Personal tools

NonredundantMotifs:89: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
m (Autoedit moved page MotifCluster2013March:Non redundant89 to NonredundantMotifs:Motif89 without leaving a redirect: NSchange)
m (Autoedit moved page NonredundantMotifs:Motif89 to NonredundantMotifs:89 without leaving a redirect: NSchange)
 
(No difference)

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant89
  • db :SWISSREGULON
  • Id :YY1.p2
  • name :YY1
  • score :0.08529706897542651
  • External refs:
EntrezGene:YY1
UniProt:YY1

  • Internal refs:
EntrezGene:YY1


Motif matrix
POACGT
1218.127580907.91216938.579205
201155.694950.5536048.3704
301163.36605701.252897
41162.48435202.1346020
50001164.618954
651.253761848.797314000001132.994365131.573514

Sub Motif Members