FFCP PHASE1:Hg19::chr6:133035185..133035201,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:133035185..133035201,-
|short_description=p1@VNN1
|description=CAGE_peak_1_at_VNN1_5end
|association_with_transcript=0bp_to_ENST00000367928,NM_004666,uc003...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8876 | |EntrezGene=8876 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12705 | |HGNC=12705 | ||
|TSSclassifier=strong | |||
|UniProt=O95497 | |UniProt=O95497 | ||
|association_with_transcript=0bp_to_ENST00000367928,NM_004666,uc003qdo.2_5end | |||
|cluster_id=chr6:133035185..133035201,- | |||
|coexpression_cluster_id=C211 | |||
|description=CAGE_peak_1_at_VNN1_5end | |||
|id=chr6:133035185..133035201,- | |||
|ontology_enrichment_celltype=CL:0000766!3.71e-40!76;CL:0002009!3.26e-38!65;CL:0002057!1.28e-37!42;CL:0002194!4.31e-37!63;CL:0000576!4.31e-37!63;CL:0000040!4.31e-37!63;CL:0000559!4.31e-37!63;CL:0000557!7.27e-34!71;CL:0000860!9.29e-34!45;CL:0000839!5.67e-33!70;CL:0000763!1.22e-30!112;CL:0000049!1.22e-30!112;CL:0000738!1.54e-30!140;CL:0002087!9.76e-28!119;CL:0000037!1.37e-27!172;CL:0000566!1.37e-27!172;CL:0002032!6.48e-26!165;CL:0000837!6.48e-26!165;CL:0002031!1.23e-24!124;CL:0000988!4.52e-24!182;CL:0002393!1.09e-08!9;CL:0002397!1.09e-08!9;CL:0000094!6.07e-08!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.26e-39;33!CL:0002057;1.26e-39;33!CL:0000473;8.27e-39;39!CL:0000234;8.27e-39;39!CL:0000576;1.04e-34;48!CL:0000766;7.97e-27;69!CL:0000763;1.04e-14;100!CL:0002087;1.31e-12;104!CL:0000094;6.55e-11;8!CL:0000738;1.01e-08;136!CL:0002393;2.87e-08;6!CL:0002397;2.87e-08;6!CL:0000235;5.17e-08;6!CL:0000081;2.08e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.22e-61,48;CL:0000234,2.22e-61,48;CL:0000766,4.23e-57,72;CL:0002009,1.30e-54,61;CL:0000860,1.51e-54,42;CL:0002057,1.51e-54,42;CL:0002194,5.67e-53,59;CL:0000576,5.67e-53,59;CL:0000040,5.67e-53,59;CL:0000559,5.67e-53,59;CL:0000557,4.81e-48,67;CL:0000839,1.97e-45,66;CL:0000763,2.34e-43,108;CL:0000049,2.34e-43,108;CL:0000738,1.35e-37,136;CL:0000037,6.27e-34,168;CL:0002087,1.20e-33,115;CL:0002032,4.58e-32,161;CL:0000837,4.58e-32,161;CL:0000988,6.91e-31,177;CL:0002031,9.15e-29,120;CL:0002393,5.26e-12,9;CL:0002397,5.26e-12,9;CL:0000094,6.43e-11,8;CL:0000235,5.05e-08,6;CL:0000134,1.33e-07,354;CL:0000081,2.06e-07,11;CL:0002320,4.68e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;5.79e-39;42!CL:0000049;4.13e-13;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.14e-36!102;UBERON:0003061!3.14e-36!102;UBERON:0002193!2.54e-32!112;UBERON:0002371!7.46e-30!80;UBERON:0007023!1.95e-29!115;UBERON:0002405!2.09e-29!115;UBERON:0001474!4.84e-26!86;UBERON:0004765!1.92e-19!101;UBERON:0001434!1.92e-19!101;UBERON:0003081!2.06e-09!216;UBERON:0002204!1.61e-07!167;UBERON:0001049!3.06e-07!57;UBERON:0005068!3.06e-07!57;UBERON:0006241!3.06e-07!57;UBERON:0007135!3.06e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.55e-08;15!UBERON:0000179;2.55e-08;15!UBERON:0000463;2.55e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.37e-51,98;UBERON:0003061,2.37e-51,98;UBERON:0002193,4.78e-46,108;UBERON:0002371,1.41e-43,76;UBERON:0001474,5.46e-39,82;UBERON:0002405,3.82e-38,93;UBERON:0004765,7.65e-34,90;UBERON:0001434,1.34e-28,100;UBERON:0003081,5.16e-18,203;UBERON:0002204,1.92e-13,167;UBERON:0000926,8.03e-10,315;UBERON:0004120,8.03e-10,315;UBERON:0006603,8.03e-10,315;UBERON:0007023,7.17e-09,114;UBERON:0000178,2.50e-08,15;UBERON:0000179,2.50e-08,15;UBERON:0000463,2.50e-08,