FFCP PHASE1:Hg19::chr14:22927984..22927999,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-89bp_to_uc001wea.3,uc010ajt.2,uc010aju.1_5end | |||
|cluster_id=chr14:22927984..22927999,+ | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_4_at_uc001wea.3_5end,CAGE_peak_4_at_uc010ajt.2_5end,CAGE_peak_4_at_uc010aju.1_5end | |||
|id=chr14:22927984..22927999,+ | |||
|ontology_enrichment_celltype=CL:0000623!4.50e-09!3;CL:0000825!4.50e-09!3;CL:0002127!7.50e-08!1;CL:0000914!7.50e-08!1;CL:0000911!7.50e-08!1;CL:0000814!7.50e-08!1;CL:0002042!7.50e-08!1;CL:0002039!7.50e-08!1;CL:0002040!7.50e-08!1;CL:0002041!7.50e-08!1;CL:0001024!9.71e-08!1;CL:0002563!4.63e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002127;3.99e-50;1!CL:0000911;3.99e-50;1!CL:0000814;3.99e-50;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,3.99e-50,1;CL:0000914,3.99e-50,1;CL:0000911,3.99e-50,1;CL:0000814,3.99e-50,1;CL:0002042,3.99e-50,1;CL:0002039,3.99e-50,1;CL:0002040,3.99e-50,1;CL:0002041,3.99e-50,1;CL:0000893,7.14e-26,2;CL:0002489,7.14e-26,2;CL:0000809,7.14e-26,2;CL:0000808,7.14e-26,2;CL:0000894,7.14e-26,2;CL:0000806,7.14e-26,2;CL:0000807,7.14e-26,2;CL:0000805,7.14e-26,2;CL:0002425,7.14e-26,2 | |||
|ontology_enrichment_development_v019=CL:0002425;7.14e-26;2!UBERON:0006965;9.18e-26;2!UBERON:0004872;2.35e-08;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!3.54e-22!7;UBERON:0002370!2.69e-15!4;UBERON:0005058!2.69e-15!4;UBERON:0009113!2.69e-15!4;UBERON:0003295!2.69e-15!4;UBERON:0005562!2.69e-15!4;UBERON:0000974!1.83e-10!10;UBERON:0003351!2.34e-10!6;UBERON:0005409!1.15e-09!35;UBERON:0002106!9.28e-09!3;UBERON:0004854!9.28e-09!3;UBERON:0009034!9.28e-09!3;UBERON:0002095!9.28e-09!3;UBERON:0004782!9.28e-09!3;UBERON:0003281!9.28e-09!3;UBERON:0009664!9.28e-09!3;UBERON:0002296!9.28e-09!3;UBERON:0005602!9.28e-09!3;UBERON:0001179!9.28e-09!3;UBERON:0006293!9.28e-09!3;UBERON:0000160!2.06e-07!27;UBERON:0001242!4.63e-07!4;UBERON:0001262!4.63e-07!4;UBERON:0004786!4.63e-07!4;UBERON:0004808!4.63e-07!4;UBERON:0001277!4.63e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.68e-99;2!UBERON:0005058;5.68e-99;2!UBERON:0009113;5.68e-99;2!UBERON:0004177;1.81e-40;5!UBERON:0005057;1.81e-40;5!UBERON:0000077;1.98e-08;27!UBERON:0002405;1.98e-08;27!UBERON:0001638;8.85e-07;9!UBERON:0003920;8.85e-07;9!UBERON:0004582;8.85e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,8.91e-111,4;UBERON:0005058,8.91e-111,4;UBERON:0009113,8.91e-111,4;UBERON:0003295,8.91e-111,4;UBERON:0005562,8.91e-111,4;UBERON:0003351,2.58e-74,6;UBERON:0004177,6.87e-64,7;UBERON:0005057,6.87e-64,7;UBERON:0000974,4.18e-45,10;UBERON:0003408,4.18e-45,10;UBERON:0001042,4.18e-45,10;UBERON:0009145,4.18e-45,10;UBERON:0006562,4.07e-41,11;UBERON:0009722,4.07e-41,11;UBERON:0007690,4.07e-41,11;UBERON:0008814,1.41e-25,18;UBERON:0001557,2.73e-24,19;UBERON:0004807,8.05e-17,28;UBERON:0000077,2.82e-16,29;UBERON:0002368,1.18e-13,35;UBERON:0000949,7.94e-11,45;UBERON:0000072,2.10e-10,47;UBERON:0003929,3.61e-09,54;UBERON:0000065,3.61e-09,54;UBERON:0002530,1.83e-08,