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MCL coexpression mm9:216: Difference between revisions

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{{MCL_coexpression_mm9
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|tfbs_overrepresentation_for_novel_motifs=0.319079,0.303305,0.275027,0.395369,0.249064,0.18995,0.0866288,0.31767,1.02279,0.305917,0.24062,0.0813393,0.318423,0.307698,0.0504518,0,0.199777,0.639733,0.621451,0.834137,0.0863461,0.171053,0.306569,0.246011,0.12016,0.105276,0.797573,0.464123,0.174991,0.531854,0.436305,0.268728,0.229211,0.196357,0.0507029,0.378817,0.00622713,0.273563,0.507479,0.0169371,0.421801,0.0551024,0.213682,0.491845,0.142647,0.0426776,0.151073,0.0641975,0.554541,0.17895,0.188647,0.118842,0.127835,0.37598,0.389905,0.0955072,0.373354,0.0759108,0.358557,0.0945544,0.254508,0.123779,0.233189,0.181599,0.100788,1.12745,0.503044,0.81757,0.700302,0.681742,0.0993148,0.737272,0.00147344,0.417048,0.00069509,0.178414,0.899805,0.144582,0.680133,0.224029,1.006,0.211086,0.389282,1.19115,0.325875,0.000620214,0.84792,0.240122,0.153906,0.971002,0.563419,0.329674,0.277951,0.45197,0.024231,0.260554,0.47974,0.766348,0.460868,0.414605,0.0988705,0.268528,1.69407,0.553557,0.188358,0.0549469,0.227389,0.224798,0.0928076,0.0197211,0.129872,0.363613,0.702251,0.246517,0.569603,2.04636,0.0139051,0.711161,0.200617,0.0951065,1.08041,0.168774,0.345209,0.442945,0.617553,0.245094,0.302577,0.273057,0.501748,0.710165,0.9213,0.168224,0.476627,0.102,0.588644,0.361277,1.35656,0.449217,0.54549,1.3282,0.940622,1.26455,0.361045,0.757844,0.542134,0.202965,0.464996,1.28935,1.36842,0.252571,0.247836,1.06175e-05,0.377227,0.449147,1.65859,0.443629,0.119365,0.153349,0.314818,0.143238,0.553783,1.56397,0.686803,0.127937,0.537143,1.62623,0.00612713,0.979968,0.00399767
}}

Latest revision as of 14:54, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:13011844..13011877,-p@chr10:13011844..13011877
-
Mm9::chr11:104438279..104438292,+p6@Myl4
Mm9::chr11:11736262..11736279,-p5@Ddc
Mm9::chr11:67090708..67090725,+p1@Myh8
Mm9::chr11:67092328..67092352,+p4@Myh8
Mm9::chr11:67092533..67092550,-p@chr11:67092533..67092550
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Mm9::chr11:67111245..67111253,-p@chr11:67111245..67111253
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Mm9::chr11:67111998..67112035,-p@chr11:67111998..67112035
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Mm9::chr11:67112824..67112862,-p@chr11:67112824..67112862
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Mm9::chr11:67115496..67115541,-p@chr11:67115496..67115541
-
Mm9::chr11:67122071..67122098,+p@chr11:67122071..67122098
+
Mm9::chr11:88705748..88705768,-p@chr11:88705748..88705768
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Mm9::chr12:110777975..110777979,-p@chr12:110777975..110777979
-
Mm9::chr12:110835303..110835307,-p@chr12:110835303..110835307
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Mm9::chr12:110836746..110836751,-p@chr12:110836746..110836751
-
Mm9::chr12:110838538..110838558,-p1@Rtl1
Mm9::chr14:121558875..121558906,-p@chr14:121558875..121558906
-
Mm9::chr15:10882103..10882119,+p1@C1qtnf3
Mm9::chr17:46736704..46736710,-p@chr17:46736704..46736710
-
Mm9::chr17:85487883..85487917,-p@chr17:85487883..85487917
-
Mm9::chr18:9282752..9282764,-p2@Gjd4
Mm9::chr1:195024144..195024225,-p2@Traf3ip3
Mm9::chr1:20616901..20616923,-p@chr1:20616901..20616923
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Mm9::chr1:20660147..20660162,+p@chr1:20660147..20660162
+
Mm9::chr1:89087245..89087258,+p2@Chrnd
Mm9::chr3:53507328..53507383,+p@chr3:53507328..53507383
+
Mm9::chr4:148919211..148919245,+p6@Ctnnbip1
Mm9::chr4:45653649..45653662,+p1@uc008ssv.1
Mm9::chr5:109133585..109133615,+p@chr5:109133585..109133615
+
Mm9::chr6:4573902..4573916,+p@chr6:4573902..4573916
+
Mm9::chr6:4573955..4573973,+p@chr6:4573955..4573973
+
Mm9::chr8:119946988..119947025,-p@chr8:119946988..119947025
-
Mm9::chr9:44807527..44807544,+p@chr9:44807527..44807544
+
Mm9::chrX:131219747..131219797,+p@chrX:131219747..131219797
+
Mm9::chrX:132758574..132758592,+p1@Tceal7
Mm9::chrX:132760082..132760094,+p@chrX:132760082..132760094
+
Mm9::chrX:35669325..35669342,+p2@Atp1b4
Mm9::chrX:35669354..35669370,+p1@Atp1b4
Mm9::chrX:46823709..46823725,+p2@Arhgap36
Mm9::chrX:46823732..46823756,+p1@Arhgap36


