NonredundantMotifs:42: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=1523
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ZN333_f1 /UNIPROBE:Sox14_primary;SCI09~Sox30_secondary;SCI09~Tbp_primary;SCI09~Tcf7_s...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;0.173553910821485;0.244647010878487;0.248735494710349;0.333063583589678!2;0.317106561976575;0.259459487959638;0.118295437263868;0.305138512799919!3;0.240662422013045;0.181192078172451;0.247535043791699;0.330610456022805!4;0.431219460594741;0.156611422412954;0.14143976187804;0.270729355114265!5;0.95892528072766;0.011289722798393;0.0068819333328407;0.0229030631411059!6;0.049110505356461;0.0110650040306441;0.0128430981214808;0.926981392491414!7;0.0721299121616168;0.0131398227509503;0.00611517503470117;0.908615090052732!8;0.917455623783146;0.00388578046279708;0.0698604904232183;0.00879810533083873!9;0.00879810533083873;0.0698604904232183;0.00388578046279708;0.917455623783146!10;0.908615090052732;0.00611517503470117;0.0131398227509503;0.0721299121616168!11;0.926981392491414;0.0128430981214808;0.0110650040306441;0.049110505356461!12;0.0229030631411059;0.0068819333328407;0.011289722798393;0.95892528072766!13;0.422656110852828;0.136247615558468;0.266000819494699;0.175095454094004!14;0.336160531477187;0.121946469404951;0.177187958109979;0.364705041007882!15;0.247357321323532;0.0971533147963961;0.24892864037951;0.406560723500562!16;0.24636873790792;0.321670331426985;0.222124023554256;0.209836907110839 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ZN333_f1 /UNIPROBE: | |entrez_gene_id=6736 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:ZN333_f1 /UNIPROBE:Tbp_primary;SCI09~Sox21_primary;SCI09~Sox30_secondary;SCI09~Sox14_primary;SCI09~Tcf7_secondary;SCI09~Sry_primary;SCI09~Cutl1_3494.2;CELL08 | ||
|name=non-redundant42 | |||
|representative_motif_db=UNIPROBE | |representative_motif_db=UNIPROBE | ||
|representative_motif_id= | |representative_motif_id=Sry_primary | ||
|representative_motif_name= | |representative_motif_name=SCI09 | ||
|score=0. | |score=0.042468679857074566 | ||
|uniprot_entry_name= | |uniprot_entry_name=SRY_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant42
- db :UNIPROBE
- Id :Sry_primary
- name :SCI09
- score :0.042468679857074566
- External refs:
- Internal refs:
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Sub Motif Members