59;UBERON:0000153,4.28e-08,62;UBERON:0007811,4.28e-08,62;UBERON:0001004,6.51e-07,74;UBERON:0001638,8.85e-07,9;UBERON:0003920,8.85e-07,9;UBERON:0004582,8.85e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236132343941038,0,0,0,0,0,0,0,0,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0.128091319725675,0,0.164437904603676,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57795831185113,0.394061520403854,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865554558968364,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.0771741581079447,0.437119121007915,0,0,0,0,0,0,0,0.0939839179798536,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,11.7551815901531,6.89029328684023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00636896795513,0 | |||
|short_description=p4@uc001wea.3,p4@uc010ajt.2,p4@uc010aju.1 | |||
}} |
Latest revision as of 19:12, 24 July 2015
Short description: | p4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_uc001wea.3_5end, CAGE_peak_4_at_uc010ajt.2_5end, CAGE_peak_4_at_uc010aju.1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | -89bp_to_uc001wea.3, uc010ajt.2, uc010aju.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 3.99e-50 | 1 |
immature NK T cell | 3.99e-50 | 1 |
effector T cell | 3.99e-50 | 1 |
mature NK T cell | 3.99e-50 | 1 |
immature NK T cell stage IV | 3.99e-50 | 1 |
immature NK T cell stage I | 3.99e-50 | 1 |
immature NK T cell stage II | 3.99e-50 | 1 |
immature NK T cell stage III | 3.99e-50 | 1 |
thymocyte | 7.14e-26 | 2 |
double negative thymocyte | 7.14e-26 | 2 |
double-positive, alpha-beta thymocyte | 7.14e-26 | 2 |
DN4 thymocyte | 7.14e-26 | 2 |
DN1 thymic pro-T cell | 7.14e-26 | 2 |
DN2 thymocyte | 7.14e-26 | 2 |
DN3 thymocyte | 7.14e-26 | 2 |
immature single positive thymocyte | 7.14e-26 | 2 |
early T lineage precursor | 7.14e-26 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 8.91e-111 | 4 |
hemolymphoid system gland | 8.91e-111 | 4 |
thymic region | 8.91e-111 | 4 |
pharyngeal gland | 8.91e-111 | 4 |
thymus primordium | 8.91e-111 | 4 |
pharyngeal epithelium | 2.58e-74 | 6 |
hemopoietic organ | 6.87e-64 | 7 |
immune organ | 6.87e-64 | 7 |
neck | 4.18e-45 | 10 |
gland of gut | 4.18e-45 | 10 |
chordate pharynx | 4.18e-45 | 10 |
pharyngeal region of foregut | 4.18e-45 | 10 |
pharynx | 4.07e-41 | 11 |
entire pharyngeal arch endoderm | 4.07e-41 | 11 |
early pharyngeal endoderm | 4.07e-41 | 11 |
pharyngeal arch system | 1.41e-25 | 18 |
upper respiratory tract | 2.73e-24 | 19 |
respiratory system epithelium | 8.05e-17 | 28 |
mixed endoderm/mesoderm-derived structure | 2.82e-16 | 29 |
endocrine gland | 1.18e-13 | 35 |
endocrine system | 7.94e-11 | 45 |
segment of respiratory tract | 2.10e-10 | 47 |
gut epithelium | 3.61e-09 | 54 |
respiratory tract | 3.61e-09 | 54 |
gland | 1.83e-08 | 59 |
anterior region of body | 4.28e-08 | 62 |
craniocervical region | 4.28e-08 | 62 |
respiratory system | 6.51e-07 | 74 |
vein | 8.85e-07 | 9 |
venous blood vessel | 8.85e-07 | 9 |
venous system | 8.85e-07 | 9 |