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00048705
MA0004.10.39628
MA0006.10.273955
MA0007.10.0416604
MA0009.10.28789
MA0014.10.00362951
MA0017.10.166299
MA0019.10.497064
MA0024.10.256408
MA0025.11.19128
MA0027.11.82121
MA0028.10.0108633
MA0029.10.677139
MA0030.10.687705
MA0031.10.221516
MA0038.10.342732
MA0040.10.29711
MA0041.10.108468
MA0042.10.0227283
MA0043.10.361422
MA0046.10.314603
MA0048.10.420965
MA0050.11.24028
MA0051.10.718661
MA0052.12.26514
MA0055.11.16194
MA0056.10
MA0057.10.147954
MA0058.10.232592
MA0059.10.251616
MA0060.10.13124
MA0061.10.0267149
MA0063.10
MA0066.10.0999207
MA0067.10.568484
MA0068.10.380756
MA0069.10.303349
MA0070.10.803064
MA0071.10.470038
MA0072.10.289901
MA0073.10.397567
MA0074.10.283849
MA0076.10.0161593
MA0077.10.752964
MA0078.10.126717
MA0081.10.289057
MA0083.10.360799
MA0084.10.868194
MA0087.10.32742
MA0088.10.112068
MA0089.10
MA0090.10.333785
MA0091.11.59818
MA0092.10.605194
MA0093.10.313732
MA0095.10
MA0098.10
MA0100.10.269978
MA0101.10.109484
MA0103.10.35556
MA0105.10.00429974
MA0106.10.130893
MA0107.10.0653973
MA0108.21.01769
MA0109.10
MA0111.10.156488
MA0113.10.116032
MA0114.10.31847
MA0115.10.363622
MA0116.10.273529
MA0117.10.33849
MA0119.10.497695
MA0122.10.353887
MA0124.10.522168
MA0125.11.16201
MA0130.10
MA0131.10.163115
MA0132.10
MA0133.10
MA0135.10.390343
MA0136.10.0924202
MA0139.10.0362598
MA0140.10.269842
MA0141.10.40191
MA0142.11.14485
MA0143.10.393238
MA0144.10.522773
MA0145.10.214797
MA0146.10.0300681
MA0147.10.201588
MA0148.10.42726
MA0149.10.0271745
MA0062.20.0048548
MA0035.20.275446
MA0039.20.000821799
MA0138.20.478788
MA0002.20.183966
MA0137.20.394957
MA0104.20.0467404
MA0047.20.104862
MA0112.20.448125
MA0065.20.450787
MA0150.10.161196
MA0151.10
MA0152.10.696832
MA0153.10.403751
MA0154.10.0491733
MA0155.10.0263581
MA0156.10.0160124
MA0157.10.191171
MA0158.10
MA0159.10.389602
MA0160.10.195348
MA0161.10
MA0162.10.00030983
MA0163.10.0104971
MA0164.11.57578
MA0080.20.0659289
MA0018.20.660314
MA0099.20.154738
MA0079.22.63317e-05
MA0102.20.917775
MA0258.10.28312
MA0259.10.083201
MA0442.10
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