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NonredundantMotifs:10: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;131.518756;410.442575;333.596143000001;20.312073!2;87.985988;445.171425;129.15353;233.558604!3;220.416276;21.176247;636.079004;18.19802!4;1.720719;881.617294;3.461966;9.069568!5;859.513512999999;0.880742;32.912279;2.563013!6;0;868.487859;6.06783;21.313858!7;2.61893;848.468946999999;44.78167;0!8;0;1.677913;0;894.191633999999!9;2.543581;1.621881;886.549804999999;5.15428!10;18.09673;206.853461;386.397542;284.521814!11;147.679327;130.283902;476.031602;141.874716!12;126.949105;512.472689;196.801828;59.645925
|PWM=PO;A;C;G;T!1;131.518756;410.442575;333.596143000001;20.312073!2;87.985988;445.171425;129.15353;233.558604!3;220.416276;21.176247;636.079004;18.19802!4;1.720719;881.617294;3.461966;9.069568!5;859.513512999999;0.880742;32.912279;2.563013!6;0;868.487859;6.06783;21.313858!7;2.61893;848.468946999999;44.78167;0!8;0;1.677913;0;894.191633999999!9;2.543581;1.621881;886.549804999999;5.15428!10;18.09673;206.853461;386.397542;284.521814!11;147.679327;130.283902;476.031602;141.874716!12;126.949105;512.472689;196.801828;59.645925
|entrez_gene_id=
|entrez_gene_id=6935
|motif_cluster_2013_march_motif_members= /SWISSREGULON:MYOD1.p2~ZEB1.p2~ZNF238.p2~TAL1_TCF(3,4,12).p2~SNAI1..3.p2~LMO2.p2 /JASPAR:MA0091.1;TAL1::TCF3 /HOMER:NEUROD1_Islet-NeuroD1-ChIP-Seq(GSE30298)~OLIG2_Neuron-Olig2-ChIP-Seq(GSE30882)~TAL1_motifA;HPC7-Scl-ChIP-Seq~ATOH1_Cerebellum-Atoh1-ChIP-Seq /UNIPROBE:Tcfe2a_primary;SCI09~Myf6_primary;SCI09~Tcfe2a_secondary;SCI09 /HOCOMOCO:SNAI2_f1~NDF1_f1~ITF2_f1~ZN238_f1~TFE2_f2~TWST1_f1~TAL1_f2~SNAI1_f1~TAL1_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:TFE2_f2~NDF1_f1~TAL1_f1~ITF2_f1~SNAI2_f1~TWST1_f1~SNAI1_f1~ZN238_f1~TAL1_f2 /HOMER:ATOH1_Cerebellum-Atoh1-ChIP-Seq~TAL1_motifA;HPC7-Scl-ChIP-Seq~NEUROD1_Islet-NeuroD1-ChIP-Seq(GSE30298)~OLIG2_Neuron-Olig2-ChIP-Seq(GSE30882) /JASPAR:MA0091.1;TAL1::TCF3 /SWISSREGULON:ZNF238.p2~SNAI1..3.p2~MYOD1.p2~ZEB1.p2~TAL1_TCF(3,4,12).p2~LMO2.p2 /UNIPROBE:Tcfe2a_primary;SCI09~Tcfe2a_secondary;SCI09~Myf6_primary;SCI09
|name=known10
|name=non-redundant10
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=ZEB1.p2
|representative_motif_id=ZEB1.p2
|representative_motif_name=  
|representative_motif_name=ZEB1
|score=0.8111344501518296
|score=0.8111344501518296
|uniprot_entry_name=
|uniprot_entry_name=ZEB1
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 15:42, 31 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant10
  • db :SWISSREGULON
  • Id :ZEB1.p2
  • name :ZEB1
  • score :0.8111344501518296
  • External refs:
EntrezGene:6935
UniProt:6935

  • Internal refs:
EntrezGene:6935


Motif matrix
POACGT
1131.518756410.442575333.59614300000120.312073
287.985988445.171425129.15353233.558604
3220.41627621.176247636.07900418.19802
41.720719881.6172943.4619669.069568
5859.5135129999990.88074232.9122792.563013
60868.4878596.0678321.313858
72.61893848.46894699999944.781670
801.6779130894.191633999999
92.5435811.621881886.5498049999995.15428
1018.09673206.853461386.397542284.521814
11147.679327130.283902476.031602141.874716
12126.949105512.472689196.80182859.645925

Sub Motif Members