
-
Mm9::chr9:106584567..106584580,-p@chr9:106584567..106584580
-
Mm9::chr9:106584691..106584695,-p@chr9:106584691..106584695
-
Mm9::chr9:14467432..14467450,-p@chr9:14467432..14467450
-
Mm9::chr9:14467458..14467520,-p@chr9:14467458..14467520
-
Mm9::chr9:31720817..31720829,-p5@Barx2
Mm9::chr9:31720843..31720888,-p1@Barx2
Mm9::chr9:31721051..31721068,-p3@Barx2
Mm9::chr9:31923564..31923581,+p6@Arhgap32
Mm9::chr9:31923625..31923634,+p11@Arhgap32
Mm9::chr9:43118870..43118889,+p1@Trim29
Mm9::chr9:43118890..43118901,+p2@Trim29
Mm9::chr9:43119189..43119211,+p@chr9:43119189..43119211
+
Mm9::chr9:43119231..43119242,+p@chr9:43119231..43119242
+
Mm9::chr9:43128599..43128619,+p@chr9:43128599..43128619
+
Mm9::chr9:43876232..43876248,+p@chr9:43876232..43876248
+
Mm9::chr9:53094155..53094159,+p@chr9:53094155..53094159
+
Mm9::chr9:61221312..61221328,+p6@Tle3
Mm9::chr9:78463644..78463688,+p2@Cd109
Mm9::chr9:83672696..83672700,-p@chr9:83672696..83672700
-
Mm9::chr9:83699766..83699777,-p3@Elovl4
Mm9::chr9:83699848..83699867,-p1@Elovl4
Mm9::chrX:109811959..109811982,-p@chrX:109811959..109811982
-
Mm9::chrX:109812023..109812094,-p@chrX:109812023..109812094
-
Mm9::chrX:109812251..109812266,-p1@Pof1b
Mm9::chrX:130697015..130697034,-p1@Xkrx
Mm9::chrX:130697044..130697051,-p2@Xkrx
Mm9::chrX:141783475..141783487,-p2@Lhfpl1
Mm9::chrX:160577302..160577329,+p3@Ace2
Mm9::chrX:45562047..45562058,-p2@Zdhhc9
Mm9::chrX:97970129..97970146,+p10@Dlg3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030057desmosome0.0166135092742933
GO:0014704intercalated disc0.0166135092742933
GO:0045111intermediate filament cytoskeleton0.0492527974732983



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
zone of skin1.90e-095
skin epidermis1.90e-095
skin of body1.90e-095
integument1.90e-095
surface1.90e-095
outer epithelium1.90e-095
integumental system1.90e-095
enveloping layer of ectoderm1.90e-095
surface structure1.78e-0822


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.159406
MA0004.10.0632615
MA0006.10.0132233
MA0007.10.508331
MA0009.10.702383
MA0014.10.000285492
MA0017.10.0284562
MA0019.10.553558
MA0024.10.0927168
MA0025.10.0506692
MA0027.11.10516
MA0028.10.000119751
MA0029.10.0779769
MA0030.10.180957
MA0031.10.261727
MA0038.10.144471
MA0040.10.138477
MA0041.10.000280484
MA0042.10.00437289
MA0043.10.227517
MA0046.10.0124947
MA0048.11.81537
MA0050.10.0349479
MA0051.10.0891696
MA0052.10.504703
MA0055.16.41189
MA0056.10
MA0057.10.524818
MA0058.10.0820394
MA0059.10.0111811
MA0060.10.000180921
MA0061.10.0348115
MA0063.10
MA0066.10.625062
MA0067.10.0883641
MA0068.10.00232631
MA0069.10.296499
MA0070.10.137298
MA0071.10.262027
MA0072.10.711197
MA0073.10.0195424
MA0074.10.0835301
MA0076.10.000523883
MA0077.10.111554
MA0078.10.217485
MA0081.10.100661
MA0083.10.0205266
MA0084.10.26546
MA0087.10.0679522
MA0088.10.369251
MA0089.10
MA0090.10.838015
MA0091.10.28204
MA0092.10.679693
MA0093.10.0613022
MA0095.10
MA0098.10
MA0100.10.748322
MA0101.10.0781927
MA0103.13.49561
MA0105.10.0500904
MA0106.11.47157
MA0107.10.0183957
MA0108.20.636113
MA0109.10
MA0111.11.35707
MA0113.10.285454
MA0114.10.140696
MA0115.10.0210985
MA0116.10.235787
MA0117.10.624874
MA0119.11.20623
MA0122.10.0855756
MA0124.10.242482
MA0125.11.08081
MA0130.10
MA0131.10.127287
MA0132.10
MA0133.10
MA0135.10.0269864
MA0136.10.0264973
MA0139.10.124454
MA0140.10.300198
MA0141.10.0356019
MA0142.10.0162432
MA0143.10.122172
MA0144.10.837792
MA0145.12.15336
MA0146.10.469265
MA0147.10.00664655
MA0148.10.202886
MA0149.10.00319468
MA0062.22.83193e-06
MA0035.20.774637
MA0039.20.252511
MA0138.21.52555
MA0002.20.923799
MA0137.20.330239
MA0104.20.0278921
MA0047.20.233137
MA0112.20.327528
MA0065.21.12572
MA0150.11.89914
MA0151.10
MA0152.10.4981
MA0153.10.0302681
MA0154.11.59825
MA0155.10.539376
MA0156.10.0446889
MA0157.10.319068
MA0158.10
MA0159.10.184963
MA0160.10.0484625
MA0161.10
MA0162.10.000672712
MA0163.10.0829408
MA0164.10.554801
MA0080.20.0100593
MA0018.20.0307469
MA0099.25.87338
MA0079.20.00461235
MA0102.20.814968
MA0258.10.234399
MA0259.10.0236702
MA0442.10
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