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MCL coexpression mm9:157: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.868816920085224,1.13641327512142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001911!1.87e-86!2;UBERON:0000076!1.87e-86!2;UBERON:0005333!1.87e-86!2;UBERON:0008425!1.87e-86!2;UBERON:0005311!1.87e-86!2;UBERON:0003100!5.67e-17!11;UBERON:0005085!1.42e-14!13;UBERON:0005153!1.86e-11!17;UBERON:0005157!6.23e-10!20;UBERON:0002365!3.41e-08!25;UBERON:0002330!3.41e-08!25
|tfbs_overrepresentation_for_novel_motifs=0.0265469,0.0264141,0.0620464,0.427125,0.262554,0.465587,0.0223436,0.564127,0.332855,0.0257344,0.183241,0.223835,0.0354787,0.105367,0.189915,0,0.0832663,0.371646,0.0522323,0.211151,0.194179,0.905791,0.024532,1.26957,0.151998,0.0305979,0.923802,0.153308,0.14378,0.149896,0.138183,0.406652,0.0728613,0.443472,0.467421,0.201839,0.00215622,0.0869521,0.731325,0.278521,0.251665,0.143633,0.124278,2.116,0.0138715,0.106553,0.199666,0.339513,0.0970901,0.260234,0.263821,0.0371257,0.0817954,0.21085,0.221972,0.026164,0.282065,0.0180184,0.181986,0.0257441,0.119754,0.0396014,0.704826,0.9146,0.0285319,0.296652,0.316113,0.600406,1.23429,0.474674,0.0504205,0.601944,0.00027868,0.243973,0.00550882,0.0811801,0.744631,0.188842,0.111478,0.745792,0.323079,0.0905112,2.42407,0.0308288,0.171876,5.79904e-07,0.000564712,0.0306666,0.204417,0.745901,0.368575,0.174769,1.35434,0.813691,0.0011717,0.597294,1.36967,0.843527,0.199912,0.657276,0.66424,0.406286,0.19997,0.559894,0.946145,0.0105747,0.101237,0.166549,0.210829,0.00186868,0.307378,0.201073,0.104748,0.0732082,0.37402,1.52316,0.0198356,0.437005,0.0837984,0.0602624,1.28102,0.064314,0.300889,0.0502909,0.416638,0.113236,0.0239011,0.13286,0.845567,0.0940737,1.05727,0.232298,0.797282,0.531597,0.390862,0.0151272,0.54593,0.145139,0.35286,1.09291,0.716863,0.855832,0.581975,0.420398,0.256272,0.292772,0.0551687,1.05479,0.193962,0.0137514,0.0159501,7.22896e-08,0.211841,0.00416407,0.28651,2.07697,0.0373853,0.0567169,0.0258172,0.342468,0.360116,0.983886,0.113449,0.0736866,0.538665,0.511714,0.0626493,0.221721,0.0829183
}}

Latest revision as of 14:47, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:100720767..100720797,+p4@Stat5a
Mm9::chr11:109583488..109583500,-p5@Fam20a
Mm9::chr11:109583528..109583603,-p1@Fam20a
Mm9::chr11:109583662..109583674,-p7@Fam20a
Mm9::chr11:109632807..109632846,-p@chr11:109632807..109632846
-
Mm9::chr11:109658625..109658647,-p@chr11:109658625..109658647
-
Mm9::chr11:35582296..35582300,+p@chr11:35582296..35582300
+
Mm9::chr11:48162734..48162736,-p@chr11:48162734..48162736
-
Mm9::chr11:5420655..5420659,+p3@Xbp1
Mm9::chr11:6535571..6535575,-p@chr11:6535571..6535575
-
Mm9::chr11:6535581..6535586,-p@chr11:6535581..6535586
-
Mm9::chr11:70159204..70159225,-p2@Alox15
Mm9::chr11:83524726..83524734,+p@chr11:83524726..83524734
