FFCP PHASE1:Hg19::chr12:121734496..121734564,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10645 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1470 | |||
|TSSclassifier=strong | |||
|UniProt=Q8IZW1,Q96RR4 | |||
|association_with_transcript=0bp_to_ENST00000360452,ENST00000398924,ENST00000402834,ENST00000404169,NM_172226,uc001tzt.2,uc001tzu.2,uc001uad.1_5end | |||
|cluster_id=chr12:121734496..121734564,- | |||
|coexpression_cluster_id=C3247 | |||
|description=CAGE_peak_1_at_CAMKK2_5end | |||
|id=chr12:121734496..121734564,- | |||
|ontology_enrichment_celltype=CL:0002057!3.32e-26!42;CL:0000860!6.05e-23!45;CL:0000766!2.37e-19!76;CL:0002194!1.33e-15!63;CL:0000576!1.33e-15!63;CL:0000040!1.33e-15!63;CL:0000559!1.33e-15!63;CL:0000557!5.19e-15!71;CL:0002009!6.92e-15!65;CL:0000763!5.80e-14!112;CL:0000049!5.80e-14!112;CL:0000839!1.56e-13!70;CL:0000115!1.13e-09!35;CL:0002139!8.74e-09!24;CL:0002078!5.80e-08!44;CL:0000071!5.79e-07!18;CL:0002546!5.79e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.18e-19;33!CL:0002057;3.18e-19;33!CL:0000576;9.71e-16;48!CL:0000473;1.20e-13;39!CL:0000234;1.20e-13;39!CL:0000766;3.96e-11;69!CL:0002139;8.44e-09;24!CL:0000115;1.41e-08;36!CL:0000071;5.62e-07;18!CL:0000763;6.03e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.32e-26,42;CL:0002057,3.32e-26,42;CL:0000473,9.60e-23,48;CL:0000234,9.60e-23,48;CL:0000766,7.36e-22,72;CL:0002194,4.60e-18,59;CL:0000576,4.60e-18,59;CL:0000040,4.60e-18,59;CL:0000559,4.60e-18,59;CL:0002009,3.29e-17,61;CL:0000557,3.33e-17,67;CL:0000839,1.38e-15,66;CL:0000763,1.75e-15,108;CL:0000049,1.75e-15,108;CL:0000115,4.52e-10,36;CL:0002139,8.74e-09,24;CL:0002078,2.53e-08,45;CL:0000071,5.79e-07,18;CL:0002546,5.79e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;4.07e-19;42!CL:0002546;5.62e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!8.21e-19!112;UBERON:0002390!1.86e-16!102;UBERON:0003061!1.86e-16!102;UBERON:0002405!4.33e-15!115;UBERON:0002371!3.42e-14!80;UBERON:0001474!1.11e-11!86;UBERON:0001950!1.73e-11!20;UBERON:0004765!4.63e-11!101;UBERON:0001434!4.63e-11!101;UBERON:0002619!7.90e-11!22;UBERON:0001869!1.02e-10!32;UBERON:0003081!1.25e-10!216;UBERON:0001893!4.12e-10!34;UBERON:0002791!1.40e-09!33;UBERON:0000956!1.33e-08!25;UBERON:0000203!1.33e-08!25;UBERON:0002020!3.97e-08!34;UBERON:0003528!3.97e-08!34;UBERON:0007023!5.90e-08!115;UBERON:0000468!3.08e-07!659;UBERON:0003080!3.51e-07!42;UBERON:0002780!3.88e-07!41;UBERON:0001890!3.88e-07!41;UBERON:0006240!3.88e-07!41;UBERON:0001049!5.15e-07!57;UBERON:0005068!5.15e-07!57;UBERON:0006241!5.15e-07!57;UBERON:0007135!5.15e-07!57;UBERON:0001986!5.79e-07!18;UBERON:0004638!5.79e-07!18;UBERON:0004852!5.79e-07!18;UBERON:0000480!6.29e-07!626;UBERON:0000467!7.85e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.64e-11;20!UBERON:0002619;7.76e-11;22!UBERON:0001869;8.83e-10;32!UBERON:0001893;2.47e-09;34!UBERON:0002791;1.03e-08;32!UBERON:0000956;1.18e-08;25!UBERON:0000203;1.18e-08;25!UBERON:0003528;1.05e-07;34!UBERON:0002020;1.05e-07;34!UBERON:0004638;5.62e-07;18!UBERON:0001986;5.62e-07;18!UBERON:0004852;5.62e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.11e-20,108;UBERON:0002390,2.85e-18,98;UBERON:0003061,2.85e-18,98;UBERON:0002405,1.61e-17,93;UBERON:0002371,3.99e-16,76;UBERON:0001474,2.77e-13,82;UBERON:0001434,7.48e-12,100