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.86728553697808,34.5446458287491,13.1593704818665,0,0,0,0.0774672005803016,0,1.46800219667424,12.1878989877013,14.0381113229099,6.07630438004385,83.2965564172518,84.8601404969726,129.560510519996,88.5475274167549,12.0920301980419,18.9215567726497,119.933383043333,9.86802931252382,35.925939023832,253.456997635815,43.8034808164762,112.329059197078,200.297240507975,26.4648720269369,35.2108865145289,95.6271084876432,10.3704337021981,30.1129469156413,136.207332105052,18.9348125974895,34.5242047931482,212.754088620432,56.8471424221651,67.3435105841657,136.108132916806,10.2129340444405,24.912889959823,238.434983328649,52.6697747604403,111.63506617843,161.036267700476,23.9380463391917,54.4315306398321,74.9956266407393,55.9149308908065,17.4016675771952,148.947764900253,111.431254488398,48.217676009124,74.3883261164659,65.4435867985006,22.46769091305,1.75996244461323,0.546138611262131,0.889509253863555,2.13365111283254,0.400395987036012,0.574752439954483,0,0,1.1384259382189,0,0,0,1.68152568894461,2.37045676297569,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,2.10805166708882,1.15187950038977,2.49861453104692,2.13099526839615,0,0,0,0,0,0,0,0.722878304769133,0,0.434539556882471,0,0,0,0,0,8.64461898284903,0,0,0,0.174129737299267,0.664789802594326,0.715471872916026,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.4492584410489,34.9002237733493,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0.747243402759005,0,0,0,0,0,0.309977343527296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0.18611685633159,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.38697193978896,0.643240938192885,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,406.883661778077,227.033087052532,64.9868897349544,0,1.47586126251736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0797652739329,14.5082644386327,33.88790500183,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,10.9461402577071,10.5473989200747,33.7334303172851,0,0,0,3.32997005335432,0,1.07436577943937,0,0.788123040807709,0,0.256686072559497,0,0,0.773288812777695,0.335032530668698,0,54.6775127481443,50.8574480646842,59.6758339347891,0,0,0,0,0,0,0,0,0,0,0,0,0.434418072340414,0,0,7.85718499266972,7.76571122947021,11.9534864739858,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0.177561725313127,0,0.519254429183621,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0.219259876645935,0,0,0,0,27.7180321332373,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32687795048244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,25.7012576120607,0,0,0,0,5.58192370155386,8.41100927856613,3.98753031021914,24.5378728721523,22.2135627466545,9.72709966789076,9.72056587028607,0.79312517629427,0,0,0,2.60124445176006,0.144269212976445,0,0,0,42.322686799253,0,12.0110117901586,0,2.05411211129873,0.156679895773023,2.50634477090067,7.78742177887375,0,2.01799707191048,1.27753871307098,0,0,0,0.333698283423817,0.19538809540204,0,0,0.270455678475983,0,0,24.702551333885,8.64398257704175,0,0,0,0,0.890894042497916,0,0,0.562677665642051,0,0,0,1.39473591775749,2.21027132424918,0,0,3.44637455290994,3.42143546427988,0,0,0,2.07151151837561,23.948309234694,0,0,0.649376687132959,1.99613798001194,0,0,0,0,0,0,0,0,0,1.77148277162768,0.482385754501632,0,0.110579259931225,0.886642856860642,0.219385397153973,0,0,1.76985594558733,25.8648466772693,0,0,0,1.27600463892768,2.01514705484097,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,603.634420170786,0,0,0,0,0.606610196826