+
Mm9::chr11:83524738..83524748,+p@chr11:83524738..83524748
+
Mm9::chr12:53708625..53708630,+p@chr12:53708625..53708630
+
Mm9::chr13:103685076..103685111,-p@chr13:103685076..103685111
-
Mm9::chr13:23557731..23557739,-p4@Btn1a1
Mm9::chr13:72770062..72770073,+p@chr13:72770062..72770073
+
Mm9::chr14:32247461..32247472,-p@chr14:32247461..32247472
-
Mm9::chr14:32247505..32247512,-p@chr14:32247505..32247512
-
Mm9::chr15:102487541..102487549,+p@chr15:102487541..102487549
+
Mm9::chr15:103393256..103393264,-p@chr15:103393256..103393264
-
Mm9::chr15:103393267..103393277,-p@chr15:103393267..103393277
-
Mm9::chr15:103393297..103393307,-p@chr15:103393297..103393307
-
Mm9::chr15:50141424..50141428,-p@chr15:50141424..50141428
-
Mm9::chr15:50714356..50714368,-p14@Trps1
Mm9::chr15:79730670..79730679,+p@chr15:79730670..79730679
+
Mm9::chr15:81082279..81082303,-p1@uc007wwj.1
Mm9::chr19:10260637..10260652,+p@chr19:10260637..10260652
+
Mm9::chr19:44484947..44484956,-p@chr19:44484947..44484956
-
Mm9::chr19:44484965..44484981,-p@chr19:44484965..44484981
-
Mm9::chr19:46415608..46415612,+p2@Tmem180
Mm9::chr19:56051165..56051186,+p@chr19:56051165..56051186
+
Mm9::chr19:56109584..56109587,+p1@uc008hyp.1
Mm9::chr1:139647999..139648007,-p@chr1:139647999..139648007
-
Mm9::chr1:40636991..40636997,-p@chr1:40636991..40636997
-
Mm9::chr2:109975213..109975217,+p@chr2:109975213..109975217
+
Mm9::chr2:110571873..110571881,+p@chr2:110571873..110571881
+
Mm9::chr2:3283846..3283859,-p1@Olah
Mm9::chr2:34922534..34922550,-p@chr2:34922534..34922550
-
Mm9::chr2:93360875..93360880,-p@chr2:93360875..93360880
-
Mm9::chr3:102564818..102564829,+p@chr3:102564818..102564829
+
Mm9::chr3:19544359..19544364,-p@chr3:19544359..19544364
-
Mm9::chr4:118634204..118634217,+p3@Lao1
Mm9::chr4:118634296..118634303,+p6@Lao1
Mm9::chr4:120339219..120339228,+p2@Cited4
Mm9::chr5:139230762..139230773,+p8@Fam20c
Mm9::chr5:88121763..88121767,-p@chr5:88121763..88121767
-
Mm9::chr5:88121850..88121857,-p@chr5:88121850..88121857
-
Mm9::chr5:88121858..88121866,-p@chr5:88121858..88121866
-
Mm9::chr5:88217723..88217733,+p@chr5:88217723..88217733
+
Mm9::chr5:88358803..88358820,+p@chr5:88358803..88358820
+
Mm9::chr5:88361418..88361423,+p@chr5:88361418..88361423
+
Mm9::chr6:51296751..51296773,-p@chr6:51296751..51296773
-
Mm9::chr6:85391699..85391710,+p3@Smyd5
Mm9::chr7:112548479..112548496,-p3@Fam160a2
Mm9::chr7:136575945..136575947,+p@chr7:136575945..136575947
+
Mm9::chr7:136575981..136575984,+p@chr7:136575981..136575984
+
Mm9::chr8:47396093..47396097,+p@chr8:47396093..47396097
+
Mm9::chr9:103129266..103129312,-p@chr9:103129266..103129312
-
Mm9::chr9:103130750..103130767,-p12@Trf
Mm9::chr9:103130780..103130787,-p20@Trf
Mm9::chr9:45715668..45715672,-p@chr9:45715668..45715672
-
Mm9::chr9:67138095..67138099,-p@chr9:67138095..67138099
-
