NonredundantMotifs:93: Difference between revisions
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|entrez_gene_id=
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HMGA1,2.p2 /UNIPROBE:Mafk_secondary;SCI09
|name=known93
|representative_motif_db=SW...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=PO;A;C;G;T!1;235.847782;71.173251;26.046643;132.90618!2;142.284081;108.258384;97.81561;117.615781!3;53.792235;10.29034;72.089642;329.801639!4;24.973972;7.917489;246.146631;186.935764!5;58.205123;184.451872;144.137375;79.1794859999999!6;374.096017;35.382561;15.635845;40.859433!7;271.248331;0.905912;39.036638;154.782975!8;71.053665;4.338248;8.722454;381.859489!9;0;16.488609;0;449.485247!10;26.340859;2.425357;4.649761;432.557879!11;36.747302;176.065303;29.468136;223.693115!12;26.732693;195.16723;0.938174;243.135759!13;30.274585;97.0904880000001;0.338008;338.270775!14;106.640964;71.919639;118.468048;168.945205!15;181.560828;19.573;67.598113;197.241915 | ||
|entrez_gene_id=HMGA1,2 | |||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HMGA1,2.p2 /UNIPROBE:Mafk_secondary;SCI09 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:HMGA1,2.p2 /UNIPROBE:Mafk_secondary;SCI09 | ||
|name= | |name=non-redundant93 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=HMGA1,2.p2 | |representative_motif_id=HMGA1,2.p2 | ||
|representative_motif_name= | |representative_motif_name=HMGA1,2 | ||
|score=0.21790111807962842 | |score=0.21790111807962842 | ||
|uniprot_entry_name= | |uniprot_entry_name=HMGA1,2 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant93
- db :SWISSREGULON
- Id :HMGA1,2.p2
- name :HMGA1,2
- score :0.21790111807962842
- External refs:
- Internal refs:
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Sub Motif Members