;UBERON:0003081,1.51e-11,203;UBERON:0001950,1.73e-11,20;UBERON:0004765,5.82e-11,90;UBERON:0002619,7.90e-11,22;UBERON:0001869,1.02e-10,32;UBERON:0001893,4.12e-10,34;UBERON:0002791,2.43e-09,32;UBERON:0000956,1.33e-08,25;UBERON:0000203,1.33e-08,25;UBERON:0003528,3.97e-08,34;UBERON:0002020,3.97e-08,34;UBERON:0000073,6.21e-08,53;UBERON:0002616,6.21e-08,53;UBERON:0007023,1.16e-07,114;UBERON:0002780,3.88e-07,41;UBERON:0001890,3.88e-07,41;UBERON:0003080,3.88e-07,41;UBERON:0006240,3.88e-07,41;UBERON:0004638,5.79e-07,18;UBERON:0001986,5.79e-07,18;UBERON:0004852,5.79e-07,18;UBERON:0001049,5.86e-07,56;UBERON:0005068,5.86e-07,56;UBERON:0006241,5.86e-07,56;UBERON:0007135,5.86e-07,56;UBERON:0000922,9.46e-07,592 | |||
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| |||
|short_description=p1@CAMKK2 | |||
}} |
Latest revision as of 21:51, 16 September 2015
Short description: | p1@CAMKK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CAMKK2_5end |
Coexpression cluster: | C3247_Eosinophils_CD14_cerebellum_Neutrophils_brain_occipital_temporal |
Association with transcript: | 0bp_to_ENST00000360452, ENST00000398924, ENST00000402834, ENST00000404169, NM_172226, uc001tzt.2, uc001tzu.2, uc001uad.1_5end |
EntrezGene: | CAMKK2 |
HGNC: | 1470 |
UniProt: | Q8IZW1Q96RR4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.32e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.32e-26 | 42 |
defensive cell | 9.60e-23 | 48 |
phagocyte | 9.60e-23 | 48 |
myeloid leukocyte | 7.36e-22 | 72 |
monopoietic cell | 4.60e-18 | 59 |
monocyte | 4.60e-18 | 59 |
monoblast | 4.60e-18 | 59 |
promonocyte | 4.60e-18 | 59 |
macrophage dendritic cell progenitor | 3.29e-17 | 61 |
granulocyte monocyte progenitor cell | 3.33e-17 | 67 |
myeloid lineage restricted progenitor cell | 1.38e-15 | 66 |
myeloid cell | 1.75e-15 | 108 |
common myeloid progenitor | 1.75e-15 | 108 |
endothelial cell | 4.52e-10 | 36 |
endothelial cell of vascular tree | 8.74e-09 | 24 |
meso-epithelial cell | 2.53e-08 | 45 |
blood vessel endothelial cell | 5.79e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.79e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.11e-20 | 108 |
hematopoietic system | 2.85e-18 | 98 |
blood island | 2.85e-18 | 98 |
immune system | 1.61e-17 | 93 |
bone marrow | 3.99e-16 | 76 |
bone element | 2.77e-13 | 82 |
skeletal system | 7.48e-12 | 100 |
lateral plate mesoderm | 1.51e-11 | 203 |
neocortex | 1.73e-11 | 20 |
skeletal element | 5.82e-11 | 90 |
regional part of cerebral cortex | 7.90e-11 | 22 |
cerebral hemisphere | 1.02e-10 | 32 |
telencephalon | 4.12e-10 | 34 |
regional part of telencephalon | 2.43e-09 | 32 |
cerebral cortex | 1.33e-08 | 25 |
pallium | 1.33e-08 | 25 |
brain grey matter | 3.97e-08 | 34 |
gray matter | 3.97e-08 | 34 |
regional part of nervous system | 6.21e-08 | 53 |
regional part of brain | 6.21e-08 | 53 |
adult organism | 1.16e-07 | 114 |
regional part of forebrain | 3.88e-07 | 41 |
forebrain | 3.88e-07 | 41 |
anterior neural tube | 3.88e-07 | 41 |
future forebrain | 3.88e-07 | 41 |
blood vessel endothelium | 5.79e-07 | 18 |
endothelium | 5.79e-07 | 18 |
cardiovascular system endothelium | 5.79e-07 | 18 |
neural tube | 5.86e-07 | 56 |
neural rod | 5.86e-07 | 56 |
future spinal cord | 5.86e-07 | 56 |
neural keel | 5.86e-07 | 56 |
embryo | 9.46e-07 | 592 |