FFCP PHASE1:Hg19::chr11:120008883..120008884,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23650 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17274 | |||
|TSSclassifier=strong | |||
|UniProt=Q14134 | |||
|association_with_transcript=-20bp_to_NM_012101,uc001pwz.2,uc001pxa.2_5end | |||
|cluster_id=chr11:120008883..120008884,- | |||
|description=CAGE_peak_16_at_TRIM29_5end | |||
|id=chr11:120008883..120008884,- | |||
|ontology_enrichment_celltype=CL:0002076!2.78e-35!43;CL:0000066!8.28e-31!254;CL:0000223!1.59e-25!59;CL:0002251!2.16e-21!21;CL:0002159!1.56e-16!13;CL:0002368!9.01e-14!13;CL:0000622!1.69e-12!5;CL:0000362!2.04e-10!8;CL:0000154!2.49e-10!6;CL:0000244!2.55e-10!4;CL:0000731!2.55e-10!4;CL:0002202!3.45e-10!9;CL:0002632!3.45e-10!9;CL:0000240!4.87e-10!6;CL:0000311!4.87e-10!6;CL:0000079!4.87e-10!6;CL:0000237!4.87e-10!6;CL:0000036!4.87e-10!6;CL:0000357!4.87e-10!6;CL:0000114!4.87e-10!6;CL:0000068!8.89e-09!3;CL:0000069!8.89e-09!3;CL:0000307!8.89e-09!3;CL:0000377!8.89e-09!3;CL:0002328!1.08e-08!3;CL:0000076!1.77e-08!62;CL:0002623!3.91e-08!3;CL:0002150!6.12e-08!3;CL:0000861!6.12e-08!3;CL:0000312!7.64e-08!5;CL:0002621!1.97e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002202;7.34e-40;9!CL:0002632;7.34e-40;9!CL:0000307;4.19e-31;3!CL:0002328;1.35e-30;3!CL:0002368;1.61e-27;13!CL:0000622;2.11e-18;5!CL:0000240;1.23e-15;6!CL:0000311;1.23e-15;6!CL:0000079;1.23e-15;6!CL:0000237;1.23e-15;6!CL:0000154;1.93e-15;6!CL:0002623;3.61e-14;3!CL:0002076;6.81e-14;42!CL:0002336;2.96e-11;1!CL:0002261;2.96e-11;1!CL:0002170;2.96e-11;1!CL:0000244;7.34e-11;4!CL:0000731;7.34e-11;4!CL:0000362;1.29e-10;9!CL:0000150;1.74e-10;9!CL:0000312;5.06e-09;5!CL:0002159;5.34e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,6.24e-40,9;CL:0002632,6.24e-40,9;CL:0000068,4.44e-31,3;CL:0000069,4.44e-31,3;CL:0000307,4.44e-31,3;CL:0000377,4.44e-31,3;CL:0002328,1.00e-30,3;CL:0002368,1.44e-27,13;CL:0002076,2.40e-22,42;CL:0000622,1.99e-18,5;CL:0000223,8.38e-16,58;CL:0000240,1.30e-15,6;CL:0000311,1.30e-15,6;CL:0000079,1.30e-15,6;CL:0000237,1.30e-15,6;CL:0000036,1.30e-15,6;CL:0000357,1.30e-15,6;CL:0000114,1.30e-15,6;CL:0000154,1.84e-15,6;CL:0002623,5.05e-14,3;CL:0000066,3.85e-13,253;CL:0002336,2.18e-11,1;CL:0002261,2.18e-11,1;CL:0002170,2.18e-11,1;CL:0000244,6.65e-11,4;CL:0000731,6.65e-11,4;CL:0000362,1.21e-10,9;CL:0000150,1.69e-10,9;CL:0000312,5.95e-09,5;CL:0002159,5.13e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000377;4.19e-31;3!CL:0000357;1.23e-15;6!CL:0000114;1.23e-15;6!CL:0000223;2.98e-08;58 | |||