Mm9::chr9:77686637..77686644,+p@chr9:77686637..77686644
+
Mm9::chr9:77686655..77686662,+p@chr9:77686655..77686662
+
Mm9::chr9:77686674..77686686,+p@chr9:77686674..77686686
+
Mm9::chr9:77686699..77686701,+p@chr9:77686699..77686701
+
Mm9::chrX:138898857..138898863,-p@chrX:138898857..138898863
-
Mm9::chrX:45388019..45388035,-p1@Apln


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
mammary gland1.87e-862
external ectoderm1.87e-862
mammary bud1.87e-862
mammary ridge1.87e-862
mammary placode1.87e-862
female organism5.67e-1711
ectodermal placode1.42e-1413
epithelial bud1.86e-1117
epithelial fold6.23e-1020
exocrine gland3.41e-0825
exocrine system3.41e-0825


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000255529
MA0004.10.0413992
MA0006.10.0452286
MA0007.11.562
MA0009.10.868078
MA0014.14.1802e-07
MA0017.10.237903
MA0019.10.840459
MA0024.10.384267
MA0025.10.290379
MA0027.11.58064
MA0028.10.000669024
MA0029.10.356898
MA0030.10.113716
MA0031.10.321618
MA0038.10.547681
MA0040.10.896708
MA0041.11.1646
MA0042.10.570468
MA0043.10.199351
MA0046.10.163356
MA0048.10.0030536
MA0050.10.157523
MA0051.10.132308
MA0052.10.4697
MA0055.15.85396e-05
MA0056.10
MA0057.10.0425376
MA0058.10.0136757
MA0059.10.0529238
MA0060.10.027791
MA0061.10.0958859
MA0063.10
MA0066.10.281432
MA0067.10.373034
MA0068.10.0131276
MA0069.10.154951
MA0070.10.893728
MA0071.10.156589
MA0072.10.445394
MA0073.11.44553e-13
MA0074.10.0923804
MA0076.10.0013273
MA0077.11.33724
MA0078.11.44424
MA0081.10.953194
MA0083.10.198862
MA0084.10.648071
MA0087.10.514789
MA0088.10.0851712
MA0089.10
MA0090.10.545879
MA0091.10.268395
MA0092.11.0952
MA0093.10.00582743
MA0095.10
MA0098.10
MA0100.10.413192
MA0101.10.25409
MA0103.11.09593
MA0105.10.0487053
MA0106.11.48038
MA0107.10.140833
MA0108.20.905802
MA0109.10
MA0111.10.0338705
MA0113.10.943095
MA0114.10.164056
MA0115.10.20108
MA0116.10.180614
MA0117.10.181524
MA0119.11.17636
MA0122.10.193454
MA0124.10.332586
MA0125.10.278915
MA0130.10
MA0131.10.0610115
MA0132.10
MA0133.10
MA0135.10.222323
MA0136.10.105718
MA0139.10.01404
MA0140.10.0850147
MA0141.11.5536
MA0142.10.0910287
MA0143.10.642602
MA0144.12.12991
MA0145.10.627655
MA0146.10.00609153
MA0147.10.0585925
MA0148.11.38156
MA0149.10.141878
MA0062.26.0087e-05
MA0035.20.221117
MA0039.21.59948e-06
MA0138.20.0583125
MA0002.20.41183
MA0137.21.52979
MA0104.20.020776
MA0047.21.69144
MA0112.20.0258614
MA0065.20.0453691
MA0150.10.882577
MA0151.10
MA0152.10.124887
MA0153.10.233143
MA0154.10.509923
MA0155.10.0123285
MA0156.10.00897387
MA0157.10.268209
MA0158.10
MA0159.10.0680834
MA0160.10.279376
MA0161.10
MA0162.13.13499e-05
MA0163.10.00501094
MA0164.10.25865
MA0080.20.142171
MA0018.20.0268732
MA0099.20.205815
MA0079.24.66493e-13
MA0102.20.695093
MA0258.10.651878
MA0259.10.00669671
MA0442.10
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