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Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant123
  • db :SWISSREGULON
  • Id :MSX1,2.p2
  • name :MSX1,2
  • score :0.047883748605647904
  • External refs:
EntrezGene:MSX1
UniProt:MSX1

EntrezGene:2
UniProt:2

  • Internal refs:
EntrezGene:MSX1

EntrezGene:2


Motif matrix
P0ACGT
11.34430925.3563560.1329013.664845
28.2417926.8411293.2416812.17381
31.8615855.69330218.7439014.199623
40.70032.2522220.2221327.323759
524.7482320.144432.0953333.510416
623.7609771.92712304.810311
79.2276493.0498673.30227914.918616
800.478109030.020302
91.7721440.16909827.5796290.97754

Sub Motif Members