|ontology_enrichment_disease=DOID:305!2.41e-13!106;DOID:1749!3.39e-11!14;DOID:0050687!3.11e-09!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!5.54e-28!72;UBERON:0004119!3.90e-23!169;UBERON:0000925!3.90e-23!169;UBERON:0006595!3.90e-23!169;UBERON:0000065!9.82e-21!53;UBERON:0008947!3.83e-18!38;UBERON:0003258!3.83e-18!38;UBERON:0000072!2.27e-17!46;UBERON:0001737!1.51e-16!9;UBERON:0001007!6.89e-15!155;UBERON:0001555!6.89e-15!155;UBERON:0007026!6.89e-15!155;UBERON:0001041!1.61e-14!98;UBERON:0000077!2.34e-14!130;UBERON:0001557!1.06e-12!19;UBERON:0004921!1.95e-12!129;UBERON:0004185!1.95e-12!129;UBERON:0000365!4.72e-12!5;UBERON:0003729!2.27e-11!5;UBERON:0000166!8.37e-11!21;UBERON:0007196!2.69e-10!14;UBERON:0001558!2.69e-10!14;UBERON:0005910!5.77e-10!6;UBERON:0000161!2.61e-09!35;UBERON:0000165!3.62e-09!28;UBERON:0000930!3.62e-09!28;UBERON:0003343!4.60e-09!4;UBERON:0004785!4.60e-09!4;UBERON:0005178!7.73e-09!34;UBERON:0002224!7.73e-09!34;UBERON:0004815!1.08e-08!3;UBERON:0002031!1.08e-08!3;UBERON:0003126!1.20e-08!7;UBERON:0001005!1.20e-08!7;UBERON:0005181!1.69e-08!35;UBERON:0000063!1.80e-08!97;UBERON:0000344!3.44e-08!12;UBERON:0001949!1.97e-07!3;UBERON:0003102!7.74e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.35e-30;3!UBERON:0002031;1.35e-30;3!UBERON:0007196;8.21e-24;15!UBERON:0001558;8.21e-24;15!UBERON:0000072;5.20e-19;37!UBERON:0002185;1.23e-18;5!UBERON:0000065;1.08e-14;44!UBERON:0003126;1.06e-13;7!UBERON:0001005;1.06e-13;7!UBERON:0000485;1.73e-13;7!UBERON:0001737;1.74e-10;9!UBERON:0001557;1.74e-10;9!UBERON:0005178;1.96e-10;34!UBERON:0002224;1.96e-10;34!UBERON:0005181;2.46e-09;35!UBERON:0000365;7.25e-09;5!UBERON:0001044;1.57e-07;6!UBERON:0005910;1.57e-07;6!UBERON:0003293;1.57e-07;6!UBERON:0003294;1.57e-07;6!UBERON:0010047;1.57e-07;6!UBERON:0003408;1.57e-07;6!UBERON:0000167;1.57e-07;6!UBERON:0001004;3.94e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.00e-30,3;UBERON:0002031,1.00e-30,3;UBERON:0007196,7.46e-24,15;UBERON:0001558,7.46e-24,15;UBERON:0008947,3.90e-20,38;UBERON:0003258,3.90e-20,38;UBERON:0002185,1.03e-18,5;UBERON:0000072,4.64e-16,47;UBERON:0001004,1.17e-14,74;UBERON:0000065,7.95e-14,54;UBERON:0003126,1.08e-13,7;UBERON:0001005,1.08e-13,7;UBERON:0001041,3.17e-12,87;UBERON:0004119,1.34e-11,160;UBERON:0000925,1.34e-11,160;UBERON:0006595,1.34e-11,160;UBERON:0000485,1.17e-10,9;UBERON:0001737,1.92e-10,9;UBERON:0005178,2.60e-10,34;UBERON:0002224,2.60e-10,34;UBERON:0004921,3.29e-10,118;UBERON:0005181,5.26e-10,35;UBERON:0001007,1.65e-09,145;UBERON:0001555,1.65e-09,145;UBERON:0007026,1.65e-09,145;UBERON:0000365,6.70e-09,5;UBERON:0005910,1.47e-07,6;UBERON:0001044,1.86e-07,6;UBERON:0003293,1.86e-07,6;UBERON:0003294,1.86e-07,6;UBERON:0010047,1.86e-07,6;UBERON:0000167,1.86e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,2.10844143144775,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.728590576585084,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.545492241181669,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0.828147600278907,0.505754070234305,0.482022059766964,1.21323370005633,0.871517776369625,1.66089433377768,1.07865046528132,0.98110732562673,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,2.24803506515239,1.10581869652794,1.38882667737794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671928512795438,0.425325291727159,0.53735113621709,0.290633