093,0.802577647298789,0.234264445725339,1.82454789215666,0,0,0,33.8774004936259,0,3.22251556105289,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,1.26085721434945,0,2.03382666702479,0,0.19871461170299,0.126621591911757,0,0.160317640503067,35.6466501214719,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0.684526894459965,0,0,0,0,0.458320848023367,0,1.39775300349294,0.858452096273142,5.57928643604681,2.28423806454869,0,0,0.551482276150566,0.412079291905832,0.404421263125109,0.196854963029498,0,1.59045937961861,0.544813624446302,0,0,0,2.92466059016951,1.5476039091159,0.364497339948148,0,27.9760260912154,1.67854682031994,0,0,0,0.714695326373367,2.64836788146173,0,0,0,0.653174720218818,0,0,0,0,425.587686601151,58.3030311213774,0.387848869084652,0.52893040697076,0,0,47.7339734177595,8.17462386518263,6.62782488555513,11.4118185016749,0,0,0,0,0,0.612691153526923,0.327872630709804,0,0,0.976210119215705,1.502291168478,3.44045517414043,0.665574309221114,0.620964029413834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,11.3055538026711,0,0,0.426766918776564,25.3156020101399,0,0.184105950251841,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0.319267718114302,0.41023272848151,0,0.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| ||
|short_description=p1@VNN1 | |||
}} | }} |
Latest revision as of 20:01, 24 September 2015
Short description: | p1@VNN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VNN1_5end |
Coexpression cluster: | C211_small_Hepatocyte_liver_colon_temporal_duodenum_kidney |
Association with transcript: | 0bp_to_ENST00000367928, NM_004666, uc003qdo.2_5end |
EntrezGene: | VNN1 |
HGNC: | 12705 |
UniProt: | O95497 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.22e-61 | 48 |
phagocyte | 2.22e-61 | 48 |
myeloid leukocyte | 4.23e-57 | 72 |
macrophage dendritic cell progenitor | 1.30e-54 | 61 |
classical monocyte | 1.51e-54 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.51e-54 | 42 |
monopoietic cell | 5.67e-53 | 59 |
monocyte | 5.67e-53 | 59 |
monoblast | 5.67e-53 | 59 |
promonocyte | 5.67e-53 | 59 |
granulocyte monocyte progenitor cell | 4.81e-48 | 67 |
myeloid lineage restricted progenitor cell | 1.97e-45 | 66 |
myeloid cell | 2.34e-43 | 108 |
common myeloid progenitor | 2.34e-43 | 108 |
leukocyte | 1.35e-37 | 136 |
hematopoietic stem cell | 6.27e-34 | 168 |
nongranular leukocyte | 1.20e-33 | 115 |
hematopoietic oligopotent progenitor cell | 4.58e-32 | 161 |
hematopoietic multipotent progenitor cell | 4.58e-32 | 161 |
hematopoietic cell | 6.91e-31 | 177 |
hematopoietic lineage restricted progenitor cell | 9.15e-29 | 120 |
intermediate monocyte | 5.26e-12 | 9 |
CD14-positive, CD16-positive monocyte | 5.26e-12 | 9 |
granulocyte | 6.43e-11 | 8 |
macrophage | 5.05e-08 | 6 |
mesenchymal cell | 1.33e-07 | 354 |
blood cell | 2.06e-07 | 11 |
connective tissue cell | 4.68e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.37e-51 | 98 |
blood island | 2.37e-51 | 98 |
hemolymphoid system | 4.78e-46 | 108 |
bone marrow | 1.41e-43 | 76 |
bone element | 5.46e-39 | 82 |
immune system | 3.82e-38 | 93 |
skeletal element | 7.65e-34 | 90 |
skeletal system | 1.34e-28 | 100 |
lateral plate mesoderm | 5.16e-18 | 203 |
musculoskeletal system | 1.92e-13 | 167 |
mesoderm | 8.03e-10 | 315 |
mesoderm-derived structure | 8.03e-10 | 315 |
presumptive mesoderm | 8.03e-10 | 315 |
adult organism | 7.17e-09 | 114 |
blood | 2.50e-08 | 15 |
haemolymphatic fluid | 2.50e-08 | 15 |
organism substance | 2.50e-08 | 15 |