938513962,3.06706143332169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20303882181971,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72279661398852,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.127612712494584,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34710957815717,2.01090682660736,3.26672954583968,0,0.86101074534246,1.68471475667626,0.443430153536676,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.780103689942349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,1.365521379426,0,0.945550727071745,0,0,0,0,0,0,0,0,0,0,0.83654246567162,0,0,0.46112780877612,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.978323094660449,0,0,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0,0.195984794828755,0.609414446062818,0,0,0.677294319023596,0.803982487948041,0.821154570532092,0.193978032976839,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,0.589848616738702,0.183428598521679,0.346576998451015,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0.766574565837572,0,0,0.606965604236632,0,0.354809480650555,0,0,0.271878931907327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03608082081518,0.51215543128185,1.38251932362818,0,0,0,0,0.22910686854405,0,0,0,0.687051635306701,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.202056159043763,0.0717222053926763,0.665320713092027,0.244209805832924,0,0,0,0,0,0,0,0,0 | |||
|short_description=p16@TRIM29 | |||
}} |
Latest revision as of 04:57, 16 September 2015
Short description: | p16@TRIM29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_TRIM29_5end |
Coexpression cluster: | NA |
Association with transcript: | -20bp_to_NM_012101, uc001pwz.2, uc001pxa.2_5end |
EntrezGene: | TRIM29 |
HGNC: | 17274 |
UniProt: | Q14134 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.00e-30 | 3 |
epithelium of bronchus | 1.00e-30 | 3 |
tracheobronchial tree | 7.46e-24 | 15 |
lower respiratory tract | 7.46e-24 | 15 |
respiratory primordium | 3.90e-20 | 38 |
endoderm of foregut | 3.90e-20 | 38 |
bronchus | 1.03e-18 | 5 |
segment of respiratory tract | 4.64e-16 | 47 |
respiratory system | 1.17e-14 | 74 |
respiratory tract | 7.95e-14 | 54 |
trachea | 1.08e-13 | 7 |
respiratory airway | 1.08e-13 | 7 |
foregut | 3.17e-12 | 87 |
endoderm-derived structure | 1.34e-11 | 160 |
endoderm | 1.34e-11 | 160 |
presumptive endoderm | 1.34e-11 | 160 |
simple columnar epithelium | 1.17e-10 | 9 |
larynx | 1.92e-10 | 9 |
thoracic cavity element | 2.60e-10 | 34 |
thoracic cavity | 2.60e-10 | 34 |
subdivision of digestive tract | 3.29e-10 | 118 |
thoracic segment organ | 5.26e-10 | 35 |
digestive system | 1.65e-09 | 145 |
digestive tract | 1.65e-09 | 145 |
primitive gut | 1.65e-09 | 145 |
urothelium | 6.70e-09 | 5 |
transitional epithelium | 1.47e-07 | 6 |
saliva-secreting gland | 1.86e-07 | 6 |
gland of oral region | 1.86e-07 | 6 |
gland of foregut | 1.86e-07 | 6 |
oral gland | 1.86e-07 | 6 |
oral cavity | 1.86e-07 | 6 |